RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 SASH1O94885 1247 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 PCCAP05165 728 aaPredicted RBP4.47□□□□□ -1.69
USH2A-202ENST00000366942 TXNP10599 105 aaKnown RBP4.47□□□□□ -1.69
USH2A-202ENST00000366942 CTSEP14091 401 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 VARSP26640 1264 aaKnown RBP4.47□□□□□ -1.69
USH2A-202ENST00000366942 THOP1P52888 689 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 KRT85P78386 507 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 UAP1L1Q3KQV9 507 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 ARHGAP18Q8N392 663 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 CCDC63Q8NA47 563 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 MCOLN3Q8TDD5 553 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 SECISBP2Q96T21 854 aaKnown RBP4.47□□□□□ -1.69
USH2A-202ENST00000366942 FTHL17Q9BXU8 183 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 CCDC134Q9H6E4 229 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 SEPT10Q9P0V9 454 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 SUCOQ9UBS9 1254 aaKnown RBP4.47□□□□□ -1.69
USH2A-202ENST00000366942 MRFAP1Q9Y605 127 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 EMILIN1Q9Y6C2 1016 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 PCF11O94913 1555 aaKnown RBP4.47□□□□□ -1.69
USH2A-202ENST00000366942 TBC1D3BA6NDS4 549 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 DDTLA6NHG4 134 aaPredicted RBP4.47□□□□□ -1.69
USH2A-202ENST00000366942 PSIP1O75475 530 aaKnown RBP4.47□□□□□ -1.69
USH2A-202ENST00000366942 RHOBTB1O94844 696 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 KRT15P19012 456 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 CXCR2P25025 360 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 MCM4P33991 863 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 JAK3P52333 1124 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 RBPJQ06330 500 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 GCKRQ14397 625 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 ASPRV1Q53RT3 343 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 TMEM31Q5JXX7 168 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 NOL9Q5SY16 702 aaKnown RBP4.47□□□□□ -1.69
USH2A-202ENST00000366942 SLFN12LQ6IEE8 588 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 FOXR1Q6PIV2 292 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 MIGA2Q7L4E1 593 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 PLA2G4DQ86XP0 818 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 CCDC13Q8IYE1 715 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 ZBTB38Q8NAP3 1195 aaPredicted RBP4.47□□□□□ -1.69
USH2A-202ENST00000366942 ARMC2Q8NEN0 867 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 DCLK3Q9C098 648 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 BCAS3Q9H6U6 928 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 HCN3Q9P1Z3 774 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 UXTQ9UBK9 157 aaPredicted RBP4.47□□□□□ -1.69
USH2A-202ENST00000366942 ANGPTL3Q9Y5C1 460 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 KDM3AQ9Y4C1 1321 aa4.46□□□□□ -1.69
USH2A-202ENST00000366942 TMX2-CTNND1H3BSU7 103 aa4.46□□□□□ -1.69
USH2A-202ENST00000366942 PSMA7O14818 248 aa4.46□□□□□ -1.69
USH2A-202ENST00000366942 CALUO43852 315 aaPredicted RBP4.46□□□□□ -1.69
USH2A-202ENST00000366942 ENTPD3O75355 529 aa4.46□□□□□ -1.69
USH2A-202ENST00000366942 LUC7L3O95232 432 aaKnown RBP4.46□□□□□ -1.69
USH2A-202ENST00000366942 SERPINC1P01008 464 aa4.46□□□□□ -1.69
USH2A-202ENST00000366942 SYPP08247 313 aa4.46□□□□□ -1.69
USH2A-202ENST00000366942 RALBP11234 206 aa4.46□□□□□ -1.69
USH2A-202ENST00000366942 PHBP35232 272 aa4.46□□□□□ -1.69
USH2A-202ENST00000366942 MCAMP43121 646 aa4.46□□□□□ -1.69
USH2A-202ENST00000366942 TMEM259Q4ZIN3 620 aa4.46□□□□□ -1.69
USH2A-202ENST00000366942 KIAA1755Q5JYT7 1200 aa4.46□□□□□ -1.69
USH2A-202ENST00000366942 WDR45BQ5MNZ6 344 aa4.46□□□□□ -1.69
USH2A-202ENST00000366942 DCUN1D2Q6PH85 259 aa4.46□□□□□ -1.69
USH2A-202ENST00000366942 DEFB128Q7Z7B8 93 aa4.46□□□□□ -1.69
USH2A-202ENST00000366942 TREML1Q86YW5 311 aa4.46□□□□□ -1.69
USH2A-202ENST00000366942 MAP7D3Q8IWC1 876 aa4.46□□□□□ -1.69
USH2A-202ENST00000366942 TDRD5Q8NAT2 981 aaKnown RBP4.46□□□□□ -1.69
USH2A-202ENST00000366942 NLNQ9BYT8 704 aa4.46□□□□□ -1.69
USH2A-202ENST00000366942 OSBPL5Q9H0X9 879 aaPredicted RBP4.46□□□□□ -1.69
USH2A-202ENST00000366942 RNF146Q9NTX7 359 aa4.46□□□□□ -1.69
USH2A-202ENST00000366942 SLTMQ9NWH9 1034 aaKnown RBP eCLIP4.46□□□□□ -1.69
USH2A-202ENST00000366942 TMX2Q9Y320 296 aa4.46□□□□□ -1.69
USH2A-202ENST00000366942 GGPS1O95749 300 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 ASPHQ12797 758 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 SGCGQ13326 291 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 PIK3AP1Q6ZUJ8 805 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 KIAA1328Q86T90 577 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 TTC30BQ8N4P2 665 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 ENOX1Q8TC92 643 aaKnown RBP4.46□□□□□ -1.7
USH2A-202ENST00000366942 MORC4Q8TE76 937 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 NAA15Q9BXJ9 866 aaKnown RBP4.46□□□□□ -1.7
USH2A-202ENST00000366942 NUSAP1Q9BXS6 441 aaKnown RBP4.46□□□□□ -1.7
USH2A-202ENST00000366942 PPP1R9AQ9ULJ8 1098 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 ATP10DQ9P241 1426 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 BICDL2A1A5D9 508 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 UNCXA6NJT0 531 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 PALM2-AKAP2B1ALY0 433 aaPredicted RBP4.46□□□□□ -1.7
USH2A-202ENST00000366942 CTNND1O60716 968 aaKnown RBP4.46□□□□□ -1.7
USH2A-202ENST00000366942 PYGLP06737 847 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 PRKAA1Q13131 559 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 UBXN2BQ14CS0 331 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 TMED2Q15363 201 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 TAF2Q6P1X5 1199 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 MICALCLQ6ZW33 695 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 ANKRD44Q8N8A2 993 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 MNS1Q8NEH6 495 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 ARHGEF26Q96DR7 871 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 SMARCAD1Q9H4L7 1026 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 ANAPC4Q9UJX5 808 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 APOBEC2Q9Y235 224 aaKnown RBP4.46□□□□□ -1.7
USH2A-202ENST00000366942 USP16Q9Y5T5 823 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 ABCB11O95342 1321 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 A0A1B0GVL5 298 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 OCM2P0CE71 109 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms