RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 GRK2P25098 689 aa3.54□□□□□ -1.84
VPS13A-206ENST00000376646 GRK3P35626 688 aa3.54□□□□□ -1.84
VPS13A-206ENST00000376646 TBC1D10BQ4KMP7 808 aaPredicted RBP3.54□□□□□ -1.84
VPS13A-206ENST00000376646 LBX2Q6XYB7 198 aa3.54□□□□□ -1.84
VPS13A-206ENST00000376646 LIMS2Q7Z4I7 341 aa3.54□□□□□ -1.84
VPS13A-206ENST00000376646 ZCCHC14Q8WYQ9 949 aaKnown RBP3.54□□□□□ -1.84
VPS13A-206ENST00000376646 SLC6A20Q9NP91 592 aa3.54□□□□□ -1.84
VPS13A-206ENST00000376646 PPP1R1BQ9UD71 204 aaPredicted RBP3.54□□□□□ -1.84
VPS13A-206ENST00000376646 MROH6A6NGR9 719 aa3.53□□□□□ -1.84
VPS13A-206ENST00000376646 K7ESM1 405 aa3.53□□□□□ -1.84
VPS13A-206ENST00000376646 B4GALT3O60512 393 aa3.53□□□□□ -1.84
VPS13A-206ENST00000376646 DIAPH1O60610 1272 aaKnown RBP3.53□□□□□ -1.84
VPS13A-206ENST00000376646 STK10O94804 968 aaKnown RBP3.53□□□□□ -1.84
VPS13A-206ENST00000376646 FGFR1P11362 822 aa3.53□□□□□ -1.84
VPS13A-206ENST00000376646 IL13P35225 146 aa3.53□□□□□ -1.84
VPS13A-206ENST00000376646 EFEMP1Q12805 493 aa3.53□□□□□ -1.84
VPS13A-206ENST00000376646 TUSC3Q13454 348 aa3.53□□□□□ -1.84
VPS13A-206ENST00000376646 CHRNA2Q15822 529 aa3.53□□□□□ -1.84
VPS13A-206ENST00000376646 OTOP3Q7RTS5 596 aa3.53□□□□□ -1.84
VPS13A-206ENST00000376646 PROSER1Q86XN7 944 aa3.53□□□□□ -1.84
VPS13A-206ENST00000376646 SGSM3Q96HU1 749 aa3.53□□□□□ -1.84
VPS13A-206ENST00000376646 CD244Q9BZW8 370 aa3.53□□□□□ -1.84
VPS13A-206ENST00000376646 SMOC1Q9H4F8 434 aa3.53□□□□□ -1.84
VPS13A-206ENST00000376646 IPPKQ9H8X2 491 aa3.53□□□□□ -1.84
VPS13A-206ENST00000376646 TRAV20A0A0B4J274 112 aa3.53□□□□□ -1.85
VPS13A-206ENST00000376646 ADCY3O60266 1144 aa3.53□□□□□ -1.85
VPS13A-206ENST00000376646 CYP1A1P04798 512 aaPredicted RBP3.53□□□□□ -1.85
VPS13A-206ENST00000376646 GNAT1P11488 350 aa3.53□□□□□ -1.85
VPS13A-206ENST00000376646 IFRD2Q12894 506 aaPredicted RBP3.53□□□□□ -1.85
VPS13A-206ENST00000376646 FAM209AQ5JX71 171 aa3.53□□□□□ -1.85
VPS13A-206ENST00000376646 ST13P5Q8NFI4 369 aaPredicted RBP3.53□□□□□ -1.85
VPS13A-206ENST00000376646 DCAF4Q8WV16 495 aa3.53□□□□□ -1.85
VPS13A-206ENST00000376646 RBM15Q96T37 977 aaKnown RBP eCLIP3.53□□□□□ -1.85
VPS13A-206ENST00000376646 PTPN18Q99952 460 aa3.53□□□□□ -1.85
VPS13A-206ENST00000376646 IQCA1LA6NCM1 817 aa3.52□□□□□ -1.85
VPS13A-206ENST00000376646 OVOL3O00110 214 aa3.52□□□□□ -1.85
VPS13A-206ENST00000376646 KRIT1O00522 736 aa3.52□□□□□ -1.85
VPS13A-206ENST00000376646 SOD2P04179 222 aa3.52□□□□□ -1.85
VPS13A-206ENST00000376646 ITGB3P05106 788 aa3.52□□□□□ -1.85
VPS13A-206ENST00000376646 ADRB1P08588 477 aa3.52□□□□□ -1.85
VPS13A-206ENST00000376646 GLRBP48167 497 aa3.52□□□□□ -1.85
VPS13A-206ENST00000376646 ZC3H6P61129 1189 aaKnown RBP3.52□□□□□ -1.85
VPS13A-206ENST00000376646 ERICH6BQ5W0A0 696 aa3.52□□□□□ -1.85
VPS13A-206ENST00000376646 STYK1Q6J9G0 422 aa3.52□□□□□ -1.85
VPS13A-206ENST00000376646 NPM2Q86SE8 214 aaKnown RBP3.52□□□□□ -1.85
VPS13A-206ENST00000376646 CLIC6Q96NY7 704 aa3.52□□□□□ -1.85
VPS13A-206ENST00000376646 SPATA9Q9BWV2 254 aa3.52□□□□□ -1.85
VPS13A-206ENST00000376646 TANGO6Q9C0B7 1094 aa3.52□□□□□ -1.85
VPS13A-206ENST00000376646 L2HGDHQ9H9P8 463 aa3.52□□□□□ -1.85
VPS13A-206ENST00000376646 MSRB2Q9Y3D2 182 aa3.52□□□□□ -1.85
VPS13A-206ENST00000376646 ZNF536O15090 1300 aa3.52□□□□□ -1.85
VPS13A-206ENST00000376646 TCRBV5S4A2TA0A5A2 114 aa3.51□□□□□ -1.85
VPS13A-206ENST00000376646 PDPK1O15530 556 aa3.51□□□□□ -1.85
VPS13A-206ENST00000376646 CKMP06732 381 aa3.51□□□□□ -1.85
VPS13A-206ENST00000376646 INSRRP14616 1297 aa3.51□□□□□ -1.85
VPS13A-206ENST00000376646 GTF2F1P35269 517 aaKnown RBP eCLIP3.51□□□□□ -1.85
VPS13A-206ENST00000376646 GPR85P60893 370 aa3.51□□□□□ -1.85
VPS13A-206ENST00000376646 MTERF2Q49AM1 385 aa3.51□□□□□ -1.85
VPS13A-206ENST00000376646 FAM26FQ5R3K3 315 aa3.51□□□□□ -1.85
VPS13A-206ENST00000376646 TRMT10BQ6PF06 316 aaKnown RBP3.51□□□□□ -1.85
VPS13A-206ENST00000376646 CKAP2LQ8IYA6 745 aa3.51□□□□□ -1.85
VPS13A-206ENST00000376646 SH3RF2Q8TEC5 729 aa3.51□□□□□ -1.85
VPS13A-206ENST00000376646 MBD6Q96DN6 1003 aa3.51□□□□□ -1.85
VPS13A-206ENST00000376646 LCORQ96JN0 433 aaPredicted RBP3.51□□□□□ -1.85
VPS13A-206ENST00000376646 ST6GALNAC2Q9UJ37 374 aa3.51□□□□□ -1.85
VPS13A-206ENST00000376646 PCDHA8Q9Y5H6 950 aa3.51□□□□□ -1.85
VPS13A-206ENST00000376646 KCNK3O14649 394 aa3.51□□□□□ -1.85
VPS13A-206ENST00000376646 COL6A1P12109 1028 aa3.51□□□□□ -1.85
VPS13A-206ENST00000376646 SSRP1Q08945 709 aaKnown RBP3.51□□□□□ -1.85
VPS13A-206ENST00000376646 KIZQ2M2Z5 673 aa3.51□□□□□ -1.85
VPS13A-206ENST00000376646 PAN2Q504Q3 1202 aaKnown RBP3.51□□□□□ -1.85
VPS13A-206ENST00000376646 RSPO2Q6UXX9 243 aaPredicted RBP3.51□□□□□ -1.85
VPS13A-206ENST00000376646 IFNL3Q8IZI9 196 aa3.51□□□□□ -1.85
VPS13A-206ENST00000376646 LRRC47Q8N1G4 583 aaKnown RBP3.51□□□□□ -1.85
VPS13A-206ENST00000376646 NUDT10Q8NFP7 164 aa3.51□□□□□ -1.85
VPS13A-206ENST00000376646 UHMK1Q8TAS1 419 aaKnown RBP3.51□□□□□ -1.85
VPS13A-206ENST00000376646 PHOSPHO1Q8TCT1 267 aa3.51□□□□□ -1.85
VPS13A-206ENST00000376646 NUDT11Q96G61 164 aa3.51□□□□□ -1.85
VPS13A-206ENST00000376646 LOXL4Q96JB6 756 aa3.51□□□□□ -1.85
VPS13A-206ENST00000376646 EXOC2Q96KP1 924 aa3.51□□□□□ -1.85
VPS13A-206ENST00000376646 YTHDC1Q96MU7 727 aaKnown RBP3.51□□□□□ -1.85
VPS13A-206ENST00000376646 C8orf49Q96NF6 230 aa3.51□□□□□ -1.85
VPS13A-206ENST00000376646 PCDH18Q9HCL0 1135 aa3.51□□□□□ -1.85
VPS13A-206ENST00000376646 NGRNQ9NPE2 291 aaKnown RBP3.51□□□□□ -1.85
VPS13A-206ENST00000376646 DSEQ9UL01 958 aa3.51□□□□□ -1.85
VPS13A-206ENST00000376646 ZDHHC9Q9Y397 364 aa3.51□□□□□ -1.85
VPS13A-206ENST00000376646 FAM221BA6H8Z2 402 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 ACOT7O00154 380 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 U2SURPO15042 1029 aaKnown RBP3.5□□□□□ -1.85
VPS13A-206ENST00000376646 PLATP00750 562 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 C6orf222P0C671 652 aaPredicted RBP3.5□□□□□ -1.85
VPS13A-206ENST00000376646 FAM153BP0C7A2 387 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 KIAA2012Q0VF49 1180 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 PUM1Q14671 1186 aaKnown RBP eCLIP3.5□□□□□ -1.85
VPS13A-206ENST00000376646 SKIDA1Q1XH10 827 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 SPATS1Q496A3 300 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 VASNQ6EMK4 673 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 PNPLA5Q7Z6Z6 429 aaPredicted RBP3.5□□□□□ -1.85
VPS13A-206ENST00000376646 LGI4Q8N135 537 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 STPG3Q8N7X2 389 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms