RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 CMTR1Q8N1G2 835 aaKnown RBP14.98□□□□□ -0.01
LDLR-201ENST00000252444 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.98□□□□□ -0.01
LDLR-201ENST00000252444 MAK16Q9BXY0 300 aaKnown RBP14.98□□□□□ -0.01
LDLR-201ENST00000252444 KDM3BQ7LBC6 1761 aa14.98□□□□□ -0.01
LDLR-201ENST00000252444 NDUFB10O96000 172 aa14.98□□□□□ -0.01
LDLR-201ENST00000252444 AFPP02771 609 aaKnown RBP14.98□□□□□ -0.01
LDLR-201ENST00000252444 ZSCAN20P17040 1043 aaPredicted RBP14.98□□□□□ -0.01
LDLR-201ENST00000252444 CNPY4Q8N129 248 aa14.98□□□□□ -0.01
LDLR-201ENST00000252444 NKRFO15226 690 aaKnown RBP eCLIP14.97□□□□□ -0.01
LDLR-201ENST00000252444 ASAP2O43150 1006 aa14.97□□□□□ -0.01
LDLR-201ENST00000252444 VIL1P09327 827 aaKnown RBP14.97□□□□□ -0.01
LDLR-201ENST00000252444 DDR1Q08345 913 aa14.97□□□□□ -0.01
LDLR-201ENST00000252444 NT5C1BQ96P26 610 aa14.97□□□□□ -0.01
LDLR-201ENST00000252444 GOLGA6L7A0A1B0GV03 622 aa14.97□□□□□ -0.01
LDLR-201ENST00000252444 STXBP3O00186 592 aa14.97□□□□□ -0.01
LDLR-201ENST00000252444 DDIT3P35638 169 aa14.97□□□□□ -0.01
LDLR-201ENST00000252444 QARSP47897 775 aaKnown RBP14.97□□□□□ -0.01
LDLR-201ENST00000252444 ENOX2Q16206 610 aaKnown RBP14.97□□□□□ -0.01
LDLR-201ENST00000252444 SEPT14Q6ZU15 432 aa14.97□□□□□ -0.01
LDLR-201ENST00000252444 PDZD4Q76G19 769 aaPredicted RBP14.97□□□□□ -0.01
LDLR-201ENST00000252444 TRMT1LQ7Z2T5 733 aaKnown RBP14.97□□□□□ -0.01
LDLR-201ENST00000252444 IL17RAQ96F46 866 aa14.97□□□□□ -0.01
LDLR-201ENST00000252444 ZMYND12Q9H0C1 365 aa14.97□□□□□ -0.01
LDLR-201ENST00000252444 DEFB129Q9H1M3 183 aa14.97□□□□□ -0.01
LDLR-201ENST00000252444 PDE6CP51160 858 aa14.97□□□□□ -0.01
LDLR-201ENST00000252444 MYL7Q01449 175 aa14.97□□□□□ -0.01
LDLR-201ENST00000252444 INTS8Q75QN2 995 aaKnown RBP14.97□□□□□ -0.01
LDLR-201ENST00000252444 ZC3H4Q9UPT8 1303 aaKnown RBP14.97□□□□□ -0.01
LDLR-201ENST00000252444 KPNA6O60684 536 aa14.97□□□□□ -0.01
LDLR-201ENST00000252444 PDHBP11177 359 aa14.97□□□□□ -0.01
LDLR-201ENST00000252444 SECISBP2LQ93073 1101 aaKnown RBP14.97□□□□□ -0.01
LDLR-201ENST00000252444 ZNF830Q96NB3 372 aaPredicted RBP14.97□□□□□ -0.01
LDLR-201ENST00000252444 ZNF302Q9NR11 478 aa14.97□□□□□ -0.01
LDLR-201ENST00000252444 TCRBV5S4A2TA0A5A2 114 aa14.96□□□□□ -0.01
LDLR-201ENST00000252444 MAGEB2O15479 319 aa14.96□□□□□ -0.01
LDLR-201ENST00000252444 GADD45BO75293 160 aaPredicted RBP14.96□□□□□ -0.01
LDLR-201ENST00000252444 IFFO1Q0D2I5 559 aa14.96□□□□□ -0.01
LDLR-201ENST00000252444 SMC1AQ14683 1233 aaKnown RBP14.96□□□□□ -0.01
LDLR-201ENST00000252444 NAPGQ99747 312 aaPredicted RBP14.96□□□□□ -0.01
LDLR-201ENST00000252444 VPS16Q9H269 839 aa14.96□□□□□ -0.01
LDLR-201ENST00000252444 ZHX1Q9UKY1 873 aaPredicted RBP14.96□□□□□ -0.01
LDLR-201ENST00000252444 CICQ96RK0 1608 aaPredicted RBP14.96□□□□□ -0.01
LDLR-201ENST00000252444 LRRIQ4A6NIV6 560 aa14.96□□□□□ -0.01
LDLR-201ENST00000252444 THAP12O43422 761 aa14.96□□□□□ -0.01
LDLR-201ENST00000252444 ICAM1P05362 532 aa14.96□□□□□ -0.01
LDLR-201ENST00000252444 CCDC122Q5T0U0 273 aa14.96□□□□□ -0.01
LDLR-201ENST00000252444 PRKAG2Q9UGJ0 569 aa14.96□□□□□ -0.01
LDLR-201ENST00000252444 ZBTB22O15209 634 aa14.96□□□□□ -0.01
LDLR-201ENST00000252444 XRCC6P12956 609 aaKnown RBP eCLIP14.96□□□□□ -0.01
LDLR-201ENST00000252444 VAV2P52735 878 aa14.96□□□□□ -0.01
LDLR-201ENST00000252444 MYPNQ86TC9 1320 aa14.96□□□□□ -0.01
LDLR-201ENST00000252444 COL22A1Q8NFW1 1626 aaPredicted RBP14.96□□□□□ -0.01
LDLR-201ENST00000252444 SHTN1A0MZ66 631 aa14.96□□□□□ -0.01
LDLR-201ENST00000252444 DYNC1I1O14576 645 aa14.96□□□□□ -0.01
LDLR-201ENST00000252444 ANXA13P27216 316 aa14.96□□□□□ -0.01
LDLR-201ENST00000252444 PAGE5Q96GU1 130 aa14.96□□□□□ -0.01
LDLR-201ENST00000252444 HESX1Q9UBX0 185 aa14.96□□□□□ -0.01
LDLR-201ENST00000252444 TMX2Q9Y320 296 aa14.96□□□□□ -0.01
LDLR-201ENST00000252444 EPHX2P34913 555 aa14.96□□□□□ -0.02
LDLR-201ENST00000252444 MYO1EQ12965 1108 aa14.96□□□□□ -0.02
LDLR-201ENST00000252444 KARSQ15046 597 aaKnown RBP14.96□□□□□ -0.02
LDLR-201ENST00000252444 POMGNT1Q8WZA1 660 aa14.96□□□□□ -0.02
LDLR-201ENST00000252444 AFDNP55196 1824 aaKnown RBP14.95□□□□□ -0.02
LDLR-201ENST00000252444 CNTNAP5Q8WYK1 1306 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 PABPN1LA6NDY0 278 aaKnown RBP14.95□□□□□ -0.02
LDLR-201ENST00000252444 SLU7O95391 586 aaKnown RBP14.95□□□□□ -0.02
LDLR-201ENST00000252444 EYA4O95677 639 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 LMAN1P49257 510 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 COPB1P53618 953 aaKnown RBP14.95□□□□□ -0.02
LDLR-201ENST00000252444 CEP55Q53EZ4 464 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 LSM14BQ9BX40 385 aaKnown RBP14.95□□□□□ -0.02
LDLR-201ENST00000252444 BLZF1Q9H2G9 400 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 RAVER2Q9HCJ3 691 aaKnown RBP14.95□□□□□ -0.02
LDLR-201ENST00000252444 SCN11AQ9UI33 1791 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 UNCXA6NJT0 531 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 PLCG1P19174 1290 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 CNGA1P29973 690 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 MAPK4P31152 587 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 DACT2Q5SW24 774 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 NIPA1Q7RTP0 329 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 FAM186BQ8IYM0 893 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 GPRC5AQ8NFJ5 357 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 CCDC102AQ96A19 550 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 KIAA1683Q9H0B3 1180 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.95□□□□□ -0.028e-10■□□□□ 8.4
LDLR-201ENST00000252444 DLG5Q8TDM6 1919 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 MANSC4A6NHS7 340 aaPredicted RBP14.95□□□□□ -0.02
LDLR-201ENST00000252444 HNRNPDLO14979 420 aaKnown RBP14.95□□□□□ -0.02
LDLR-201ENST00000252444 FAM47CQ5HY64 1035 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 TRIM58Q8NG06 486 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 EDEM3Q9BZQ6 932 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 TAB2Q9NYJ8 693 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 PARP2Q9UGN5 583 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 FSD2A1L4K1 749 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 KRT9P35527 623 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 INHBEP58166 350 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 NAALADL2Q58DX5 795 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 C9orf131Q5VYM1 1079 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 FAM173BQ6P4H8 233 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 ENOSF1Q7L5Y1 443 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms