RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 RAP1GDS1P52306 607 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 STAT2P52630 851 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 DSG1Q02413 1049 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 TMEM132AQ24JP5 1023 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 ZNF658Q5TYW1 1059 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-220ENST00000641603 TYW1BQ6NUM6 668 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 LRRC31Q6UY01 552 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 RSRC2Q7L4I2 434 aaKnown RBP5.05□□□□□ -1.6
SCN1A-220ENST00000641603 RRAGAQ7L523 313 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 WDR75Q8IWA0 830 aaKnown RBP5.05□□□□□ -1.6
SCN1A-220ENST00000641603 ZNF444Q8N0Y2 327 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-220ENST00000641603 CNBD2Q96M20 576 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 CCDC8Q9H0W5 538 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-220ENST00000641603 EPS8L2Q9H6S3 715 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 MKNK2Q9HBH9 465 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 GOLGA8MH3BSY2 632 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 GSPT1P15170 499 aaKnown RBP5.05□□□□□ -1.6
SCN1A-220ENST00000641603 Q4G0T1 1027 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 RSBN1LQ6PCB5 846 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-220ENST00000641603 WAPLQ7Z5K2 1190 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 SIKE1Q9BRV8 207 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 ABHD10Q9NUJ1 306 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 TNKSO95271 1327 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 KRT6AP02538 564 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 KRT6BP04259 564 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 COPS2P61201 443 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 STAT4Q14765 748 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 CXorf38Q8TB03 319 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 SEC16BQ96JE7 1060 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 PITPNM3Q9BZ71 974 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 MCM9Q9NXL9 1143 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 TRAF3IP3Q9Y228 551 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 WDR37Q9Y2I8 494 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 GMEB1Q9Y692 573 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 EDC4Q6P2E9 1401 aaKnown RBP5.04□□□□□ -1.6
SCN1A-220ENST00000641603 TSPY2A6NKD2 308 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 RAD21O60216 631 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 TSPY3P0CV98 308 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 TSPY8P0CW00 308 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 TSPY1Q01534 308 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 RCN2Q14257 317 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 BEND6Q5SZJ8 279 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-220ENST00000641603 FBXW10Q5XX13 1052 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 EGFL6Q8IUX8 553 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 GIPC2Q8TF65 315 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 SH3GL2Q99962 352 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 ATAD3AQ9NVI7 634 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 SNX5Q9Y5X3 404 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 ARHGEF5Q12774 1597 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 RAPGEF6Q8TEU7 1601 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 FKBP6O75344 327 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 CCDC159P0C7I6 412 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 PCGF5Q86SE9 256 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 ANKRD42Q8N9B4 389 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 UNC45AQ9H3U1 944 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 TIMMDC1Q9NPL8 285 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 PCDHA5Q9Y5H7 936 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 EEF2P13639 858 aaKnown RBP5.04□□□□□ -1.6
SCN1A-220ENST00000641603 BNC1Q01954 994 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 THAP11Q96EK4 314 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 NR1H4Q96RI1 486 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-220ENST00000641603 CAAP1Q9H8G2 361 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 ABCB11O95342 1321 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 CDHR2Q9BYE9 1310 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 FAM200BP0CF97 657 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 CCDC166P0CW27 439 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 XRCC5P13010 732 aaKnown RBP5.04□□□□□ -1.6
SCN1A-220ENST00000641603 STX1BP61266 288 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 GRM1Q13255 1194 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 WDR44Q5JSH3 913 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 ATAD3BQ5T9A4 648 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 KCNK16Q96T55 309 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 ANKIB1Q9P2G1 1089 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 VWA3AA6NCI4 1184 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 F6X3S4 739 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 CHL1O00533 1208 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 RANBP6O60518 1105 aaKnown RBP5.04□□□□□ -1.6
SCN1A-220ENST00000641603 TNFRSF8P28908 595 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 ACADVLP49748 655 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 CABP4P57796 275 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 KHDRBS1Q07666 443 aaKnown RBP eCLIP5.04□□□□□ -1.6
SCN1A-220ENST00000641603 CCNI2Q6ZMN8 369 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-220ENST00000641603 MYOCDQ8IZQ8 938 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 CENPTQ96BT3 561 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 ATXN10Q9UBB4 475 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 TRPM2O94759 1503 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 KLHL33A6NCF5 533 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 GIPC1O14908 333 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 SKIV2L2P42285 1042 aaKnown RBP5.04□□□□□ -1.6
SCN1A-220ENST00000641603 KRT6CP48668 564 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 NDUFA8P51970 172 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 ALCAMQ13740 583 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 RESP18Q5W5W9 173 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 MYCBPAPQ8TBZ2 947 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 PPP2R3CQ969Q6 453 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 ELAC2Q9BQ52 826 aaKnown RBP5.04□□□□□ -1.6
SCN1A-220ENST00000641603 ARMCX3Q9UH62 379 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-220ENST00000641603 ZNF518AQ6AHZ1 1483 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 INHBAP08476 426 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 NQO1P15559 274 aaKnown RBP5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms