RNA–Protein interactions for RNA: ENST00000317516.11

TPM1-203, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 738 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-203ENST00000317516 GNAT1P11488 350 aa20.37■□□□□ 0.85
TPM1-203ENST00000317516 SEMA3FQ13275 785 aa20.37■□□□□ 0.85
TPM1-203ENST00000317516 ZNF713Q8N859 430 aaPredicted RBP20.37■□□□□ 0.85
TPM1-203ENST00000317516 DHX38Q92620 1227 aaKnown RBP20.37■□□□□ 0.85
TPM1-203ENST00000317516 GPR20Q99678 358 aa20.37■□□□□ 0.85
TPM1-203ENST00000317516 GLT8D2Q9H1C3 349 aa20.37■□□□□ 0.85
TPM1-203ENST00000317516 ZNF215Q9UL58 517 aaPredicted RBP20.37■□□□□ 0.85
TPM1-203ENST00000317516 NAP1L2Q9ULW6 460 aaPredicted RBP20.37■□□□□ 0.85
TPM1-203ENST00000317516 PCDHA6Q9UN73 950 aa20.37■□□□□ 0.85
TPM1-203ENST00000317516 PCDHA8Q9Y5H6 950 aa20.37■□□□□ 0.85
TPM1-203ENST00000317516 FOSP01100 380 aaPredicted RBP20.36■□□□□ 0.85
TPM1-203ENST00000317516 KCNJ6P48051 423 aa20.36■□□□□ 0.85
TPM1-203ENST00000317516 RABGGTBP53611 331 aa20.36■□□□□ 0.85
TPM1-203ENST00000317516 NAPAP54920 295 aa20.36■□□□□ 0.85
TPM1-203ENST00000317516 UBE2SQ16763 222 aa20.36■□□□□ 0.85
TPM1-203ENST00000317516 PPP1R18Q6NYC8 613 aa20.36■□□□□ 0.85
TPM1-203ENST00000317516 KCNB2Q92953 911 aa20.36■□□□□ 0.85
TPM1-203ENST00000317516 ATP6V0A1Q93050 837 aa20.36■□□□□ 0.85
TPM1-203ENST00000317516 PRDM12Q9H4Q4 367 aa20.36■□□□□ 0.85
TPM1-203ENST00000317516 BCAS3Q9H6U6 928 aa20.36■□□□□ 0.85
TPM1-203ENST00000317516 YBX2Q9Y2T7 364 aaKnown RBP20.36■□□□□ 0.85
TPM1-203ENST00000317516 KIAA1217Q5T5P2 1943 aa20.35■□□□□ 0.85
TPM1-203ENST00000317516 HSPA4P34932 840 aa20.35■□□□□ 0.85
TPM1-203ENST00000317516 ZNF200P98182 395 aaPredicted RBP20.35■□□□□ 0.85
TPM1-203ENST00000317516 MTMR1Q13613 665 aa20.35■□□□□ 0.85
TPM1-203ENST00000317516 PPP2R2DQ66LE6 453 aa20.35■□□□□ 0.85
TPM1-203ENST00000317516 WWC2Q6AWC2 1192 aa20.35■□□□□ 0.85
TPM1-203ENST00000317516 CNKSR3Q6P9H4 555 aa20.35■□□□□ 0.85
TPM1-203ENST00000317516 BLOC1S2Q6QNY1 142 aa20.35■□□□□ 0.85
TPM1-203ENST00000317516 SERINC5Q86VE9 423 aa20.35■□□□□ 0.85
TPM1-203ENST00000317516 JAKMIP1Q96N16 626 aaKnown RBP20.35■□□□□ 0.85
TPM1-203ENST00000317516 CNTNAP5Q8WYK1 1306 aa20.34■□□□□ 0.85
TPM1-203ENST00000317516 EFCAB14O75071 495 aa20.34■□□□□ 0.85
TPM1-203ENST00000317516 CXCL10P02778 98 aa20.34■□□□□ 0.85
TPM1-203ENST00000317516 SMIM10L2AP0DMW4 78 aa20.34■□□□□ 0.85
TPM1-203ENST00000317516 SMIM10L2BP0DMW5 78 aa20.34■□□□□ 0.85
TPM1-203ENST00000317516 PSMA5P28066 241 aa20.34■□□□□ 0.85
TPM1-203ENST00000317516 SP4Q02446 784 aa20.34■□□□□ 0.85
TPM1-203ENST00000317516 UTP14CQ5TAP6 766 aaKnown RBP20.34■□□□□ 0.85
TPM1-203ENST00000317516 SEPT1Q8WYJ6 367 aa20.34■□□□□ 0.85
TPM1-203ENST00000317516 RNPEPQ9H4A4 650 aa20.34■□□□□ 0.85
TPM1-203ENST00000317516 RIC8AQ9NPQ8 531 aa20.34■□□□□ 0.85
TPM1-203ENST00000317516 JADE2Q9NQC1 790 aa20.34■□□□□ 0.85
TPM1-203ENST00000317516 UBIAD1Q9Y5Z9 338 aa20.34■□□□□ 0.85
TPM1-203ENST00000317516 EMSYQ7Z589 1322 aa20.33■□□□□ 0.85
TPM1-203ENST00000317516 ABHD14A-ACY1A0A1B0GW23 586 aa20.33■□□□□ 0.85
TPM1-203ENST00000317516 ITGB5P18084 799 aa20.33■□□□□ 0.85
TPM1-203ENST00000317516 THPOP40225 353 aa20.33■□□□□ 0.85
TPM1-203ENST00000317516 METAP2P50579 478 aaKnown RBP eCLIP20.33■□□□□ 0.85
TPM1-203ENST00000317516 ADCY7P51828 1080 aa20.33■□□□□ 0.85
TPM1-203ENST00000317516 FUT2Q10981 343 aa20.33■□□□□ 0.85
TPM1-203ENST00000317516 TRIM71Q2Q1W2 868 aaKnown RBP20.33■□□□□ 0.85
TPM1-203ENST00000317516 ZNF618Q5T7W0 954 aa20.33■□□□□ 0.85
TPM1-203ENST00000317516 Q6ZUG5 572 aa20.33■□□□□ 0.85
TPM1-203ENST00000317516 HERC6Q8IVU3 1022 aa20.33■□□□□ 0.85
TPM1-203ENST00000317516 BARHL2Q9NY43 387 aa20.33■□□□□ 0.85
TPM1-203ENST00000317516 SNX14Q9Y5W7 946 aa20.33■□□□□ 0.85
TPM1-203ENST00000317516 SMCO2A6NFE2 343 aa20.32■□□□□ 0.84
TPM1-203ENST00000317516 RSPH10B2B2RC85 870 aa20.32■□□□□ 0.84
TPM1-203ENST00000317516 NBNO60934 754 aa20.32■□□□□ 0.84
TPM1-203ENST00000317516 ATP9AO75110 1047 aa20.32■□□□□ 0.84
TPM1-203ENST00000317516 RSPH10BP0C881 870 aa20.32■□□□□ 0.84
TPM1-203ENST00000317516 MYOGP15173 224 aa20.32■□□□□ 0.84
TPM1-203ENST00000317516 KCNA2P16389 499 aa20.32■□□□□ 0.84
TPM1-203ENST00000317516 HOXC8P31273 242 aa20.32■□□□□ 0.84
TPM1-203ENST00000317516 IKBKEQ14164 716 aa20.32■□□□□ 0.84
TPM1-203ENST00000317516 GPNMBQ14956 572 aa20.32■□□□□ 0.84
TPM1-203ENST00000317516 EPB41L2O43491 1005 aaKnown RBP20.31■□□□□ 0.84
TPM1-203ENST00000317516 CAND2O75155 1236 aa20.31■□□□□ 0.84
TPM1-203ENST00000317516 IGFBP4P22692 258 aa20.31■□□□□ 0.84
TPM1-203ENST00000317516 CDC27P30260 824 aa20.31■□□□□ 0.84
TPM1-203ENST00000317516 ADD1P35611 737 aaKnown RBP20.31■□□□□ 0.84
TPM1-203ENST00000317516 TCF7P36402 384 aaPredicted RBP20.31■□□□□ 0.84
TPM1-203ENST00000317516 HIC1Q14526 733 aa20.31■□□□□ 0.84
TPM1-203ENST00000317516 FBXL16Q8N461 479 aa20.31■□□□□ 0.84
TPM1-203ENST00000317516 BRF1Q92994 677 aa20.31■□□□□ 0.84
TPM1-203ENST00000317516 ZBED2Q9BTP6 218 aa20.31■□□□□ 0.84
TPM1-203ENST00000317516 FAM217BQ9NTX9 383 aaPredicted RBP20.31■□□□□ 0.84
TPM1-203ENST00000317516 SETD4Q9NVD3 440 aa20.31■□□□□ 0.84
TPM1-203ENST00000317516 NRCAMQ92823 1304 aa20.3■□□□□ 0.84
TPM1-203ENST00000317516 STXBP3O00186 592 aa20.3■□□□□ 0.84
TPM1-203ENST00000317516 TREHO43280 583 aa20.3■□□□□ 0.84
TPM1-203ENST00000317516 TLL1O43897 1013 aa20.3■□□□□ 0.84
TPM1-203ENST00000317516 LGR5O75473 907 aa20.3■□□□□ 0.84
TPM1-203ENST00000317516 CA3P07451 260 aa20.3■□□□□ 0.84
TPM1-203ENST00000317516 CPA1P15085 419 aa20.3■□□□□ 0.84
TPM1-203ENST00000317516 WDR5P61964 334 aaKnown RBP20.3■□□□□ 0.84
TPM1-203ENST00000317516 APOBRQ0VD83 1088 aa20.3■□□□□ 0.84
TPM1-203ENST00000317516 AP3B2Q13367 1082 aa20.3■□□□□ 0.84
TPM1-203ENST00000317516 TRIM50Q86XT4 487 aa20.3■□□□□ 0.84
TPM1-203ENST00000317516 TNPO1Q92973 898 aaKnown RBP20.3■□□□□ 0.84
TPM1-203ENST00000317516 WNT8BQ93098 351 aa20.3■□□□□ 0.84
TPM1-203ENST00000317516 MXRA8Q9BRK3 442 aa20.3■□□□□ 0.84
TPM1-203ENST00000317516 SMARCAD1Q9H4L7 1026 aa20.3■□□□□ 0.84
TPM1-203ENST00000317516 RPS6KB1P23443 525 aa20.29■□□□□ 0.84
TPM1-203ENST00000317516 AKAP17AQ02040 695 aaKnown RBP20.29■□□□□ 0.84
TPM1-203ENST00000317516 PFKFB3Q16875 520 aaPredicted RBP20.29■□□□□ 0.84
TPM1-203ENST00000317516 MCTP2Q6DN12 878 aa20.29■□□□□ 0.84
TPM1-203ENST00000317516 TYW1BQ6NUM6 668 aa20.29■□□□□ 0.84
TPM1-203ENST00000317516 TRAF7Q6Q0C0 670 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms