RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 NAP1L4Q99733 375 aaKnown RBP12.75□□□□□ -0.37
CUX1-202ENST00000292538 CARD6Q9BX69 1037 aa12.75□□□□□ -0.37
CUX1-202ENST00000292538 EPC1Q9H2F5 836 aa12.75□□□□□ -0.37
CUX1-202ENST00000292538 KDM3AQ9Y4C1 1321 aa12.75□□□□□ -0.37
CUX1-202ENST00000292538 PVALEFA0A1B0GWK0 134 aa12.75□□□□□ -0.37
CUX1-202ENST00000292538 GAS7O60861 476 aa12.75□□□□□ -0.37
CUX1-202ENST00000292538 CYP11B2P19099 503 aa12.75□□□□□ -0.37
CUX1-202ENST00000292538 DNM2P50570 870 aa12.75□□□□□ -0.37
CUX1-202ENST00000292538 TGFB2P61812 414 aa12.75□□□□□ -0.37
CUX1-202ENST00000292538 GRIPAP1Q4V328 841 aa12.75□□□□□ -0.37
CUX1-202ENST00000292538 CYP26C1Q6V0L0 522 aa12.75□□□□□ -0.37
CUX1-202ENST00000292538 NSMFQ6X4W1 530 aa12.75□□□□□ -0.37
CUX1-202ENST00000292538 OR8K1Q8NGG5 319 aa12.75□□□□□ -0.37
CUX1-202ENST00000292538 EIF2AK1Q9BQI3 630 aaKnown RBP12.75□□□□□ -0.37
CUX1-202ENST00000292538 WDR18Q9BV38 432 aa12.75□□□□□ -0.37
CUX1-202ENST00000292538 LRRC27Q9C0I9 530 aa12.75□□□□□ -0.37
CUX1-202ENST00000292538 MYH8P13535 1937 aa12.74□□□□□ -0.37
CUX1-202ENST00000292538 ARP10275 920 aa12.74□□□□□ -0.37
CUX1-202ENST00000292538 MYCLP12524 364 aaPredicted RBP12.74□□□□□ -0.37
CUX1-202ENST00000292538 CASP5P51878 434 aa12.74□□□□□ -0.37
CUX1-202ENST00000292538 ARID5AQ03989 594 aa12.74□□□□□ -0.37
CUX1-202ENST00000292538 NLGN2Q8NFZ4 835 aa12.74□□□□□ -0.37
CUX1-202ENST00000292538 DYDC2Q96IM9 177 aa12.74□□□□□ -0.37
CUX1-202ENST00000292538 ZNF577Q9BSK1 485 aa12.74□□□□□ -0.37
CUX1-202ENST00000292538 SH2D4AQ9H788 454 aa12.74□□□□□ -0.37
CUX1-202ENST00000292538 MRPL11Q9Y3B7 192 aaKnown RBP12.74□□□□□ -0.37
CUX1-202ENST00000292538 MYH4Q9Y623 1939 aa12.74□□□□□ -0.37
CUX1-202ENST00000292538 PRPF6O94906 941 aaKnown RBP12.74□□□□□ -0.37
CUX1-202ENST00000292538 TFRCP02786 760 aaKnown RBP12.74□□□□□ -0.37
CUX1-202ENST00000292538 CYP27A1Q02318 531 aa12.74□□□□□ -0.37
CUX1-202ENST00000292538 APBA1Q02410 837 aa12.74□□□□□ -0.37
CUX1-202ENST00000292538 ARSHQ5FYA8 562 aa12.74□□□□□ -0.37
CUX1-202ENST00000292538 BTNL9Q6UXG8 535 aa12.74□□□□□ -0.37
CUX1-202ENST00000292538 KSR1Q8IVT5 923 aa12.74□□□□□ -0.37
CUX1-202ENST00000292538 IKZF4Q9H2S9 585 aa12.74□□□□□ -0.37
CUX1-202ENST00000292538 NLRC4Q9NPP4 1024 aa12.74□□□□□ -0.37
CUX1-202ENST00000292538 ZNHIT6Q9NWK9 470 aaKnown RBP12.74□□□□□ -0.37
CUX1-202ENST00000292538 RRP9O43818 475 aaKnown RBP12.73□□□□□ -0.37
CUX1-202ENST00000292538 KIF5CO60282 957 aa12.73□□□□□ -0.37
CUX1-202ENST00000292538 SPATA31C1P0DKV0 1188 aa12.73□□□□□ -0.37
CUX1-202ENST00000292538 EIF2AK2P19525 551 aaKnown RBP12.73□□□□□ -0.37
CUX1-202ENST00000292538 EPS15P42566 896 aa12.73□□□□□ -0.37
CUX1-202ENST00000292538 SP4Q02446 784 aa12.73□□□□□ -0.37
CUX1-202ENST00000292538 ANGEL2Q5VTE6 544 aaKnown RBP12.73□□□□□ -0.37
CUX1-202ENST00000292538 CENPPQ6IPU0 288 aa12.73□□□□□ -0.37
CUX1-202ENST00000292538 FAM83AQ86UY5 434 aa12.73□□□□□ -0.37
CUX1-202ENST00000292538 SFR1Q86XK3 245 aa12.73□□□□□ -0.37
CUX1-202ENST00000292538 BANK1Q8NDB2 785 aa12.73□□□□□ -0.37
CUX1-202ENST00000292538 REEP2Q9BRK0 252 aa12.73□□□□□ -0.37
CUX1-202ENST00000292538 NDST4Q9H3R1 872 aa12.73□□□□□ -0.37
CUX1-202ENST00000292538 EMILIN3Q9NT22 766 aa12.73□□□□□ -0.37
CUX1-202ENST00000292538 SMCHD1A6NHR9 2005 aa12.73□□□□□ -0.37
CUX1-202ENST00000292538 CTIFO43310 598 aaKnown RBP12.73□□□□□ -0.37
CUX1-202ENST00000292538 GCNT3O95395 438 aa12.73□□□□□ -0.37
CUX1-202ENST00000292538 KIF4BQ2VIQ3 1234 aa12.73□□□□□ -0.37
CUX1-202ENST00000292538 ARHGAP27Q6ZUM4 889 aa12.73□□□□□ -0.37
CUX1-202ENST00000292538 TMTC1Q8IUR5 882 aa12.73□□□□□ -0.37
CUX1-202ENST00000292538 GUF1Q8N442 669 aaKnown RBP12.73□□□□□ -0.37
CUX1-202ENST00000292538 WRNIP1Q96S55 665 aa12.73□□□□□ -0.37
CUX1-202ENST00000292538 MTFR1LQ9H019 292 aa12.73□□□□□ -0.37
CUX1-202ENST00000292538 RABGAP1Q9Y3P9 1069 aa12.73□□□□□ -0.37
CUX1-202ENST00000292538 CYP3A7-CYP3A51PA0A087WV96 503 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 EPHB6O15197 1021 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 CLIC2O15247 247 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 TBCAO75347 108 aaKnown RBP12.72□□□□□ -0.37
CUX1-202ENST00000292538 CYP3A7P24462 503 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 KCNJ6P48051 423 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 TNFAIP1Q13829 316 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 VWA3BQ502W6 1294 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 MIIPQ5JXC2 388 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 TCERG1LQ5VWI1 586 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 ZNF507Q8TCN5 953 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 RUSC1Q9BVN2 902 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 PUF60Q9UHX1 559 aaKnown RBP12.72□□□□□ -0.37
CUX1-202ENST00000292538 FEM1BQ9UK73 627 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 PLEKP08567 350 aaPredicted RBP12.72□□□□□ -0.37
CUX1-202ENST00000292538 MYBP10242 640 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 SLC12A3P55017 1021 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 PDE4CQ08493 712 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 SPIRE1Q08AE8 756 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 KCNA1Q09470 495 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 ADAM9Q13443 819 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 Q4G0T1 1027 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 CEP55Q53EZ4 464 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 RRAGAQ7L523 313 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 CACNA2D4Q7Z3S7 1137 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 KIAA1328Q86T90 577 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 NAA15Q9BXJ9 866 aaKnown RBP12.72□□□□□ -0.37
CUX1-202ENST00000292538 WDR11Q9BZH6 1224 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 EPN1Q9Y6I3 576 aaPredicted RBP12.72□□□□□ -0.37
CUX1-202ENST00000292538 RPA1P27694 616 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 MUM1L1Q5H9M0 696 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 MYCT1Q8N699 235 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 ZNF397Q8NF99 534 aaPredicted RBP12.72□□□□□ -0.37
CUX1-202ENST00000292538 FAM20AQ96MK3 541 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 PDCL3Q9H2J4 239 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 RANBP17Q9H2T7 1088 aaKnown RBP12.72□□□□□ -0.37
CUX1-202ENST00000292538 DEF6Q9H4E7 631 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 RPAP3Q9H6T3 665 aaPredicted RBP12.72□□□□□ -0.37
CUX1-202ENST00000292538 KCND1Q9NSA2 647 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms