RNA–Protein interactions for RNA: ENST00000235958.4

HMGCL-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

TSL 5

Gene HMGCL, Length 1,101 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-201ENST00000235958 Q9Y3F1 56 aa11.51□□□□□ -0.57
HMGCL-201ENST00000235958 ATP6V1DQ9Y5K8 247 aa11.51□□□□□ -0.57
HMGCL-201ENST00000235958 DOCK5Q9H7D0 1870 aa11.51□□□□□ -0.57
HMGCL-201ENST00000235958 TBX3O15119 743 aa11.5□□□□□ -0.57
HMGCL-201ENST00000235958 NKRFO15226 690 aaKnown RBP eCLIP11.5□□□□□ -0.57
HMGCL-201ENST00000235958 PSMD10O75832 226 aa11.5□□□□□ -0.57
HMGCL-201ENST00000235958 GGPS1O95749 300 aa11.5□□□□□ -0.57
HMGCL-201ENST00000235958 GH1P01241 217 aa11.5□□□□□ -0.57
HMGCL-201ENST00000235958 UBA1P22314 1058 aaKnown RBP11.5□□□□□ -0.57
HMGCL-201ENST00000235958 TXKP42681 527 aa11.5□□□□□ -0.57
HMGCL-201ENST00000235958 LAMC2Q13753 1193 aa11.5□□□□□ -0.57
HMGCL-201ENST00000235958 CALCRLQ16602 461 aa11.5□□□□□ -0.57
HMGCL-201ENST00000235958 ATL3Q6DD88 541 aa11.5□□□□□ -0.57
HMGCL-201ENST00000235958 TNS4Q8IZW8 715 aa11.5□□□□□ -0.57
HMGCL-201ENST00000235958 LENG1Q96BZ8 264 aaPredicted RBP11.5□□□□□ -0.57
HMGCL-201ENST00000235958 ZNF333Q96JL9 665 aa11.5□□□□□ -0.57
HMGCL-201ENST00000235958 RIT2Q99578 217 aa11.5□□□□□ -0.57
HMGCL-201ENST00000235958 SDF4Q9BRK5 362 aa11.5□□□□□ -0.57
HMGCL-201ENST00000235958 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.5□□□□□ -0.57
HMGCL-201ENST00000235958 AP5M1Q9H0R1 490 aa11.5□□□□□ -0.57
HMGCL-201ENST00000235958 MLXIPQ9HAP2 919 aa11.5□□□□□ -0.57
HMGCL-201ENST00000235958 DDX20Q9UHI6 824 aaKnown RBP11.5□□□□□ -0.57
HMGCL-201ENST00000235958 GAS7O60861 476 aa11.49□□□□□ -0.57
HMGCL-201ENST00000235958 RARBP10826 455 aa11.49□□□□□ -0.57
HMGCL-201ENST00000235958 IRX5P78411 483 aaPredicted RBP11.49□□□□□ -0.57
HMGCL-201ENST00000235958 ARHGAP1Q07960 439 aa11.49□□□□□ -0.57
HMGCL-201ENST00000235958 SLC39A14Q15043 492 aa11.49□□□□□ -0.57
HMGCL-201ENST00000235958 PTPAQ15257 358 aa11.49□□□□□ -0.57
HMGCL-201ENST00000235958 IL17AQ16552 155 aa11.49□□□□□ -0.57
HMGCL-201ENST00000235958 LRCH2Q5VUJ6 765 aa11.49□□□□□ -0.57
HMGCL-201ENST00000235958 SLFN12Q8IYM2 578 aa11.49□□□□□ -0.57
HMGCL-201ENST00000235958 AFG1LQ8WV93 481 aa11.49□□□□□ -0.57
HMGCL-201ENST00000235958 DEFB118Q96PH6 123 aa11.49□□□□□ -0.57
HMGCL-201ENST00000235958 TTC12Q9H892 705 aaPredicted RBP11.49□□□□□ -0.57
HMGCL-201ENST00000235958 PAK6Q9NQU5 681 aaPredicted RBP11.49□□□□□ -0.57
HMGCL-201ENST00000235958 POLR3EQ9NVU0 708 aa11.49□□□□□ -0.57
HMGCL-201ENST00000235958 RCOR1Q9UKL0 485 aa11.49□□□□□ -0.57
HMGCL-201ENST00000235958 CFAP45Q9UL16 551 aa11.49□□□□□ -0.57
HMGCL-201ENST00000235958 CEP131Q9UPN4 1083 aa11.49□□□□□ -0.57
HMGCL-201ENST00000235958 TELO2Q9Y4R8 837 aa11.49□□□□□ -0.57
HMGCL-201ENST00000235958 NFASCO94856 1347 aa11.49□□□□□ -0.57
HMGCL-201ENST00000235958 LRRC37A2A6NM11 1700 aa11.49□□□□□ -0.57
HMGCL-201ENST00000235958 DDX39AO00148 427 aaKnown RBP11.48□□□□□ -0.57
HMGCL-201ENST00000235958 LAD1O00515 517 aa11.48□□□□□ -0.57
HMGCL-201ENST00000235958 MSCO60682 206 aa11.48□□□□□ -0.57
HMGCL-201ENST00000235958 FARP2O94887 1054 aaPredicted RBP11.48□□□□□ -0.57
HMGCL-201ENST00000235958 BMP15O95972 392 aa11.48□□□□□ -0.57
HMGCL-201ENST00000235958 CCNE2O96020 404 aa11.48□□□□□ -0.57
HMGCL-201ENST00000235958 PGK1P00558 417 aa11.48□□□□□ -0.57
HMGCL-201ENST00000235958 OR52Z1P0C646 297 aa11.48□□□□□ -0.57
HMGCL-201ENST00000235958 TECP42680 631 aa11.48□□□□□ -0.57
HMGCL-201ENST00000235958 NASPP49321 788 aaPredicted RBP11.48□□□□□ -0.57
HMGCL-201ENST00000235958 GJA9P57773 515 aa11.48□□□□□ -0.57
HMGCL-201ENST00000235958 ATP2C1P98194 919 aaPredicted RBP11.48□□□□□ -0.57
HMGCL-201ENST00000235958 SP4Q02446 784 aa11.48□□□□□ -0.57
HMGCL-201ENST00000235958 HSDL1Q3SXM5 330 aa11.48□□□□□ -0.57
HMGCL-201ENST00000235958 METTL7BQ6UX53 244 aa11.48□□□□□ -0.57
HMGCL-201ENST00000235958 DTHD1Q6ZMT9 781 aa11.48□□□□□ -0.57
HMGCL-201ENST00000235958 TLK2Q86UE8 772 aa11.48□□□□□ -0.57
HMGCL-201ENST00000235958 LINC00301Q8NCQ3 95 aa11.48□□□□□ -0.57
HMGCL-201ENST00000235958 OR6J1Q8NGC5 347 aa11.48□□□□□ -0.57
HMGCL-201ENST00000235958 TNPO1Q92973 898 aaKnown RBP11.48□□□□□ -0.57
HMGCL-201ENST00000235958 EMID1Q96A84 441 aaPredicted RBP11.48□□□□□ -0.57
HMGCL-201ENST00000235958 SPATA33Q96N06 139 aa11.48□□□□□ -0.57
HMGCL-201ENST00000235958 XPNPEP3Q9NQH7 507 aa11.48□□□□□ -0.57
HMGCL-201ENST00000235958 SLC9A2Q9UBY0 812 aa11.48□□□□□ -0.57
HMGCL-201ENST00000235958 GSTTP1A0A1W2PQM5 241 aa11.47□□□□□ -0.57
HMGCL-201ENST00000235958 A6NJR5 290 aa11.47□□□□□ -0.57
HMGCL-201ENST00000235958 CTAGE5O15320 804 aa11.47□□□□□ -0.57
HMGCL-201ENST00000235958 PPFIA4O75335 1185 aa11.47□□□□□ -0.57
HMGCL-201ENST00000235958 SGPL1O95470 568 aa11.47□□□□□ -0.57
HMGCL-201ENST00000235958 TFRCP02786 760 aaKnown RBP11.47□□□□□ -0.57
HMGCL-201ENST00000235958 GJB1P08034 283 aa11.47□□□□□ -0.57
HMGCL-201ENST00000235958 C6orf222P0C671 652 aaPredicted RBP11.47□□□□□ -0.57
HMGCL-201ENST00000235958 NCLP19338 710 aaKnown RBP11.47□□□□□ -0.57
HMGCL-201ENST00000235958 MARCKSP29966 332 aaPredicted RBP11.47□□□□□ -0.57
HMGCL-201ENST00000235958 PRPHP41219 470 aa11.47□□□□□ -0.57
HMGCL-201ENST00000235958 ACTR2P61160 394 aa11.47□□□□□ -0.57
HMGCL-201ENST00000235958 KRT85P78386 507 aa11.47□□□□□ -0.57
HMGCL-201ENST00000235958 BEX3Q00994 111 aa11.47□□□□□ -0.57
HMGCL-201ENST00000235958 PPP2R5CQ13362 524 aa11.47□□□□□ -0.57
HMGCL-201ENST00000235958 PDIA5Q14554 519 aa11.47□□□□□ -0.57
HMGCL-201ENST00000235958 STK38Q15208 465 aa11.47□□□□□ -0.57
HMGCL-201ENST00000235958 GNASQ5JWF2 1037 aa11.47□□□□□ -0.57
HMGCL-201ENST00000235958 ARL6IP4Q66PJ3 421 aaKnown RBP11.47□□□□□ -0.57
HMGCL-201ENST00000235958 B3GNT9Q6UX72 402 aa11.47□□□□□ -0.57
HMGCL-201ENST00000235958 ARRDC4Q8NCT1 418 aa11.47□□□□□ -0.57
HMGCL-201ENST00000235958 SEPT1Q8WYJ6 367 aa11.47□□□□□ -0.57
HMGCL-201ENST00000235958 GPR20Q99678 358 aa11.47□□□□□ -0.57
HMGCL-201ENST00000235958 TEKT3Q9BXF9 490 aa11.47□□□□□ -0.57
HMGCL-201ENST00000235958 UPF3AQ9H1J1 476 aaKnown RBP11.47□□□□□ -0.57
HMGCL-201ENST00000235958 UNC45AQ9H3U1 944 aa11.47□□□□□ -0.57
HMGCL-201ENST00000235958 SPC25Q9HBM1 224 aa11.47□□□□□ -0.57
HMGCL-201ENST00000235958 JPH1Q9HDC5 661 aaPredicted RBP11.47□□□□□ -0.57
HMGCL-201ENST00000235958 VAV3Q9UKW4 847 aa11.47□□□□□ -0.57
HMGCL-201ENST00000235958 MYH15Q9Y2K3 1946 aa11.47□□□□□ -0.57
HMGCL-201ENST00000235958 SYNRGQ9UMZ2 1314 aa11.46□□□□□ -0.57
HMGCL-201ENST00000235958 EML1O00423 815 aa11.46□□□□□ -0.57
HMGCL-201ENST00000235958 NOP56O00567 594 aaKnown RBP11.46□□□□□ -0.57
HMGCL-201ENST00000235958 SPTLC2O15270 562 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 85.4 ms