RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 CIITAP33076 1130 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 UBXN2AP68543 259 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 IL9RQ01113 521 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 TMEM259Q4ZIN3 620 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 USPL1Q5W0Q7 1092 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 RWDD4Q6NW29 188 aaKnown RBP11.01□□□□□ -0.65
CLIP1-202ENST00000358808 KLC3Q6P597 504 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 KCTD6Q8NC69 237 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 ABHD8Q96I13 439 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 IMPACTQ9P2X3 320 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 PFDN1O60925 122 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 FMNL1O95466 1100 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-202ENST00000358808 GOLGA8HP0CJ92 632 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 MYO1EQ12965 1108 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 ADAM9Q13443 819 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 ABCB5Q2M3G0 1257 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 OR6B2Q6IFH4 312 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 TRIM42Q8IWZ5 723 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 OTUD7AQ8TE49 926 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-202ENST00000358808 SLC7A3Q8WY07 619 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 ANP32DO95626 131 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 MSH2P43246 934 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 KIF19Q2TAC6 998 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 BLIDQ8IZY5 108 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 RUNDC3BQ96NL0 473 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 YIPF2Q9BWQ6 316 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 MED7O43513 233 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 ADKP55263 362 aaKnown RBP11.01□□□□□ -0.65
CLIP1-202ENST00000358808 TFAMQ00059 246 aaKnown RBP11.01□□□□□ -0.65
CLIP1-202ENST00000358808 ADCY1Q08828 1119 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 ADD3Q9UEY8 706 aaKnown RBP11.01□□□□□ -0.65
CLIP1-202ENST00000358808 RNF17Q9BXT8 1623 aaKnown RBP11□□□□□ -0.65
CLIP1-202ENST00000358808 CLRN2A0PK11 232 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 MYO1FO00160 1098 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 CFLARO15519 480 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 TMCC1O94876 653 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 HSPA6P17066 643 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 CCND2P30279 289 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 OCRLQ01968 901 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 CYP4A11Q02928 519 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 KHDRBS2Q5VWX1 349 aaKnown RBP11□□□□□ -0.65
CLIP1-202ENST00000358808 SLFN13Q68D06 897 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 KRT80Q6KB66 452 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 CAPN11Q9UMQ6 739 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 CREB3O43889 395 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 BTDP43251 543 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 ZNF75DP51815 510 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 OSTNP61366 133 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 PSMD2Q13200 908 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 MXD4Q14582 209 aaPredicted RBP11□□□□□ -0.65
CLIP1-202ENST00000358808 PCGF5Q86SE9 256 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 SRRM1Q8IYB3 904 aaKnown RBP11□□□□□ -0.65
CLIP1-202ENST00000358808 RASEFQ8IZ41 740 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 MYRIPQ8NFW9 859 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 SH3KBP1Q96B97 665 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 ZFYVE19Q96K21 471 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 TRIM15Q9C019 465 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 KMT5AQ9NQR1 393 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 PRDM5Q9NQX1 630 aaPredicted RBP11□□□□□ -0.65
CLIP1-202ENST00000358808 PHKG2P15735 406 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 USP14P54578 494 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 BASP1P80723 227 aaKnown RBP11□□□□□ -0.65
CLIP1-202ENST00000358808 ODR4Q5SWX8 454 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 SCYL3Q8IZE3 742 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 CMTR1Q8N1G2 835 aaKnown RBP11□□□□□ -0.65
CLIP1-202ENST00000358808 GJA10Q969M2 543 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 ZSCAN10Q96SZ4 725 aaPredicted RBP11□□□□□ -0.65
CLIP1-202ENST00000358808 DAAM1Q9Y4D1 1078 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 PCDHA1Q9Y5I3 950 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 ATP7BP35670 1465 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 CLTCL1P53675 1640 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 CLTAP09496 248 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 NCF2P19878 526 aaPredicted RBP11□□□□□ -0.65
CLIP1-202ENST00000358808 MAPK4P31152 587 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 TMED2Q15363 201 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 ARL13BQ3SXY8 428 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 ZNF577Q9BSK1 485 aa11□□□□□ -0.65
CLIP1-202ENST00000358808 PACSIN2Q9UNF0 486 aaPredicted RBP11□□□□□ -0.65
CLIP1-202ENST00000358808 OR52Z1P0C646 297 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 DRP2Q13474 957 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 CDC42BPGQ6DT37 1551 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 NEK8Q86SG6 692 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 TAGAPQ8N103 731 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 PIP4K2CQ8TBX8 421 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 NRBF2Q96F24 287 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 EDEM3Q9BZQ6 932 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 CBX8Q9HC52 389 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 NXF1Q9UBU9 619 aaKnown RBP10.99□□□□□ -0.65
CLIP1-202ENST00000358808 PARD3Q8TEW0 1356 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 KDM2BQ8NHM5 1336 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 SPATA31E1Q6ZUB1 1445 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 ZNF263O14978 683 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 SNX2O60749 519 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 VCPP55072 806 aaKnown RBP10.99□□□□□ -0.65
CLIP1-202ENST00000358808 WASHC5Q12768 1159 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 RNF207Q6ZRF8 634 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 SLC17A8Q8NDX2 589 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 PDCD6IPQ8WUM4 868 aaKnown RBP10.99□□□□□ -0.65
CLIP1-202ENST00000358808 DHX38Q92620 1227 aaKnown RBP10.99□□□□□ -0.65
CLIP1-202ENST00000358808 TRIM11Q96F44 468 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms