RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 JADE2Q9NQC1 790 aa17.8■□□□□ 0.44
USHBP1-202ENST00000324554 MYH4Q9Y623 1939 aa17.8■□□□□ 0.44
USHBP1-202ENST00000324554 TARSL2A2RTX5 802 aaKnown RBP17.79■□□□□ 0.44
USHBP1-202ENST00000324554 TNNT3P45378 269 aaPredicted RBP17.79■□□□□ 0.44
USHBP1-202ENST00000324554 SPA17Q15506 151 aa17.79■□□□□ 0.44
USHBP1-202ENST00000324554 FOXR2Q6PJQ5 311 aa17.79■□□□□ 0.44
USHBP1-202ENST00000324554 CCDC84Q86UT8 332 aaPredicted RBP17.79■□□□□ 0.44
USHBP1-202ENST00000324554 GPIHBP1Q8IV16 184 aa17.79■□□□□ 0.44
USHBP1-202ENST00000324554 CAGE1Q8TC20 777 aa17.79■□□□□ 0.44
USHBP1-202ENST00000324554 SECISBP2LQ93073 1101 aaKnown RBP17.79■□□□□ 0.44
USHBP1-202ENST00000324554 RPGRIP1Q96KN7 1286 aa17.79■□□□□ 0.44
USHBP1-202ENST00000324554 TSGA10Q9BZW7 698 aa17.79■□□□□ 0.44
USHBP1-202ENST00000324554 DNAJC18Q9H819 358 aa17.79■□□□□ 0.44
USHBP1-202ENST00000324554 MMRN2Q9H8L6 949 aa17.79■□□□□ 0.44
USHBP1-202ENST00000324554 VIPAS39Q9H9C1 493 aa17.79■□□□□ 0.44
USHBP1-202ENST00000324554 MED4Q9NPJ6 270 aa17.79■□□□□ 0.44
USHBP1-202ENST00000324554 PIM2Q9P1W9 311 aa17.79■□□□□ 0.44
USHBP1-202ENST00000324554 HPCAL4Q9UM19 191 aa17.79■□□□□ 0.44
USHBP1-202ENST00000324554 CAPN6Q9Y6Q1 641 aa17.79■□□□□ 0.44
USHBP1-202ENST00000324554 RAD21O60216 631 aa17.79■□□□□ 0.44
USHBP1-202ENST00000324554 HLA-DOAP06340 250 aa17.79■□□□□ 0.44
USHBP1-202ENST00000324554 GCFC2P16383 781 aaKnown RBP17.79■□□□□ 0.44
USHBP1-202ENST00000324554 AARSP49588 968 aaKnown RBP eCLIP17.79■□□□□ 0.44
USHBP1-202ENST00000324554 C2orf54Q08AI8 447 aa17.79■□□□□ 0.44
USHBP1-202ENST00000324554 COASYQ13057 564 aa17.79■□□□□ 0.44
USHBP1-202ENST00000324554 PCDHA12Q9UN75 941 aa17.79■□□□□ 0.44
USHBP1-202ENST00000324554 ERCC3P19447 782 aa17.78■□□□□ 0.44
USHBP1-202ENST00000324554 MYOCDQ8IZQ8 938 aa17.78■□□□□ 0.44
USHBP1-202ENST00000324554 TSG101Q99816 390 aa17.78■□□□□ 0.44
USHBP1-202ENST00000324554 HINFPQ9BQA5 517 aa17.78■□□□□ 0.44
USHBP1-202ENST00000324554 FAM204AQ9H8W3 233 aa17.78■□□□□ 0.44
USHBP1-202ENST00000324554 MLXIPQ9HAP2 919 aa17.78■□□□□ 0.44
USHBP1-202ENST00000324554 LCMT1Q9UIC8 334 aa17.78■□□□□ 0.44
USHBP1-202ENST00000324554 TCP10L2B9ZVM9 353 aa17.78■□□□□ 0.44
USHBP1-202ENST00000324554 MARCH6O60337 910 aa17.78■□□□□ 0.44
USHBP1-202ENST00000324554 RNF40O75150 1001 aa17.78■□□□□ 0.44
USHBP1-202ENST00000324554 POLD1P28340 1107 aa17.78■□□□□ 0.44
USHBP1-202ENST00000324554 KIF11P52732 1056 aa17.78■□□□□ 0.44
USHBP1-202ENST00000324554 ZCWPW2Q504Y3 356 aa17.78■□□□□ 0.44
USHBP1-202ENST00000324554 HYIQ5T013 277 aa17.78■□□□□ 0.44
USHBP1-202ENST00000324554 IFIH1Q9BYX4 1025 aaKnown RBP17.78■□□□□ 0.44
USHBP1-202ENST00000324554 ACBD3Q9H3P7 528 aa17.78■□□□□ 0.44
USHBP1-202ENST00000324554 ARFGEF1Q9Y6D6 1849 aa17.77■□□□□ 0.44
USHBP1-202ENST00000324554 LRRC53A6NM62 1247 aa17.77■□□□□ 0.44
USHBP1-202ENST00000324554 LCA5LO95447 670 aa17.77■□□□□ 0.44
USHBP1-202ENST00000324554 MCM3P25205 808 aa17.77■□□□□ 0.44
USHBP1-202ENST00000324554 SEPT2Q15019 361 aa17.77■□□□□ 0.44
USHBP1-202ENST00000324554 CREG2Q8IUH2 290 aa17.77■□□□□ 0.44
USHBP1-202ENST00000324554 COG1Q8WTW3 980 aa17.77■□□□□ 0.44
USHBP1-202ENST00000324554 RIN2Q8WYP3 895 aaPredicted RBP17.77■□□□□ 0.44
USHBP1-202ENST00000324554 BAP1Q92560 729 aa17.77■□□□□ 0.44
USHBP1-202ENST00000324554 EHD4Q9H223 541 aa17.77■□□□□ 0.44
USHBP1-202ENST00000324554 SERPINA10Q9UK55 444 aa17.77■□□□□ 0.44
USHBP1-202ENST00000324554 PCDHA13Q9Y5I0 950 aa17.77■□□□□ 0.44
USHBP1-202ENST00000324554 MYH10P35580 1976 aa17.77■□□□□ 0.44
USHBP1-202ENST00000324554 KDM3AQ9Y4C1 1321 aa17.77■□□□□ 0.43
USHBP1-202ENST00000324554 USP17L15C9J2P7 530 aa17.77■□□□□ 0.43
USHBP1-202ENST00000324554 USP17L13C9JLJ4 530 aa17.77■□□□□ 0.43
USHBP1-202ENST00000324554 USP17L11C9JVI0 530 aa17.77■□□□□ 0.43
USHBP1-202ENST00000324554 USP17L18D6R9N7 530 aa17.77■□□□□ 0.43
USHBP1-202ENST00000324554 USP17L22D6RA61 530 aa17.77■□□□□ 0.43
USHBP1-202ENST00000324554 USP17L17D6RBQ6 530 aa17.77■□□□□ 0.43
USHBP1-202ENST00000324554 USP17L19D6RCP7 530 aa17.77■□□□□ 0.43
USHBP1-202ENST00000324554 USP17L20D6RJB6 530 aa17.77■□□□□ 0.43
USHBP1-202ENST00000324554 PRPF6O94906 941 aaKnown RBP17.77■□□□□ 0.43
USHBP1-202ENST00000324554 USP17L24Q0WX57 530 aa17.77■□□□□ 0.43
USHBP1-202ENST00000324554 MAP9Q49MG5 647 aa17.77■□□□□ 0.43
USHBP1-202ENST00000324554 FOXR1Q6PIV2 292 aa17.77■□□□□ 0.43
USHBP1-202ENST00000324554 USP17L6PQ6QN14 398 aa17.77■□□□□ 0.43
USHBP1-202ENST00000324554 RRAGAQ7L523 313 aa17.77■□□□□ 0.43
USHBP1-202ENST00000324554 PSMD1Q99460 953 aa17.77■□□□□ 0.43
USHBP1-202ENST00000324554 MTFR1LQ9H019 292 aa17.77■□□□□ 0.43
USHBP1-202ENST00000324554 SH2D4AQ9H788 454 aa17.77■□□□□ 0.43
USHBP1-202ENST00000324554 PANK4Q9NVE7 773 aa17.77■□□□□ 0.43
USHBP1-202ENST00000324554 SNX12Q9UMY4 172 aa17.77■□□□□ 0.43
USHBP1-202ENST00000324554 SHTN1A0MZ66 631 aa17.76■□□□□ 0.43
USHBP1-202ENST00000324554 EIF4A3P38919 411 aaKnown RBP17.76■□□□□ 0.43
USHBP1-202ENST00000324554 QRICH1Q2TAL8 776 aa17.76■□□□□ 0.43
USHBP1-202ENST00000324554 FAM26FQ5R3K3 315 aa17.76■□□□□ 0.43
USHBP1-202ENST00000324554 RSBN1LQ6PCB5 846 aaPredicted RBP17.76■□□□□ 0.43
USHBP1-202ENST00000324554 CCNI2Q6ZMN8 369 aaPredicted RBP17.76■□□□□ 0.43
USHBP1-202ENST00000324554 LEKR1Q6ZMV7 388 aa17.76■□□□□ 0.43
USHBP1-202ENST00000324554 CCDC155Q8N6L0 562 aa17.76■□□□□ 0.43
USHBP1-202ENST00000324554 TRIM58Q8NG06 486 aa17.76■□□□□ 0.43
USHBP1-202ENST00000324554 DRC1Q96MC2 740 aa17.76■□□□□ 0.43
USHBP1-202ENST00000324554 NT5C3AQ9H0P0 336 aa17.76■□□□□ 0.43
USHBP1-202ENST00000324554 TMEM51Q9NW97 253 aa17.76■□□□□ 0.43
USHBP1-202ENST00000324554 BCS1LQ9Y276 419 aa17.76■□□□□ 0.43
USHBP1-202ENST00000324554 E9PMD0 336 aa17.76■□□□□ 0.43
USHBP1-202ENST00000324554 USO1O60763 962 aaKnown RBP17.76■□□□□ 0.43
USHBP1-202ENST00000324554 MOCS3O95396 460 aa17.76■□□□□ 0.43
USHBP1-202ENST00000324554 FKBP1AP62942 108 aaKnown RBP17.76■□□□□ 0.43
USHBP1-202ENST00000324554 FKBP3Q00688 224 aaKnown RBP17.76■□□□□ 0.43
USHBP1-202ENST00000324554 DALRD3Q5D0E6 543 aaKnown RBP17.76■□□□□ 0.43
USHBP1-202ENST00000324554 CCDC17Q96LX7 622 aa17.76■□□□□ 0.43
USHBP1-202ENST00000324554 UIMC1Q96RL1 719 aa17.76■□□□□ 0.43
USHBP1-202ENST00000324554 NAP1L4Q99733 375 aaKnown RBP17.76■□□□□ 0.43
USHBP1-202ENST00000324554 FGFBP2Q9BYJ0 223 aa17.76■□□□□ 0.43
USHBP1-202ENST00000324554 DEF6Q9H4E7 631 aa17.76■□□□□ 0.43
USHBP1-202ENST00000324554 KIAA1024Q9UPX6 916 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms