RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 SLC7A3Q8WY07 619 aa14.83□□□□□ -0.03
COL4A1-201ENST00000375820 GINM1Q9NU53 330 aa14.83□□□□□ -0.03
COL4A1-201ENST00000375820 EVI5O60447 810 aa14.83□□□□□ -0.03
COL4A1-201ENST00000375820 SLMAPQ14BN4 828 aa14.83□□□□□ -0.03
COL4A1-201ENST00000375820 IQCDQ96DY2 449 aa14.83□□□□□ -0.03
COL4A1-201ENST00000375820 SUCLA2Q9P2R7 463 aaPredicted RBP14.83□□□□□ -0.03
COL4A1-201ENST00000375820 ECEL1O95672 775 aa14.83□□□□□ -0.04
COL4A1-201ENST00000375820 HOXB7P09629 217 aa14.83□□□□□ -0.04
COL4A1-201ENST00000375820 DNAJC24Q6P3W2 148 aa14.83□□□□□ -0.04
COL4A1-201ENST00000375820 NLRP4Q96MN2 994 aa14.83□□□□□ -0.04
COL4A1-201ENST00000375820 AP5M1Q9H0R1 490 aa14.83□□□□□ -0.04
COL4A1-201ENST00000375820 CARMIL3Q8ND23 1372 aa14.83□□□□□ -0.04
COL4A1-201ENST00000375820 GOLGA8CPA6NN73 597 aa14.83□□□□□ -0.04
COL4A1-201ENST00000375820 TRIM37O94972 964 aa14.83□□□□□ -0.04
COL4A1-201ENST00000375820 USP17L8P0C7I0 530 aa14.83□□□□□ -0.04
COL4A1-201ENST00000375820 PHKG2P15735 406 aa14.83□□□□□ -0.04
COL4A1-201ENST00000375820 BAG6P46379 1132 aa14.83□□□□□ -0.04
COL4A1-201ENST00000375820 DHX9Q08211 1270 aaKnown RBP14.83□□□□□ -0.04
COL4A1-201ENST00000375820 ERFEQ4G0M1 354 aa14.83□□□□□ -0.04
COL4A1-201ENST00000375820 ZMYM4Q5VZL5 1548 aa14.83□□□□□ -0.04
COL4A1-201ENST00000375820 EDC4Q6P2E9 1401 aaKnown RBP14.83□□□□□ -0.04
COL4A1-201ENST00000375820 LRRD1A4D1F6 860 aa14.83□□□□□ -0.04
COL4A1-201ENST00000375820 TRIM67Q6ZTA4 783 aa14.83□□□□□ -0.04
COL4A1-201ENST00000375820 AMNQ9BXJ7 453 aa14.83□□□□□ -0.04
COL4A1-201ENST00000375820 TLK1Q9UKI8 766 aa14.83□□□□□ -0.04
COL4A1-201ENST00000375820 ASAP1Q9ULH1 1129 aa14.83□□□□□ -0.04
COL4A1-201ENST00000375820 CRKLP46109 303 aaKnown RBP14.83□□□□□ -0.04
COL4A1-201ENST00000375820 TMED1Q13445 227 aa14.83□□□□□ -0.04
COL4A1-201ENST00000375820 BBOF1Q8ND07 529 aa14.83□□□□□ -0.04
COL4A1-201ENST00000375820 P2RX5Q93086 422 aa14.83□□□□□ -0.04
COL4A1-201ENST00000375820 ACCSQ96QU6 501 aa14.83□□□□□ -0.04
COL4A1-201ENST00000375820 LMCD1Q9NZU5 365 aa14.83□□□□□ -0.04
COL4A1-201ENST00000375820 PSDA5PKW4 1024 aaPredicted RBP14.82□□□□□ -0.04
COL4A1-201ENST00000375820 KITP10721 976 aa14.82□□□□□ -0.04
COL4A1-201ENST00000375820 NPR1P16066 1061 aa14.82□□□□□ -0.04
COL4A1-201ENST00000375820 TRAPPC10P48553 1259 aa14.82□□□□□ -0.04
COL4A1-201ENST00000375820 BBS9Q3SYG4 887 aa14.82□□□□□ -0.04
COL4A1-201ENST00000375820 ANKRD20A4Q4UJ75 823 aa14.82□□□□□ -0.04
COL4A1-201ENST00000375820 ANKRD20A8PQ5CZ79 823 aa14.82□□□□□ -0.04
COL4A1-201ENST00000375820 ANKRD20A2Q5SQ80 823 aa14.82□□□□□ -0.04
COL4A1-201ENST00000375820 ANKRD20A1Q5TYW2 823 aa14.82□□□□□ -0.04
COL4A1-201ENST00000375820 UGGT2Q9NYU1 1516 aa14.82□□□□□ -0.04
COL4A1-201ENST00000375820 STK25O00506 426 aa14.82□□□□□ -0.04
COL4A1-201ENST00000375820 MT-ND3P03897 115 aa14.82□□□□□ -0.04
COL4A1-201ENST00000375820 SLC4A7Q9Y6M7 1214 aa14.82□□□□□ -0.04
COL4A1-201ENST00000375820 COL17A1Q9UMD9 1497 aaPredicted RBP14.82□□□□□ -0.04
COL4A1-201ENST00000375820 USP17L3A6NCW0 530 aa14.82□□□□□ -0.04
COL4A1-201ENST00000375820 USP17L4A6NCW7 530 aa14.82□□□□□ -0.04
COL4A1-201ENST00000375820 ACSL3O95573 720 aa14.82□□□□□ -0.04
COL4A1-201ENST00000375820 ZSCAN20P17040 1043 aaPredicted RBP14.82□□□□□ -0.04
COL4A1-201ENST00000375820 NOP14P78316 857 aaKnown RBP14.82□□□□□ -0.04
COL4A1-201ENST00000375820 ART3Q13508 389 aa14.82□□□□□ -0.04
COL4A1-201ENST00000375820 USP17L1Q7RTZ2 530 aa14.82□□□□□ -0.04
COL4A1-201ENST00000375820 TM6SF1Q9BZW5 370 aa14.82□□□□□ -0.04
COL4A1-201ENST00000375820 EPS15L1Q9UBC2 864 aa14.82□□□□□ -0.04
COL4A1-201ENST00000375820 NOVA2Q9UNW9 492 aaKnown RBP14.82□□□□□ -0.04
COL4A1-201ENST00000375820 EIF4E1BA6NMX2 242 aaKnown RBP14.82□□□□□ -0.04
COL4A1-201ENST00000375820 H0YCG3 227 aa14.82□□□□□ -0.04
COL4A1-201ENST00000375820 GOLGA8MH3BSY2 632 aa14.82□□□□□ -0.04
COL4A1-201ENST00000375820 ARL4AP40617 200 aa14.82□□□□□ -0.04
COL4A1-201ENST00000375820 AOC3Q16853 763 aa14.82□□□□□ -0.04
COL4A1-201ENST00000375820 LCORLQ8N3X6 602 aa14.82□□□□□ -0.04
COL4A1-201ENST00000375820 CTNND1O60716 968 aaKnown RBP14.82□□□□□ -0.04
COL4A1-201ENST00000375820 SSTR3P32745 418 aaPredicted RBP14.82□□□□□ -0.04
COL4A1-201ENST00000375820 GYS2P54840 703 aa14.82□□□□□ -0.04
COL4A1-201ENST00000375820 CYP27A1Q02318 531 aa14.82□□□□□ -0.04
COL4A1-201ENST00000375820 GAS2L3Q86XJ1 694 aa14.82□□□□□ -0.04
COL4A1-201ENST00000375820 PASD1Q8IV76 773 aa14.82□□□□□ -0.04
COL4A1-201ENST00000375820 FAM49AQ9H0Q0 323 aaPredicted RBP14.82□□□□□ -0.04
COL4A1-201ENST00000375820 LRRC4Q9HBW1 653 aa14.82□□□□□ -0.04
COL4A1-201ENST00000375820 TTLL1O95922 423 aa14.81□□□□□ -0.04
COL4A1-201ENST00000375820 BBS5Q8N3I7 341 aa14.81□□□□□ -0.04
COL4A1-201ENST00000375820 ZNF668Q96K58 619 aaPredicted RBP14.81□□□□□ -0.04
COL4A1-201ENST00000375820 AIFM3Q96NN9 605 aa14.81□□□□□ -0.04
COL4A1-201ENST00000375820 MIS12Q9H081 205 aa14.81□□□□□ -0.04
COL4A1-201ENST00000375820 NHEJ1Q9H9Q4 299 aaPredicted RBP14.81□□□□□ -0.04
COL4A1-201ENST00000375820 PRDM5Q9NQX1 630 aaPredicted RBP14.81□□□□□ -0.04
COL4A1-201ENST00000375820 NUP160Q12769 1436 aa14.81□□□□□ -0.04
COL4A1-201ENST00000375820 FMNL1O95466 1100 aaPredicted RBP14.81□□□□□ -0.04
COL4A1-201ENST00000375820 EIF4A3P38919 411 aaKnown RBP14.81□□□□□ -0.04
COL4A1-201ENST00000375820 RBM6P78332 1123 aaKnown RBP14.81□□□□□ -0.04
COL4A1-201ENST00000375820 KIF19Q2TAC6 998 aa14.81□□□□□ -0.04
COL4A1-201ENST00000375820 RETREG2Q8NC44 543 aa14.81□□□□□ -0.04
COL4A1-201ENST00000375820 PPP2R5EQ16537 467 aa14.81□□□□□ -0.04
COL4A1-201ENST00000375820 SIX6OS1Q8N1H7 587 aa14.81□□□□□ -0.04
COL4A1-201ENST00000375820 PDCD6IPQ8WUM4 868 aaKnown RBP14.81□□□□□ -0.04
COL4A1-201ENST00000375820 HNRNPCL2B2RXH8 293 aa14.81□□□□□ -0.04
COL4A1-201ENST00000375820 ANKRD65E5RJM6 399 aa14.81□□□□□ -0.04
COL4A1-201ENST00000375820 HNRNPCL1O60812 293 aaKnown RBP14.81□□□□□ -0.04
COL4A1-201ENST00000375820 CCND2P30279 289 aa14.81□□□□□ -0.04
COL4A1-201ENST00000375820 POLE2P56282 527 aa14.81□□□□□ -0.04
COL4A1-201ENST00000375820 LSG1Q9H089 658 aaKnown RBP14.81□□□□□ -0.04
COL4A1-201ENST00000375820 SCHIP1Q9P0W5 487 aaPredicted RBP14.81□□□□□ -0.04
COL4A1-201ENST00000375820 ITSN2Q9NZM3 1697 aa14.8□□□□□ -0.04
COL4A1-201ENST00000375820 CCDC195A0A1B0GUA6 201 aa14.8□□□□□ -0.04
COL4A1-201ENST00000375820 PMLP29590 882 aa14.8□□□□□ -0.04
COL4A1-201ENST00000375820 SLC8A1P32418 973 aa14.8□□□□□ -0.04
COL4A1-201ENST00000375820 SLITRK6Q9H5Y7 841 aa14.8□□□□□ -0.04
COL4A1-201ENST00000375820 PRPSAP2O60256 369 aa14.8□□□□□ -0.04
COL4A1-201ENST00000375820 DBNLQ9UJU6 430 aaKnown RBP14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms