RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 HDAC6Q9UBN7 1215 aa26.26■■□□□ 1.79
LSM4-201ENST00000252816 NOP56O00567 594 aaKnown RBP26.25■■□□□ 1.79
LSM4-201ENST00000252816 ACRP10323 421 aa26.25■■□□□ 1.79
LSM4-201ENST00000252816 SREBF1P36956 1147 aa26.25■■□□□ 1.79
LSM4-201ENST00000252816 MTMR1Q13613 665 aa26.25■■□□□ 1.79
LSM4-201ENST00000252816 CCDC12Q8WUD4 166 aaPredicted RBP26.25■■□□□ 1.79
LSM4-201ENST00000252816 CDHR1Q96JP9 859 aa26.25■■□□□ 1.79
LSM4-201ENST00000252816 BUD13Q9BRD0 619 aaKnown RBP eCLIP26.25■■□□□ 1.79
LSM4-201ENST00000252816 MXRA8Q9BRK3 442 aa26.25■■□□□ 1.79
LSM4-201ENST00000252816 TPCN1Q9ULQ1 816 aa26.25■■□□□ 1.79
LSM4-201ENST00000252816 EIF5BO60841 1220 aaKnown RBP26.24■■□□□ 1.79
LSM4-201ENST00000252816 LGALS2P05162 132 aa26.24■■□□□ 1.79
LSM4-201ENST00000252816 SP4Q02446 784 aa26.24■■□□□ 1.79
LSM4-201ENST00000252816 PTGISQ16647 500 aa26.24■■□□□ 1.79
LSM4-201ENST00000252816 TMEM240Q5SV17 173 aa26.24■■□□□ 1.79
LSM4-201ENST00000252816 C7orf31Q8N865 590 aa26.24■■□□□ 1.79
LSM4-201ENST00000252816 RNPC3Q96LT9 517 aaKnown RBP26.24■■□□□ 1.79
LSM4-201ENST00000252816 C6orf50Q9HD87 102 aa26.24■■□□□ 1.79
LSM4-201ENST00000252816 PKD2L1Q9P0L9 805 aa26.24■■□□□ 1.79
LSM4-201ENST00000252816 VPS54Q9P1Q0 977 aa26.24■■□□□ 1.79
LSM4-201ENST00000252816 GTF2IRD1Q9UHL9 959 aa26.24■■□□□ 1.79
LSM4-201ENST00000252816 CPLX1O14810 134 aa26.23■■□□□ 1.79
LSM4-201ENST00000252816 SSRP1Q08945 709 aaKnown RBP26.23■■□□□ 1.79
LSM4-201ENST00000252816 VWCEQ96DN2 955 aa26.23■■□□□ 1.79
LSM4-201ENST00000252816 SCLYQ96I15 445 aa26.23■■□□□ 1.79
LSM4-201ENST00000252816 IL23AQ9NPF7 189 aa26.23■■□□□ 1.79
LSM4-201ENST00000252816 H3BRB1 525 aa26.22■■□□□ 1.79
LSM4-201ENST00000252816 AK2P54819 239 aa26.22■■□□□ 1.79
LSM4-201ENST00000252816 ARHGAP4P98171 946 aa26.22■■□□□ 1.79
LSM4-201ENST00000252816 SCRN1Q12765 414 aa26.22■■□□□ 1.79
LSM4-201ENST00000252816 HIC1Q14526 733 aa26.22■■□□□ 1.79
LSM4-201ENST00000252816 C8orf34Q49A92 452 aa26.22■■□□□ 1.79
LSM4-201ENST00000252816 CEP55Q53EZ4 464 aa26.22■■□□□ 1.79
LSM4-201ENST00000252816 TRIM22Q8IYM9 498 aa26.22■■□□□ 1.79
LSM4-201ENST00000252816 REXO1Q8N1G1 1221 aaKnown RBP26.22■■□□□ 1.79
LSM4-201ENST00000252816 GIMAP8Q8ND71 665 aaPredicted RBP26.22■■□□□ 1.79
LSM4-201ENST00000252816 CRYGNQ8WXF5 182 aa26.22■■□□□ 1.79
LSM4-201ENST00000252816 TUT1Q9H6E5 874 aaKnown RBP26.22■■□□□ 1.79
LSM4-201ENST00000252816 KCNH7Q9NS40 1196 aa26.22■■□□□ 1.79
LSM4-201ENST00000252816 NOD1Q9Y239 953 aa26.22■■□□□ 1.79
LSM4-201ENST00000252816 MAFGO15525 162 aa26.21■■□□□ 1.79
LSM4-201ENST00000252816 ARP10275 920 aa26.21■■□□□ 1.79
LSM4-201ENST00000252816 GNA11P29992 359 aa26.21■■□□□ 1.79
LSM4-201ENST00000252816 ZNF365Q70YC5 407 aa26.21■■□□□ 1.79
LSM4-201ENST00000252816 TRIM50Q86XT4 487 aa26.21■■□□□ 1.79
LSM4-201ENST00000252816 RASGRP4Q8TDF6 673 aa26.21■■□□□ 1.79
LSM4-201ENST00000252816 MEIS1O00470 390 aa26.2■■□□□ 1.78
LSM4-201ENST00000252816 PFKFB2O60825 505 aa26.2■■□□□ 1.78
LSM4-201ENST00000252816 ZNF200P98182 395 aaPredicted RBP26.2■■□□□ 1.78
LSM4-201ENST00000252816 UTP14CQ5TAP6 766 aaKnown RBP26.2■■□□□ 1.78
LSM4-201ENST00000252816 GPR153Q6NV75 609 aa26.2■■□□□ 1.78
LSM4-201ENST00000252816 CCDC148Q8NFR7 591 aa26.2■■□□□ 1.78
LSM4-201ENST00000252816 DHX38Q92620 1227 aaKnown RBP26.2■■□□□ 1.78
LSM4-201ENST00000252816 SLKQ9H2G2 1235 aaPredicted RBP26.2■■□□□ 1.78
LSM4-201ENST00000252816 SH3GLB2Q9NR46 395 aa26.2■■□□□ 1.78
LSM4-201ENST00000252816 PITPNM1O00562 1244 aa26.19■■□□□ 1.78
LSM4-201ENST00000252816 DTNBO60941 627 aa26.19■■□□□ 1.78
LSM4-201ENST00000252816 DEXIO95424 95 aa26.19■■□□□ 1.78
LSM4-201ENST00000252816 PSRC1Q6PGN9 363 aaPredicted RBP26.19■■□□□ 1.78
LSM4-201ENST00000252816 CPLX2Q6PUV4 134 aaKnown RBP26.19■■□□□ 1.78
LSM4-201ENST00000252816 AIFM3Q96NN9 605 aa26.19■■□□□ 1.78
LSM4-201ENST00000252816 GSTTP1A0A1W2PQM5 241 aa26.18■■□□□ 1.78
LSM4-201ENST00000252816 FAM86B1E9PN63 330 aa26.18■■□□□ 1.78
LSM4-201ENST00000252816 CYP3A4P08684 503 aa26.18■■□□□ 1.78
LSM4-201ENST00000252816 FAM86B2P0C5J1 330 aa26.18■■□□□ 1.78
LSM4-201ENST00000252816 BFSP2Q13515 415 aa26.18■■□□□ 1.78
LSM4-201ENST00000252816 ANKRD1Q15327 319 aa26.18■■□□□ 1.78
LSM4-201ENST00000252816 RASIP1Q5U651 963 aa26.18■■□□□ 1.78
LSM4-201ENST00000252816 Q7L0L9 218 aa26.18■■□□□ 1.78
LSM4-201ENST00000252816 BICD2Q8TD16 824 aa26.18■■□□□ 1.78
LSM4-201ENST00000252816 AGO4Q9HCK5 861 aaKnown RBP26.18■■□□□ 1.78
LSM4-201ENST00000252816 IQCF3P0C7M6 154 aa26.17■■□□□ 1.78
LSM4-201ENST00000252816 SMIM10L2AP0DMW4 78 aa26.17■■□□□ 1.78
LSM4-201ENST00000252816 SMIM10L2BP0DMW5 78 aa26.17■■□□□ 1.78
LSM4-201ENST00000252816 HOXC8P31273 242 aa26.17■■□□□ 1.78
LSM4-201ENST00000252816 TCF7P36402 384 aaPredicted RBP26.17■■□□□ 1.78
LSM4-201ENST00000252816 ZNF76P36508 570 aa26.17■■□□□ 1.78
LSM4-201ENST00000252816 NEK4P51957 841 aa26.17■■□□□ 1.78
LSM4-201ENST00000252816 ITGB3BPQ13352 177 aaPredicted RBP26.17■■□□□ 1.78
LSM4-201ENST00000252816 MCTP2Q6DN12 878 aa26.17■■□□□ 1.78
LSM4-201ENST00000252816 RETREG2Q8NC44 543 aa26.17■■□□□ 1.78
LSM4-201ENST00000252816 SEPT1Q8WYJ6 367 aa26.17■■□□□ 1.78
LSM4-201ENST00000252816 WNT8BQ93098 351 aa26.17■■□□□ 1.78
LSM4-201ENST00000252816 IGLV3-22A0A075B6J6 115 aa26.16■■□□□ 1.78
LSM4-201ENST00000252816 LARGE1O95461 756 aa26.16■■□□□ 1.78
LSM4-201ENST00000252816 CTDNEP1O95476 244 aa26.16■■□□□ 1.78
LSM4-201ENST00000252816 NLRP5P59047 1200 aa26.16■■□□□ 1.78
LSM4-201ENST00000252816 NIPA1Q7RTP0 329 aa26.16■■□□□ 1.78
LSM4-201ENST00000252816 CAGE1Q8TC20 777 aa26.16■■□□□ 1.78
LSM4-201ENST00000252816 HERVK_113Q902F9 699 aa26.16■■□□□ 1.78
LSM4-201ENST00000252816 JPH1Q9HDC5 661 aaPredicted RBP26.16■■□□□ 1.78
LSM4-201ENST00000252816 CXXC1Q9P0U4 656 aaPredicted RBP26.16■■□□□ 1.78
LSM4-201ENST00000252816 NFASCO94856 1347 aa26.15■■□□□ 1.78
LSM4-201ENST00000252816 EDIL3O43854 480 aa26.15■■□□□ 1.78
LSM4-201ENST00000252816 FGBP02675 491 aa26.15■■□□□ 1.78
LSM4-201ENST00000252816 SMAD3P84022 425 aaKnown RBP26.15■■□□□ 1.78
LSM4-201ENST00000252816 PTK7Q13308 1070 aa26.15■■□□□ 1.78
LSM4-201ENST00000252816 ME3Q16798 604 aa26.15■■□□□ 1.78
LSM4-201ENST00000252816 TRIM71Q2Q1W2 868 aaKnown RBP26.15■■□□□ 1.78
LSM4-201ENST00000252816 FAM109BQ6ICB4 259 aaPredicted RBP26.15■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms