RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 MAP7D1Q3KQU3 841 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 PPP4R3AQ6IN85 833 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 TMEM154Q6P9G4 183 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 OLFM4Q6UX06 510 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 KRT28Q7Z3Y7 464 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 DZIP1Q86YF9 867 aaKnown RBP7.28□□□□□ -1.24
ZNF540-201ENST00000316433 NOSTRINQ8IVI9 506 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 FNBP4Q8N3X1 1017 aaPredicted RBP7.28□□□□□ -1.24
ZNF540-201ENST00000316433 ZNF653Q96CK0 615 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 RRP36Q96EU6 259 aaKnown RBP7.28□□□□□ -1.24
ZNF540-201ENST00000316433 IFT43Q96FT9 208 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 SDF4Q9BRK5 362 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 PPANQ9NQ55 473 aaKnown RBP7.28□□□□□ -1.24
ZNF540-201ENST00000316433 TUBA8Q9NY65 449 aaPredicted RBP7.28□□□□□ -1.24
ZNF540-201ENST00000316433 CROTQ9UKG9 612 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 SH3GLB1Q9Y371 365 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 LY75O60449 1722 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 MYH7BA7E2Y1 1941 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 A0A0U1RQJ8 604 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 GMNCA6NCL1 334 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 P4HA2O15460 535 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 SUPT3HO75486 399 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 DDAH1O94760 285 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 FGAP02671 866 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 CALM1P0DP23 149 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 CALM2P0DP24 149 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 CALM3P0DP25 149 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 SLC5A1P13866 664 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 TRIM21P19474 475 aaKnown RBP7.28□□□□□ -1.24
ZNF540-201ENST00000316433 MLH1P40692 756 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 APBA1Q02410 837 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 SEPT2Q15019 361 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 IFI16Q16666 785 aaKnown RBP7.28□□□□□ -1.24
ZNF540-201ENST00000316433 VPS37DQ86XT2 251 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 TMTC1Q8IUR5 882 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 PPP2R3CQ969Q6 453 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 EDEM3Q9BZQ6 932 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 VCXQ9H320 206 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 STRN4Q9NRL3 753 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 RABL2AQ9UBK7 228 aaPredicted RBP7.28□□□□□ -1.24
ZNF540-201ENST00000316433 ADD3Q9UEY8 706 aaKnown RBP7.28□□□□□ -1.24
ZNF540-201ENST00000316433 SPO11Q9Y5K1 396 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 LOXHD1Q8IVV2 1947 aa7.27□□□□□ -1.24
ZNF540-201ENST00000316433 A0A087WZG4 1122 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 C5orf60A6NFR6 353 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 SOWAHDA6NJG2 315 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 BHMG1C9JSJ3 638 aaPredicted RBP7.27□□□□□ -1.25
ZNF540-201ENST00000316433 LAD1O00515 517 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 ATP9BO43861 1147 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 SMARCA1P28370 1054 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 FUT2Q10981 343 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 KIF5AQ12840 1032 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 BYSLQ13895 437 aaKnown RBP7.27□□□□□ -1.25
ZNF540-201ENST00000316433 SH2D4BQ5SQS7 431 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 THOC7Q6I9Y2 204 aaKnown RBP7.27□□□□□ -1.25
ZNF540-201ENST00000316433 ZNF365Q70YC5 407 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 TBC1D1Q86TI0 1168 aaPredicted RBP7.27□□□□□ -1.25
ZNF540-201ENST00000316433 STK11IPQ8N1F8 1099 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 LSM14AQ8ND56 463 aaKnown RBP7.27□□□□□ -1.25
ZNF540-201ENST00000316433 CLIP3Q96DZ5 547 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 RPS6KC1Q96S38 1066 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 SEC62Q99442 399 aaKnown RBP7.27□□□□□ -1.25
ZNF540-201ENST00000316433 RETREG1Q9H6L5 497 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 KCNMB3Q9NPA1 279 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 MAN1B1Q9UKM7 699 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 ZNF536O15090 1300 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7.27□□□□□ -1.25
ZNF540-201ENST00000316433 TMEM247A6NEH6 219 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 CES2O00748 559 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 NDUFB5O43674 189 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 PDHA1P08559 390 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 VDRP11473 427 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 RFC5P40937 340 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 KLC1Q07866 573 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 NSUN2Q08J23 767 aaKnown RBP eCLIP7.27□□□□□ -1.25
ZNF540-201ENST00000316433 QPCTQ16769 361 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 GLE1Q53GS7 698 aaKnown RBP7.27□□□□□ -1.25
ZNF540-201ENST00000316433 CMPK2Q5EBM0 449 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 PAPD7Q5XG87 772 aaKnown RBP7.27□□□□□ -1.25
ZNF540-201ENST00000316433 KRT40Q6A162 431 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 SPICE1Q8N0Z3 855 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 TTC5Q8N0Z6 440 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 NR1H4Q96RI1 486 aaPredicted RBP7.27□□□□□ -1.25
ZNF540-201ENST00000316433 DNAJC7Q99615 494 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 RNF41Q9H4P4 317 aaPredicted RBP7.27□□□□□ -1.25
ZNF540-201ENST00000316433 ARHGEF10LQ9HCE6 1279 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 LNPEPQ9UIQ6 1025 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 RWDD2AQ9UIY3 292 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 SLC12A4Q9UP95 1085 aa7.27□□□□□ -1.25
ZNF540-201ENST00000316433 TRIM43BA6NCK2 446 aa7.26□□□□□ -1.25
ZNF540-201ENST00000316433 PRPF3O43395 683 aaKnown RBP7.26□□□□□ -1.25
ZNF540-201ENST00000316433 TPPPO94811 219 aa7.26□□□□□ -1.25
ZNF540-201ENST00000316433 HNRNPCP07910 306 aaKnown RBP eCLIP7.26□□□□□ -1.25
ZNF540-201ENST00000316433 PCK1P35558 622 aa7.26□□□□□ -1.25
ZNF540-201ENST00000316433 DPYDQ12882 1025 aa7.26□□□□□ -1.25
ZNF540-201ENST00000316433 USH1GQ495M9 461 aa7.26□□□□□ -1.25
ZNF540-201ENST00000316433 MEX3CQ5U5Q3 659 aaKnown RBP7.26□□□□□ -1.25
ZNF540-201ENST00000316433 OR52E8Q6IFG1 317 aa7.26□□□□□ -1.25
ZNF540-201ENST00000316433 LMBR1LQ6UX01 489 aa7.26□□□□□ -1.25
ZNF540-201ENST00000316433 PACS1Q6VY07 963 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms