RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 CDC37Q16543 378 aaPredicted RBP21.04■□□□□ 0.96
RTN4-201ENST00000317610 TTC19Q6DKK2 380 aaPredicted RBP21.04■□□□□ 0.96
RTN4-201ENST00000317610 B4GALNT4Q76KP1 1039 aa21.04■□□□□ 0.96
RTN4-201ENST00000317610 SPATS2Q86XZ4 545 aaKnown RBP21.04■□□□□ 0.96
RTN4-201ENST00000317610 SH2D3CQ8N5H7 860 aa21.04■□□□□ 0.96
RTN4-201ENST00000317610 CASKIN2Q8WXE0 1202 aa21.04■□□□□ 0.96
RTN4-201ENST00000317610 CEP95Q96GE4 821 aa21.04■□□□□ 0.96
RTN4-201ENST00000317610 LSM14BQ9BX40 385 aaKnown RBP21.04■□□□□ 0.96
RTN4-201ENST00000317610 LIG3P49916 1009 aa21.04■□□□□ 0.96
RTN4-201ENST00000317610 CCDC40Q4G0X9 1142 aa21.04■□□□□ 0.96
RTN4-201ENST00000317610 TRIM59Q8IWR1 403 aa21.04■□□□□ 0.96
RTN4-201ENST00000317610 EIF1ADQ8N9N8 165 aaKnown RBP21.04■□□□□ 0.96
RTN4-201ENST00000317610 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP21.04■□□□□ 0.96
RTN4-201ENST00000317610 KAT2BQ92831 832 aa21.04■□□□□ 0.96
RTN4-201ENST00000317610 AIPL1Q9NZN9 384 aa21.04■□□□□ 0.96
RTN4-201ENST00000317610 ZSCAN5CA6NGD5 496 aaPredicted RBP21.03■□□□□ 0.96
RTN4-201ENST00000317610 BTNL10A8MVZ5 291 aa21.03■□□□□ 0.96
RTN4-201ENST00000317610 GTF2A1P52655 376 aaPredicted RBP21.03■□□□□ 0.96
RTN4-201ENST00000317610 PPP4R3AQ6IN85 833 aa21.03■□□□□ 0.96
RTN4-201ENST00000317610 NBPF5PQ86XG9 351 aaPredicted RBP21.03■□□□□ 0.96
RTN4-201ENST00000317610 SETDB2Q96T68 719 aa21.03■□□□□ 0.96
RTN4-201ENST00000317610 TMEM59LQ9UK28 342 aa21.03■□□□□ 0.96
RTN4-201ENST00000317610 USP17L5A8MUK1 530 aa21.03■□□□□ 0.96
RTN4-201ENST00000317610 TRAF5O00463 557 aa21.03■□□□□ 0.96
RTN4-201ENST00000317610 NDUFAB1O14561 156 aa21.03■□□□□ 0.96
RTN4-201ENST00000317610 FTCDO95954 541 aa21.03■□□□□ 0.96
RTN4-201ENST00000317610 ERCC3P19447 782 aa21.03■□□□□ 0.96
RTN4-201ENST00000317610 GUCY2CP25092 1073 aa21.03■□□□□ 0.96
RTN4-201ENST00000317610 POLR2FP61218 127 aaKnown RBP21.03■□□□□ 0.96
RTN4-201ENST00000317610 ECM1Q16610 540 aa21.03■□□□□ 0.96
RTN4-201ENST00000317610 FAM26FQ5R3K3 315 aa21.03■□□□□ 0.96
RTN4-201ENST00000317610 ZC3H3Q8IXZ2 948 aaKnown RBP21.03■□□□□ 0.96
RTN4-201ENST00000317610 RNPC3Q96LT9 517 aaKnown RBP21.03■□□□□ 0.96
RTN4-201ENST00000317610 UBA5Q9GZZ9 404 aa21.03■□□□□ 0.96
RTN4-201ENST00000317610 RABEP2Q9H5N1 569 aa21.03■□□□□ 0.96
RTN4-201ENST00000317610 NARFQ9UHQ1 456 aa21.03■□□□□ 0.96
RTN4-201ENST00000317610 LEMD3Q9Y2U8 911 aa21.03■□□□□ 0.96
RTN4-201ENST00000317610 ESYT3A0FGR9 886 aa21.02■□□□□ 0.96
RTN4-201ENST00000317610 HYIQ5T013 277 aa21.02■□□□□ 0.96
RTN4-201ENST00000317610 TBC1D5Q92609 795 aa21.02■□□□□ 0.96
RTN4-201ENST00000317610 KRT12Q99456 494 aa21.02■□□□□ 0.96
RTN4-201ENST00000317610 PDHBP11177 359 aa21.01■□□□□ 0.95
RTN4-201ENST00000317610 INPP5BP32019 993 aa21.01■□□□□ 0.95
RTN4-201ENST00000317610 HSPA9P38646 679 aaKnown RBP21.01■□□□□ 0.95
RTN4-201ENST00000317610 KCTD16Q68DU8 428 aa21.01■□□□□ 0.95
RTN4-201ENST00000317610 IFT81Q8WYA0 676 aa21.01■□□□□ 0.95
RTN4-201ENST00000317610 SAMM50Q9Y512 469 aa21.01■□□□□ 0.95
RTN4-201ENST00000317610 PCDHA2Q9Y5H9 948 aa21.01■□□□□ 0.95
RTN4-201ENST00000317610 KIF13BQ9NQT8 1826 aa21.01■□□□□ 0.95
RTN4-201ENST00000317610 A0A087X0T9 212 aa21.01■□□□□ 0.95
RTN4-201ENST00000317610 GPR75-ASB3A0A0A6YYF3 556 aa21.01■□□□□ 0.95
RTN4-201ENST00000317610 SRRM3A6NNA2 597 aaPredicted RBP21.01■□□□□ 0.95
RTN4-201ENST00000317610 KCNQ2O43526 872 aa21.01■□□□□ 0.95
RTN4-201ENST00000317610 FAM228BP0C875 321 aa21.01■□□□□ 0.95
RTN4-201ENST00000317610 LSP1P33241 339 aa21.01■□□□□ 0.95
RTN4-201ENST00000317610 USP38Q8NB14 1042 aa21.01■□□□□ 0.95
RTN4-201ENST00000317610 EPN3Q9H201 632 aa21.01■□□□□ 0.95
RTN4-201ENST00000317610 GANQ9H2C0 597 aa21.01■□□□□ 0.95
RTN4-201ENST00000317610 PANK4Q9NVE7 773 aa21.01■□□□□ 0.95
RTN4-201ENST00000317610 PLIN4Q96Q06 1357 aa21.01■□□□□ 0.95
RTN4-201ENST00000317610 BTDP43251 543 aa21■□□□□ 0.95
RTN4-201ENST00000317610 ATP1A2P50993 1020 aa21■□□□□ 0.95
RTN4-201ENST00000317610 TNNC1P63316 161 aa21■□□□□ 0.95
RTN4-201ENST00000317610 C15orf52Q6ZUT6 534 aaKnown RBP21■□□□□ 0.95
RTN4-201ENST00000317610 COA7Q96BR5 231 aa21■□□□□ 0.95
RTN4-201ENST00000317610 ATP6V1G3Q96LB4 118 aa21■□□□□ 0.95
RTN4-201ENST00000317610 YY1AP1Q9H869 796 aa21■□□□□ 0.95
RTN4-201ENST00000317610 HMGB1P1B2RPK0 211 aaPredicted RBP21■□□□□ 0.95
RTN4-201ENST00000317610 NR1D1P20393 614 aa21■□□□□ 0.95
RTN4-201ENST00000317610 KIAA0753Q2KHM9 967 aa21■□□□□ 0.95
RTN4-201ENST00000317610 PPP1R18Q6NYC8 613 aa21■□□□□ 0.95
RTN4-201ENST00000317610 TPTE2Q6XPS3 522 aa21■□□□□ 0.95
RTN4-201ENST00000317610 HAS1Q92839 578 aa21■□□□□ 0.95
RTN4-201ENST00000317610 UTP18Q9Y5J1 556 aaKnown RBP eCLIP21■□□□□ 0.95
RTN4-201ENST00000317610 RAD51CO43502 376 aa20.99■□□□□ 0.95
RTN4-201ENST00000317610 ASPRV1Q53RT3 343 aa20.99■□□□□ 0.95
RTN4-201ENST00000317610 BHMG1C9JSJ3 638 aaPredicted RBP20.99■□□□□ 0.95
RTN4-201ENST00000317610 CLK2P49760 499 aaKnown RBP20.99■□□□□ 0.95
RTN4-201ENST00000317610 GUCY2FP51841 1108 aa20.99■□□□□ 0.95
RTN4-201ENST00000317610 KLHL30Q0D2K2 578 aa20.99■□□□□ 0.95
RTN4-201ENST00000317610 RAPGEF1Q13905 1077 aa20.99■□□□□ 0.95
RTN4-201ENST00000317610 C10orf76Q5T2E6 689 aa20.99■□□□□ 0.95
RTN4-201ENST00000317610 SWT1Q5T5J6 900 aaKnown RBP20.99■□□□□ 0.95
RTN4-201ENST00000317610 LRIG3Q6UXM1 1119 aa20.99■□□□□ 0.95
RTN4-201ENST00000317610 YTHDF3Q7Z739 585 aaKnown RBP20.99■□□□□ 0.95
RTN4-201ENST00000317610 TEX11Q8IYF3 940 aa20.99■□□□□ 0.95
RTN4-201ENST00000317610 CNPY4Q8N129 248 aa20.99■□□□□ 0.95
RTN4-201ENST00000317610 PACSIN1Q9BY11 444 aa20.99■□□□□ 0.95
RTN4-201ENST00000317610 FGFBP2Q9BYJ0 223 aa20.99■□□□□ 0.95
RTN4-201ENST00000317610 ISCUQ9H1K1 167 aa20.99■□□□□ 0.95
RTN4-201ENST00000317610 KCTD10Q9H3F6 313 aa20.99■□□□□ 0.95
RTN4-201ENST00000317610 MYH7BA7E2Y1 1941 aa20.99■□□□□ 0.95
RTN4-201ENST00000317610 MYH4Q9Y623 1939 aa20.98■□□□□ 0.95
RTN4-201ENST00000317610 PPP1R37O75864 691 aa20.98■□□□□ 0.95
RTN4-201ENST00000317610 SNHG28P0DPA3 235 aa20.98■□□□□ 0.95
RTN4-201ENST00000317610 ASIC2Q16515 512 aa20.98■□□□□ 0.95
RTN4-201ENST00000317610 PTGISQ16647 500 aa20.98■□□□□ 0.95
RTN4-201ENST00000317610 ZNF804AQ7Z570 1209 aa20.98■□□□□ 0.95
RTN4-201ENST00000317610 TAF1DQ9H5J8 278 aaPredicted RBP20.98■□□□□ 0.95
RTN4-201ENST00000317610 PLCB1Q9NQ66 1216 aa20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms