RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 MXRA8Q9BRK3 442 aa28.05■■■□□ 2.08
SHOX2-201ENST00000389589 SEMA6BQ9H3T3 888 aa28.05■■■□□ 2.08
SHOX2-201ENST00000389589 LOXHD1Q8IVV2 1947 aa28.04■■■□□ 2.08
SHOX2-201ENST00000389589 VWA5AO00534 786 aa28.04■■■□□ 2.08
SHOX2-201ENST00000389589 ARHGAP6O43182 974 aa28.04■■■□□ 2.08
SHOX2-201ENST00000389589 STX10O60499 249 aa28.04■■■□□ 2.08
SHOX2-201ENST00000389589 FGFR1OPO95684 399 aaKnown RBP28.04■■■□□ 2.08
SHOX2-201ENST00000389589 TPM2P07951 284 aa28.04■■■□□ 2.08
SHOX2-201ENST00000389589 TPM1P09493 284 aa28.04■■■□□ 2.08
SHOX2-201ENST00000389589 LRRC63Q05C16 580 aa28.04■■■□□ 2.08
SHOX2-201ENST00000389589 TRIM14Q14142 442 aa28.04■■■□□ 2.08
SHOX2-201ENST00000389589 C16orf45Q96MC5 204 aaPredicted RBP28.04■■■□□ 2.08
SHOX2-201ENST00000389589 BAG1Q99933 345 aaPredicted RBP28.04■■■□□ 2.08
SHOX2-201ENST00000389589 ADARB2Q9NS39 739 aaKnown RBP28.04■■■□□ 2.08
SHOX2-201ENST00000389589 GAS7O60861 476 aa28.04■■■□□ 2.08
SHOX2-201ENST00000389589 BCRP11274 1271 aa28.04■■■□□ 2.08
SHOX2-201ENST00000389589 MUTP22033 750 aa28.04■■■□□ 2.08
SHOX2-201ENST00000389589 FAM26FQ5R3K3 315 aa28.04■■■□□ 2.08
SHOX2-201ENST00000389589 E4F1Q66K89 784 aaPredicted RBP28.04■■■□□ 2.08
SHOX2-201ENST00000389589 TMEM139Q8IV31 216 aa28.04■■■□□ 2.08
SHOX2-201ENST00000389589 ZNF577Q9BSK1 485 aa28.04■■■□□ 2.08
SHOX2-201ENST00000389589 LGALS16A8MUM7 142 aa28.03■■■□□ 2.08
SHOX2-201ENST00000389589 KRT18P05783 430 aaKnown RBP28.03■■■□□ 2.08
SHOX2-201ENST00000389589 ADKP55263 362 aaKnown RBP28.03■■■□□ 2.08
SHOX2-201ENST00000389589 GOLGA8FQ08AF8 430 aa28.03■■■□□ 2.08
SHOX2-201ENST00000389589 GOLGA8DPQ0D2H9 430 aa28.03■■■□□ 2.08
SHOX2-201ENST00000389589 MYOCDQ8IZQ8 938 aa28.03■■■□□ 2.08
SHOX2-201ENST00000389589 FRMD3A2A2Y4 597 aa28.03■■■□□ 2.08
SHOX2-201ENST00000389589 USP27XA6NNY8 438 aa28.03■■■□□ 2.08
SHOX2-201ENST00000389589 EML1O00423 815 aa28.03■■■□□ 2.08
SHOX2-201ENST00000389589 DDNO94850 711 aaPredicted RBP28.03■■■□□ 2.08
SHOX2-201ENST00000389589 HSD17B14Q9BPX1 270 aa28.03■■■□□ 2.08
SHOX2-201ENST00000389589 COL20A1Q9P218 1284 aa28.03■■■□□ 2.08
SHOX2-201ENST00000389589 FRMPD4Q14CM0 1322 aa28.02■■■□□ 2.08
SHOX2-201ENST00000389589 KIF20AO95235 890 aa28.02■■■□□ 2.08
SHOX2-201ENST00000389589 TNNT1P13805 278 aa28.02■■■□□ 2.08
SHOX2-201ENST00000389589 OAZ1P54368 228 aa28.02■■■□□ 2.08
SHOX2-201ENST00000389589 HMGCS2P54868 508 aa28.02■■■□□ 2.08
SHOX2-201ENST00000389589 UBXN1Q04323 297 aa28.02■■■□□ 2.08
SHOX2-201ENST00000389589 RBL2Q08999 1139 aa28.02■■■□□ 2.08
SHOX2-201ENST00000389589 MUM1L1Q5H9M0 696 aa28.02■■■□□ 2.08
SHOX2-201ENST00000389589 SYTL5Q8TDW5 730 aaPredicted RBP28.02■■■□□ 2.08
SHOX2-201ENST00000389589 CCDC51Q96ER9 411 aa28.02■■■□□ 2.08
SHOX2-201ENST00000389589 RIT2Q99578 217 aa28.02■■■□□ 2.08
SHOX2-201ENST00000389589 TSG101Q99816 390 aa28.02■■■□□ 2.08
SHOX2-201ENST00000389589 RNF181Q9P0P0 153 aa28.02■■■□□ 2.08
SHOX2-201ENST00000389589 A0A1W2PQC6 194 aa28.01■■■□□ 2.07
SHOX2-201ENST00000389589 EYA4O95677 639 aa28.01■■■□□ 2.07
SHOX2-201ENST00000389589 ARSHQ5FYA8 562 aa28.01■■■□□ 2.07
SHOX2-201ENST00000389589 PCNX4Q63HM2 1172 aa28.01■■■□□ 2.07
SHOX2-201ENST00000389589 CNGA4Q8IV77 575 aa28.01■■■□□ 2.07
SHOX2-201ENST00000389589 DDX55Q8NHQ9 600 aaKnown RBP eCLIP28.01■■■□□ 2.07
SHOX2-201ENST00000389589 ATG4CQ96DT6 458 aa28.01■■■□□ 2.07
SHOX2-201ENST00000389589 CNOT6LQ96LI5 555 aaKnown RBP28.01■■■□□ 2.07
SHOX2-201ENST00000389589 TEKT3Q9BXF9 490 aa28.01■■■□□ 2.07
SHOX2-201ENST00000389589 TMOD4Q9NZQ9 345 aa28.01■■■□□ 2.07
SHOX2-201ENST00000389589 PSMC6P62333 389 aa28.01■■■□□ 2.07
SHOX2-201ENST00000389589 PABPC4Q13310 644 aaKnown RBP eCLIP28.01■■■□□ 2.07
SHOX2-201ENST00000389589 PTPN14Q15678 1187 aa28.01■■■□□ 2.07
SHOX2-201ENST00000389589 NYAP1Q6ZVC0 841 aa28.01■■■□□ 2.07
SHOX2-201ENST00000389589 TRERF1Q96PN7 1200 aa28.01■■■□□ 2.07
SHOX2-201ENST00000389589 TUBGCP2Q9BSJ2 902 aa28.01■■■□□ 2.07
SHOX2-201ENST00000389589 NAA15Q9BXJ9 866 aaKnown RBP28.01■■■□□ 2.07
SHOX2-201ENST00000389589 HOMER2Q9NSB8 354 aa28.01■■■□□ 2.07
SHOX2-201ENST00000389589 TRMT1Q9NXH9 659 aaKnown RBP28.01■■■□□ 2.07
SHOX2-201ENST00000389589 FZD1Q9UP38 647 aa28.01■■■□□ 2.07
SHOX2-201ENST00000389589 WDR90Q96KV7 1748 aa28■■■□□ 2.07
SHOX2-201ENST00000389589 KIF2AO00139 706 aaPredicted RBP28■■■□□ 2.07
SHOX2-201ENST00000389589 ARP10275 920 aa28■■■□□ 2.07
SHOX2-201ENST00000389589 DNM2P50570 870 aa28■■■□□ 2.07
SHOX2-201ENST00000389589 CYP4A11Q02928 519 aa28■■■□□ 2.07
SHOX2-201ENST00000389589 MB21D1Q8N884 522 aa28■■■□□ 2.07
SHOX2-201ENST00000389589 IPO5O00410 1097 aaKnown RBP27.99■■■□□ 2.07
SHOX2-201ENST00000389589 DSG3P32926 999 aa27.99■■■□□ 2.07
SHOX2-201ENST00000389589 HERC4Q5GLZ8 1057 aaPredicted RBP27.99■■■□□ 2.07
SHOX2-201ENST00000389589 ADAMTS5Q9UNA0 930 aa27.99■■■□□ 2.07
SHOX2-201ENST00000389589 PCDHA2Q9Y5H9 948 aa27.99■■■□□ 2.07
SHOX2-201ENST00000389589 MFAP3LO75121 409 aa27.99■■■□□ 2.07
SHOX2-201ENST00000389589 COG2Q14746 738 aa27.99■■■□□ 2.07
SHOX2-201ENST00000389589 ZNF507Q8TCN5 953 aa27.99■■■□□ 2.07
SHOX2-201ENST00000389589 DCPSQ96C86 337 aaKnown RBP27.99■■■□□ 2.07
SHOX2-201ENST00000389589 AFG3L2Q9Y4W6 797 aa27.99■■■□□ 2.07
SHOX2-201ENST00000389589 USP2O75604 605 aaPredicted RBP27.98■■■□□ 2.07
SHOX2-201ENST00000389589 PRKCSHP14314 528 aaPredicted RBP27.98■■■□□ 2.07
SHOX2-201ENST00000389589 ITGB5P18084 799 aa27.98■■■□□ 2.07
SHOX2-201ENST00000389589 MTIF2P46199 727 aaKnown RBP27.98■■■□□ 2.07
SHOX2-201ENST00000389589 RPS6P62753 249 aaKnown RBP27.98■■■□□ 2.07
SHOX2-201ENST00000389589 GIT2Q14161 759 aa27.98■■■□□ 2.07
SHOX2-201ENST00000389589 EPHA7Q15375 998 aa27.98■■■□□ 2.07
SHOX2-201ENST00000389589 B3GNT9Q6UX72 402 aa27.98■■■□□ 2.07
SHOX2-201ENST00000389589 RNF207Q6ZRF8 634 aa27.98■■■□□ 2.07
SHOX2-201ENST00000389589 PPP1R13BQ96KQ4 1090 aa27.98■■■□□ 2.07
SHOX2-201ENST00000389589 RGL1Q9NZL6 768 aa27.98■■■□□ 2.07
SHOX2-201ENST00000389589 UBIAD1Q9Y5Z9 338 aa27.98■■■□□ 2.07
SHOX2-201ENST00000389589 NPHP3-ACAD11A0A0J9YXS1 232 aa27.98■■■□□ 2.07
SHOX2-201ENST00000389589 SLITRK3O94933 977 aa27.98■■■□□ 2.07
SHOX2-201ENST00000389589 GYPCP04921 128 aa27.98■■■□□ 2.07
SHOX2-201ENST00000389589 REPS2Q8NFH8 660 aa27.98■■■□□ 2.07
SHOX2-201ENST00000389589 SYT17Q9BSW7 474 aa27.98■■■□□ 2.07
SHOX2-201ENST00000389589 CHMP2AO43633 222 aa27.97■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms