RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.03□□□□□ -0.48
RTN3-201ENST00000338850 IL17RBQ9NRM6 502 aa12.03□□□□□ -0.48
RTN3-201ENST00000338850 SRRDQ9UH36 339 aa12.03□□□□□ -0.48
RTN3-201ENST00000338850 PCDHA6Q9UN73 950 aa12.03□□□□□ -0.48
RTN3-201ENST00000338850 SLC45A1Q9Y2W3 748 aa12.03□□□□□ -0.48
RTN3-201ENST00000338850 PCDHA8Q9Y5H6 950 aa12.03□□□□□ -0.48
RTN3-201ENST00000338850 FLT1P17948 1338 aa12.03□□□□□ -0.48
RTN3-201ENST00000338850 DOCK1Q14185 1865 aa12.02□□□□□ -0.48
RTN3-201ENST00000338850 PARP1P09874 1014 aaKnown RBP12.02□□□□□ -0.49
RTN3-201ENST00000338850 CCNE1P24864 410 aa12.02□□□□□ -0.49
RTN3-201ENST00000338850 HNRNPH3P31942 346 aaKnown RBP12.02□□□□□ -0.49
RTN3-201ENST00000338850 MCM7P33993 719 aa12.02□□□□□ -0.49
RTN3-201ENST00000338850 ERVK-24P63145 666 aa12.02□□□□□ -0.49
RTN3-201ENST00000338850 KRT83P78385 493 aa12.02□□□□□ -0.49
RTN3-201ENST00000338850 AMPD3Q01432 767 aa12.02□□□□□ -0.49
RTN3-201ENST00000338850 TFAP4Q01664 338 aa12.02□□□□□ -0.49
RTN3-201ENST00000338850 GPS2Q13227 327 aa12.02□□□□□ -0.49
RTN3-201ENST00000338850 KLHL10Q6JEL2 608 aa12.02□□□□□ -0.49
RTN3-201ENST00000338850 TTI2Q6NXR4 508 aa12.02□□□□□ -0.49
RTN3-201ENST00000338850 WDR93Q6P2C0 686 aa12.02□□□□□ -0.49
RTN3-201ENST00000338850 C16orf86Q6ZW13 317 aa12.02□□□□□ -0.49
RTN3-201ENST00000338850 ZNF771Q7L3S4 317 aaPredicted RBP12.02□□□□□ -0.49
RTN3-201ENST00000338850 IRF2BP1Q8IU81 584 aa12.02□□□□□ -0.49
RTN3-201ENST00000338850 MB21D1Q8N884 522 aa12.02□□□□□ -0.49
RTN3-201ENST00000338850 NEDD1Q8NHV4 660 aa12.02□□□□□ -0.49
RTN3-201ENST00000338850 ERGIC2Q96RQ1 377 aa12.02□□□□□ -0.49
RTN3-201ENST00000338850 FUT8Q9BYC5 575 aa12.02□□□□□ -0.49
RTN3-201ENST00000338850 PARD6BQ9BYG5 372 aa12.02□□□□□ -0.49
RTN3-201ENST00000338850 ZNHIT6Q9NWK9 470 aaKnown RBP12.02□□□□□ -0.49
RTN3-201ENST00000338850 MCM9Q9NXL9 1143 aa12.02□□□□□ -0.49
RTN3-201ENST00000338850 STK17AQ9UEE5 414 aa12.02□□□□□ -0.49
RTN3-201ENST00000338850 BAZ2BQ9UIF8 2168 aaKnown RBP12.02□□□□□ -0.49
RTN3-201ENST00000338850 MYH7BA7E2Y1 1941 aa12.01□□□□□ -0.49
RTN3-201ENST00000338850 NDUFA10O95299 355 aa12.01□□□□□ -0.49
RTN3-201ENST00000338850 MYCP01106 439 aaPredicted RBP12.01□□□□□ -0.49
RTN3-201ENST00000338850 OR52Z1P0C646 297 aa12.01□□□□□ -0.49
RTN3-201ENST00000338850 HOXD10P28358 340 aa12.01□□□□□ -0.49
RTN3-201ENST00000338850 UBA7P41226 1012 aa12.01□□□□□ -0.49
RTN3-201ENST00000338850 PRCPP42785 496 aa12.01□□□□□ -0.49
RTN3-201ENST00000338850 STX17P56962 302 aa12.01□□□□□ -0.49
RTN3-201ENST00000338850 ITIH3Q06033 890 aa12.01□□□□□ -0.49
RTN3-201ENST00000338850 RRP1BQ14684 758 aaKnown RBP12.01□□□□□ -0.49
RTN3-201ENST00000338850 MTF1Q14872 753 aa12.01□□□□□ -0.49
RTN3-201ENST00000338850 SLC4A8Q2Y0W8 1093 aa12.01□□□□□ -0.49
RTN3-201ENST00000338850 DESI2Q9BSY9 194 aa12.01□□□□□ -0.49
RTN3-201ENST00000338850 EDEM3Q9BZQ6 932 aa12.01□□□□□ -0.49
RTN3-201ENST00000338850 LRRC27Q9C0I9 530 aa12.01□□□□□ -0.49
RTN3-201ENST00000338850 VIPAS39Q9H9C1 493 aa12.01□□□□□ -0.49
RTN3-201ENST00000338850 CALCOCO1Q9P1Z2 691 aa12.01□□□□□ -0.49
RTN3-201ENST00000338850 AGTPBP1Q9UPW5 1226 aa12.01□□□□□ -0.49
RTN3-201ENST00000338850 EPN1Q9Y6I3 576 aaPredicted RBP12.01□□□□□ -0.49
RTN3-201ENST00000338850 PHIPQ8WWQ0 1821 aa12□□□□□ -0.49
RTN3-201ENST00000338850 PVALEFA0A1B0GWK0 134 aa12□□□□□ -0.49
RTN3-201ENST00000338850 TARSL2A2RTX5 802 aaKnown RBP12□□□□□ -0.49
RTN3-201ENST00000338850 CTAGE15A4D2H0 777 aa12□□□□□ -0.49
RTN3-201ENST00000338850 SMIM22K7EJ46 135 aa12□□□□□ -0.49
RTN3-201ENST00000338850 EIF3JO75822 258 aaKnown RBP12□□□□□ -0.49
RTN3-201ENST00000338850 CTAGE8P0CG41 777 aa12□□□□□ -0.49
RTN3-201ENST00000338850 RASA1P20936 1047 aa12□□□□□ -0.49
RTN3-201ENST00000338850 KRT9P35527 623 aa12□□□□□ -0.49
RTN3-201ENST00000338850 CYLC1P35663 651 aaPredicted RBP12□□□□□ -0.49
RTN3-201ENST00000338850 CAP2P40123 477 aa12□□□□□ -0.49
RTN3-201ENST00000338850 FCGRTP55899 365 aa12□□□□□ -0.49
RTN3-201ENST00000338850 CKAP4Q07065 602 aaKnown RBP12□□□□□ -0.49
RTN3-201ENST00000338850 SEPT2Q15019 361 aa12□□□□□ -0.49
RTN3-201ENST00000338850 KARSQ15046 597 aaKnown RBP12□□□□□ -0.49
RTN3-201ENST00000338850 NONOQ15233 471 aaKnown RBP eCLIP12□□□□□ -0.49
RTN3-201ENST00000338850 LONRF2Q1L5Z9 754 aa12□□□□□ -0.49
RTN3-201ENST00000338850 MUM1L1Q5H9M0 696 aa12□□□□□ -0.49
RTN3-201ENST00000338850 FAM47AQ5JRC9 791 aa12□□□□□ -0.49
RTN3-201ENST00000338850 PAPD7Q5XG87 772 aaKnown RBP12□□□□□ -0.49
RTN3-201ENST00000338850 TRAPPC11Q7Z392 1133 aa12□□□□□ -0.49
RTN3-201ENST00000338850 CTAGE6Q86UF2 777 aa12□□□□□ -0.49
RTN3-201ENST00000338850 CTAGE4Q8IX94 777 aa12□□□□□ -0.49
RTN3-201ENST00000338850 TXLNBQ8N3L3 684 aa12□□□□□ -0.49
RTN3-201ENST00000338850 EXOC4Q96A65 974 aa12□□□□□ -0.49
RTN3-201ENST00000338850 PURBQ96QR8 312 aaKnown RBP12□□□□□ -0.49
RTN3-201ENST00000338850 NUP88Q99567 741 aaPredicted RBP12□□□□□ -0.49
RTN3-201ENST00000338850 TSGA10Q9BZW7 698 aa12□□□□□ -0.49
RTN3-201ENST00000338850 C6orf50Q9HD87 102 aa12□□□□□ -0.49
RTN3-201ENST00000338850 ZKSCAN7Q9P0L1 754 aaPredicted RBP12□□□□□ -0.49
RTN3-201ENST00000338850 MAGEC2Q9UBF1 373 aaPredicted RBP12□□□□□ -0.49
RTN3-201ENST00000338850 HERC5Q9UII4 1024 aaKnown RBP12□□□□□ -0.49
RTN3-201ENST00000338850 LUC7L2Q9Y383 392 aaKnown RBP12□□□□□ -0.49
RTN3-201ENST00000338850 MYPNQ86TC9 1320 aa12□□□□□ -0.49
RTN3-201ENST00000338850 PTPRFP10586 1907 aa11.99□□□□□ -0.49
RTN3-201ENST00000338850 EIF3CLB5ME19 914 aaKnown RBP11.99□□□□□ -0.49
RTN3-201ENST00000338850 CYTH3O43739 400 aa11.99□□□□□ -0.49
RTN3-201ENST00000338850 NMT2O60551 498 aa11.99□□□□□ -0.49
RTN3-201ENST00000338850 CLSTN1O94985 981 aa11.99□□□□□ -0.49
RTN3-201ENST00000338850 FGFR1OPO95684 399 aaKnown RBP11.99□□□□□ -0.49
RTN3-201ENST00000338850 TSPY3P0CV98 308 aa11.99□□□□□ -0.49
RTN3-201ENST00000338850 TSPY8P0CW00 308 aa11.99□□□□□ -0.49
RTN3-201ENST00000338850 CYP2D6P10635 497 aa11.99□□□□□ -0.49
RTN3-201ENST00000338850 GRK4P32298 578 aa11.99□□□□□ -0.49
RTN3-201ENST00000338850 FXR2P51116 673 aaKnown RBP eCLIP11.99□□□□□ -0.49
RTN3-201ENST00000338850 ZBED6P86452 979 aa11.99□□□□□ -0.49
RTN3-201ENST00000338850 UBXN1Q04323 297 aa11.99□□□□□ -0.49
RTN3-201ENST00000338850 PRKCZQ05513 592 aa11.99□□□□□ -0.49
RTN3-201ENST00000338850 SPP2Q13103 211 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms