RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 COASYQ13057 564 aa17.95■□□□□ 0.46
CTCF-201ENST00000264010 APOBEC3HQ6NTF7 200 aaKnown RBP17.95■□□□□ 0.46
CTCF-201ENST00000264010 CHP1Q99653 195 aa17.95■□□□□ 0.46
CTCF-201ENST00000264010 LSM14BQ9BX40 385 aaKnown RBP17.95■□□□□ 0.46
CTCF-201ENST00000264010 SERPINA10Q9UK55 444 aa17.95■□□□□ 0.46
CTCF-201ENST00000264010 RXRBP28702 533 aa17.95■□□□□ 0.46
CTCF-201ENST00000264010 DCAF17Q5H9S7 520 aaPredicted RBP17.95■□□□□ 0.46
CTCF-201ENST00000264010 MYH15Q9Y2K3 1946 aa17.95■□□□□ 0.46
CTCF-201ENST00000264010 ZEB2O60315 1214 aa17.94■□□□□ 0.46
CTCF-201ENST00000264010 SMC1AQ14683 1233 aaKnown RBP17.94■□□□□ 0.46
CTCF-201ENST00000264010 HDXQ7Z353 690 aa17.94■□□□□ 0.46
CTCF-201ENST00000264010 EMILIN3Q9NT22 766 aa17.94■□□□□ 0.46
CTCF-201ENST00000264010 NRAPQ86VF7 1730 aa17.94■□□□□ 0.46
CTCF-201ENST00000264010 E9PMD0 336 aa17.94■□□□□ 0.46
CTCF-201ENST00000264010 ATP8B1O43520 1251 aa17.94■□□□□ 0.46
CTCF-201ENST00000264010 CHRNA5P30532 468 aa17.94■□□□□ 0.46
CTCF-201ENST00000264010 DNA2P51530 1060 aa17.94■□□□□ 0.46
CTCF-201ENST00000264010 STAT2P52630 851 aa17.94■□□□□ 0.46
CTCF-201ENST00000264010 CACNB1Q02641 598 aaPredicted RBP17.94■□□□□ 0.46
CTCF-201ENST00000264010 CYP4A11Q02928 519 aa17.94■□□□□ 0.46
CTCF-201ENST00000264010 NIM1KQ8IY84 436 aa17.94■□□□□ 0.46
CTCF-201ENST00000264010 GDAP1L1Q96MZ0 367 aa17.94■□□□□ 0.46
CTCF-201ENST00000264010 MED15Q96RN5 788 aa17.94■□□□□ 0.46
CTCF-201ENST00000264010 ENTPD3O75355 529 aa17.94■□□□□ 0.46
CTCF-201ENST00000264010 GABPAQ06546 454 aa17.94■□□□□ 0.46
CTCF-201ENST00000264010 SF3A3Q12874 501 aaKnown RBP eCLIP17.94■□□□□ 0.46
CTCF-201ENST00000264010 GPIHBP1Q8IV16 184 aa17.94■□□□□ 0.46
CTCF-201ENST00000264010 TMEM139Q8IV31 216 aa17.94■□□□□ 0.46
CTCF-201ENST00000264010 TRIM58Q8NG06 486 aa17.94■□□□□ 0.46
CTCF-201ENST00000264010 PPM1EQ8WY54 764 aa17.94■□□□□ 0.46
CTCF-201ENST00000264010 JDP2Q8WYK2 163 aa17.94■□□□□ 0.46
CTCF-201ENST00000264010 RPGRIP1Q96KN7 1286 aa17.94■□□□□ 0.46
CTCF-201ENST00000264010 DOCK2Q92608 1830 aa17.94■□□□□ 0.46
CTCF-201ENST00000264010 POTEB3A0JP26 581 aa17.93■□□□□ 0.46
CTCF-201ENST00000264010 POTECB2RU33 542 aa17.93■□□□□ 0.46
CTCF-201ENST00000264010 C21orf2O43822 256 aa17.93■□□□□ 0.46
CTCF-201ENST00000264010 GAS7O60861 476 aa17.93■□□□□ 0.46
CTCF-201ENST00000264010 GCNT3O95395 438 aa17.93■□□□□ 0.46
CTCF-201ENST00000264010 IFI16Q16666 785 aaKnown RBP17.93■□□□□ 0.46
CTCF-201ENST00000264010 POTEBQ6S5H4 581 aa17.93■□□□□ 0.46
CTCF-201ENST00000264010 TPH2Q8IWU9 490 aa17.93■□□□□ 0.46
CTCF-201ENST00000264010 PARD6BQ9BYG5 372 aa17.93■□□□□ 0.46
CTCF-201ENST00000264010 ARMCX3Q9UH62 379 aaPredicted RBP17.93■□□□□ 0.46
CTCF-201ENST00000264010 KLRC4O43908 158 aa17.93■□□□□ 0.46
CTCF-201ENST00000264010 KIF4AO95239 1232 aa17.93■□□□□ 0.46
CTCF-201ENST00000264010 NDUFB10O96000 172 aa17.93■□□□□ 0.46
CTCF-201ENST00000264010 MATR3P43243 847 aaKnown RBP eCLIP17.93■□□□□ 0.46
CTCF-201ENST00000264010 NOP2P46087 812 aaKnown RBP17.93■□□□□ 0.46
CTCF-201ENST00000264010 PMS1P54277 932 aaKnown RBP17.93■□□□□ 0.46
CTCF-201ENST00000264010 ASIC2Q16515 512 aa17.93■□□□□ 0.46
CTCF-201ENST00000264010 CCDC93Q567U6 631 aa17.93■□□□□ 0.46
CTCF-201ENST00000264010 FAM20AQ96MK3 541 aa17.93■□□□□ 0.46
CTCF-201ENST00000264010 FAM184BQ9ULE4 1060 aa17.93■□□□□ 0.46
CTCF-201ENST00000264010 CACNA1SQ13698 1873 aa17.93■□□□□ 0.46
CTCF-201ENST00000264010 RAD17O75943 681 aa17.93■□□□□ 0.46
CTCF-201ENST00000264010 IRS2Q9Y4H2 1338 aa17.93■□□□□ 0.46
CTCF-201ENST00000264010 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.93■□□□□ 0.46
CTCF-201ENST00000264010 M0R2N6 131 aa17.92■□□□□ 0.46
CTCF-201ENST00000264010 ECM2O94769 699 aaPredicted RBP17.92■□□□□ 0.46
CTCF-201ENST00000264010 CETN1Q12798 172 aa17.92■□□□□ 0.46
CTCF-201ENST00000264010 MYCT1Q8N699 235 aa17.92■□□□□ 0.46
CTCF-201ENST00000264010 NOX5Q96PH1 765 aa17.92■□□□□ 0.46
CTCF-201ENST00000264010 SEPT11Q9NVA2 429 aaKnown RBP17.92■□□□□ 0.46
CTCF-201ENST00000264010 RABGAP1Q9Y3P9 1069 aa17.92■□□□□ 0.46
CTCF-201ENST00000264010 MYH6P13533 1939 aa17.92■□□□□ 0.46
CTCF-201ENST00000264010 MEIS1O00470 390 aa17.92■□□□□ 0.46
CTCF-201ENST00000264010 HOXA13P31271 388 aaPredicted RBP17.92■□□□□ 0.46
CTCF-201ENST00000264010 ERVK-24P63145 666 aa17.92■□□□□ 0.46
CTCF-201ENST00000264010 TAF1P21675 1872 aa17.92■□□□□ 0.46
CTCF-201ENST00000264010 SLC26A4O43511 780 aa17.92■□□□□ 0.46
CTCF-201ENST00000264010 SSR1P43307 286 aaKnown RBP17.92■□□□□ 0.46
CTCF-201ENST00000264010 SLC35G1Q2M3R5 365 aa17.92■□□□□ 0.46
CTCF-201ENST00000264010 TAX1BP1Q86VP1 789 aa17.92■□□□□ 0.46
CTCF-201ENST00000264010 SMCR8Q8TEV9 937 aaPredicted RBP17.92■□□□□ 0.46
CTCF-201ENST00000264010 CEP63Q96MT8 703 aa17.92■□□□□ 0.46
CTCF-201ENST00000264010 MTMR9Q96QG7 549 aa17.92■□□□□ 0.46
CTCF-201ENST00000264010 HERC5Q9UII4 1024 aaKnown RBP17.92■□□□□ 0.46
CTCF-201ENST00000264010 ENC1O14682 589 aa17.92■□□□□ 0.46
CTCF-201ENST00000264010 PBX1P40424 430 aa17.92■□□□□ 0.46
CTCF-201ENST00000264010 CYP27A1Q02318 531 aa17.92■□□□□ 0.46
CTCF-201ENST00000264010 KLHL30Q0D2K2 578 aa17.92■□□□□ 0.46
CTCF-201ENST00000264010 CEP89Q96ST8 783 aa17.92■□□□□ 0.46
CTCF-201ENST00000264010 POLR2FP61218 127 aaKnown RBP17.91■□□□□ 0.46
CTCF-201ENST00000264010 RTKN2Q8IZC4 609 aa17.91■□□□□ 0.46
CTCF-201ENST00000264010 OTUD6BQ8N6M0 293 aa17.91■□□□□ 0.46
CTCF-201ENST00000264010 ARHGEF35A5YM69 484 aa17.91■□□□□ 0.46
CTCF-201ENST00000264010 DDTLA6NHG4 134 aaPredicted RBP17.91■□□□□ 0.46
CTCF-201ENST00000264010 PLSCR1O15162 318 aa17.91■□□□□ 0.46
CTCF-201ENST00000264010 NR2F2P24468 414 aa17.91■□□□□ 0.46
CTCF-201ENST00000264010 EIF4A3P38919 411 aaKnown RBP17.91■□□□□ 0.46
CTCF-201ENST00000264010 PPP4R3CPQ6ZMV5 832 aa17.91■□□□□ 0.46
CTCF-201ENST00000264010 TTLL6Q8N841 843 aa17.91■□□□□ 0.46
CTCF-201ENST00000264010 EFCC1Q9HA90 598 aa17.91■□□□□ 0.46
CTCF-201ENST00000264010 MYH13Q9UKX3 1938 aa17.91■□□□□ 0.46
CTCF-201ENST00000264010 CCDC151A5D8V7 595 aa17.91■□□□□ 0.46
CTCF-201ENST00000264010 EIF3CLB5ME19 914 aaKnown RBP17.91■□□□□ 0.46
CTCF-201ENST00000264010 VAV2P52735 878 aa17.91■□□□□ 0.46
CTCF-201ENST00000264010 CLNS1AP54105 237 aaKnown RBP17.91■□□□□ 0.46
CTCF-201ENST00000264010 ATRIPQ8WXE1 791 aa17.91■□□□□ 0.46
CTCF-201ENST00000264010 EIF3CQ99613 913 aaKnown RBP17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms