RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 LENG1Q96BZ8 264 aaPredicted RBP20.91■□□□□ 0.94
CLN3-259ENST00000637551 TOX2Q96NM4 488 aa20.91■□□□□ 0.94
CLN3-259ENST00000637551 SPATA31C2B4DYI2 1134 aa20.9■□□□□ 0.94
CLN3-259ENST00000637551 DYNC1LI2O43237 492 aaPredicted RBP20.9■□□□□ 0.94
CLN3-259ENST00000637551 CYP3A4P08684 503 aa20.9■□□□□ 0.94
CLN3-259ENST00000637551 MYCLP12524 364 aaPredicted RBP20.9■□□□□ 0.94
CLN3-259ENST00000637551 STK3Q13188 491 aa20.9■□□□□ 0.94
CLN3-259ENST00000637551 NEDD9Q14511 834 aa20.9■□□□□ 0.94
CLN3-259ENST00000637551 SEPT14Q6ZU15 432 aa20.9■□□□□ 0.94
CLN3-259ENST00000637551 PPTC7Q8NI37 304 aa20.9■□□□□ 0.94
CLN3-259ENST00000637551 CRYGNQ8WXF5 182 aa20.9■□□□□ 0.94
CLN3-259ENST00000637551 ANO3Q9BYT9 981 aa20.9■□□□□ 0.94
CLN3-259ENST00000637551 SENP6Q9GZR1 1112 aaPredicted RBP20.9■□□□□ 0.94
CLN3-259ENST00000637551 MYH7BA7E2Y1 1941 aa20.89■□□□□ 0.93
CLN3-259ENST00000637551 EVI5O60447 810 aa20.89■□□□□ 0.93
CLN3-259ENST00000637551 ASGR1P07306 291 aa20.89■□□□□ 0.93
CLN3-259ENST00000637551 UBE2SQ16763 222 aa20.89■□□□□ 0.93
CLN3-259ENST00000637551 SLC39A5Q6ZMH5 540 aa20.89■□□□□ 0.93
CLN3-259ENST00000637551 ANKRD33Q7Z3H0 272 aa20.89■□□□□ 0.93
CLN3-259ENST00000637551 OR6J1Q8NGC5 347 aa20.89■□□□□ 0.93
CLN3-259ENST00000637551 STARD7Q9NQZ5 370 aa20.89■□□□□ 0.93
CLN3-259ENST00000637551 UBIAD1Q9Y5Z9 338 aa20.89■□□□□ 0.93
CLN3-259ENST00000637551 DDX49Q9Y6V7 483 aaKnown RBP20.89■□□□□ 0.93
CLN3-259ENST00000637551 DNAH12Q6ZR08 3092 aa20.88■□□□□ 0.93
CLN3-259ENST00000637551 A0A0U1RQG5 324 aaPredicted RBP20.88■□□□□ 0.93
CLN3-259ENST00000637551 ARIH2O95376 493 aa20.88■□□□□ 0.93
CLN3-259ENST00000637551 ARHGAP1Q07960 439 aa20.88■□□□□ 0.93
CLN3-259ENST00000637551 PCDHA4Q9UN74 947 aa20.88■□□□□ 0.93
CLN3-259ENST00000637551 MYADML2A6NDP7 307 aa20.87■□□□□ 0.93
CLN3-259ENST00000637551 CTDNEP1O95476 244 aa20.87■□□□□ 0.93
CLN3-259ENST00000637551 HMGN5P82970 282 aaKnown RBP20.87■□□□□ 0.93
CLN3-259ENST00000637551 CELF3Q5SZQ8 465 aaKnown RBP20.87■□□□□ 0.93
CLN3-259ENST00000637551 MYSM1Q5VVJ2 828 aa20.87■□□□□ 0.93
CLN3-259ENST00000637551 METTL7BQ6UX53 244 aa20.87■□□□□ 0.93
CLN3-259ENST00000637551 SLC43A3Q8NBI5 491 aa20.87■□□□□ 0.93
CLN3-259ENST00000637551 NSUN7Q8NE18 718 aaKnown RBP20.87■□□□□ 0.93
CLN3-259ENST00000637551 ORC3Q9UBD5 711 aaPredicted RBP20.87■□□□□ 0.93
CLN3-259ENST00000637551 STXBP5LQ9Y2K9 1186 aa20.87■□□□□ 0.93
CLN3-259ENST00000637551 PPFIA4O75335 1185 aa20.86■□□□□ 0.93
CLN3-259ENST00000637551 UBA1P22314 1058 aaKnown RBP20.86■□□□□ 0.93
CLN3-259ENST00000637551 NLRP5P59047 1200 aa20.86■□□□□ 0.93
CLN3-259ENST00000637551 ARHGAP4P98171 946 aa20.86■□□□□ 0.93
CLN3-259ENST00000637551 PURAQ00577 322 aaKnown RBP20.86■□□□□ 0.93
CLN3-259ENST00000637551 SETQ01105 290 aaPredicted RBP20.86■□□□□ 0.93
CLN3-259ENST00000637551 DGKDQ16760 1214 aa20.86■□□□□ 0.93
CLN3-259ENST00000637551 LRRC26Q2I0M4 334 aa20.86■□□□□ 0.93
CLN3-259ENST00000637551 CEP55Q53EZ4 464 aa20.86■□□□□ 0.93
CLN3-259ENST00000637551 DHX37Q8IY37 1157 aaKnown RBP20.86■□□□□ 0.93
CLN3-259ENST00000637551 DEFB123Q8N688 67 aa20.86■□□□□ 0.93
CLN3-259ENST00000637551 LARP6Q9BRS8 491 aaKnown RBP20.86■□□□□ 0.93
CLN3-259ENST00000637551 PHF20Q9BVI0 1012 aa20.86■□□□□ 0.93
CLN3-259ENST00000637551 JADE2Q9NQC1 790 aa20.86■□□□□ 0.93
CLN3-259ENST00000637551 VPS54Q9P1Q0 977 aa20.86■□□□□ 0.93
CLN3-259ENST00000637551 M0R2N6 131 aa20.85■□□□□ 0.93
CLN3-259ENST00000637551 LARGE1O95461 756 aa20.85■□□□□ 0.93
CLN3-259ENST00000637551 MMP3P08254 477 aa20.85■□□□□ 0.93
CLN3-259ENST00000637551 CIITAP33076 1130 aa20.85■□□□□ 0.93
CLN3-259ENST00000637551 BMP8BP34820 402 aa20.85■□□□□ 0.93
CLN3-259ENST00000637551 CDK7P50613 346 aa20.85■□□□□ 0.93
CLN3-259ENST00000637551 USP11P51784 963 aa20.85■□□□□ 0.93
CLN3-259ENST00000637551 PTPN11Q06124 597 aaPredicted RBP20.85■□□□□ 0.93
CLN3-259ENST00000637551 MTMR1Q13613 665 aa20.85■□□□□ 0.93
CLN3-259ENST00000637551 LY6KQ17RY6 165 aa20.85■□□□□ 0.93
CLN3-259ENST00000637551 MOXD1Q6UVY6 613 aa20.85■□□□□ 0.93
CLN3-259ENST00000637551 MXRA8Q9BRK3 442 aa20.85■□□□□ 0.93
CLN3-259ENST00000637551 MTG1Q9BT17 334 aaPredicted RBP20.85■□□□□ 0.93
CLN3-259ENST00000637551 KATNAL1Q9BW62 490 aa20.85■□□□□ 0.93
CLN3-259ENST00000637551 COL25A1Q9BXS0 654 aaPredicted RBP20.85■□□□□ 0.93
CLN3-259ENST00000637551 NFASCO94856 1347 aa20.84■□□□□ 0.93
CLN3-259ENST00000637551 ARVCFO00192 962 aa20.84■□□□□ 0.93
CLN3-259ENST00000637551 MEIS1O00470 390 aa20.84■□□□□ 0.93
CLN3-259ENST00000637551 ITGB5P18084 799 aa20.84■□□□□ 0.93
CLN3-259ENST00000637551 RTP1P59025 263 aa20.84■□□□□ 0.93
CLN3-259ENST00000637551 NFRKBQ6P4R8 1299 aa20.84■□□□□ 0.93
CLN3-259ENST00000637551 BLIDQ8IZY5 108 aa20.84■□□□□ 0.93
CLN3-259ENST00000637551 GDF15Q99988 308 aa20.84■□□□□ 0.93
CLN3-259ENST00000637551 KIF3AQ9Y496 699 aa20.84■□□□□ 0.93
CLN3-259ENST00000637551 GGPS1O95749 300 aa20.83■□□□□ 0.93
CLN3-259ENST00000637551 MYCNP04198 464 aaPredicted RBP20.83■□□□□ 0.93
CLN3-259ENST00000637551 BEX3Q00994 111 aa20.83■□□□□ 0.93
CLN3-259ENST00000637551 SEMA3FQ13275 785 aa20.83■□□□□ 0.93
CLN3-259ENST00000637551 NPY5RQ15761 445 aa20.83■□□□□ 0.93
CLN3-259ENST00000637551 Q7L0L9 218 aa20.83■□□□□ 0.93
CLN3-259ENST00000637551 KRT25Q7Z3Z0 450 aa20.83■□□□□ 0.93
CLN3-259ENST00000637551 SESTD1Q86VW0 696 aa20.83■□□□□ 0.93
CLN3-259ENST00000637551 BRMS1Q9HCU9 246 aa20.83■□□□□ 0.93
CLN3-259ENST00000637551 F2P00734 622 aa20.82■□□□□ 0.92
CLN3-259ENST00000637551 FDPSP14324 419 aaKnown RBP20.82■□□□□ 0.92
CLN3-259ENST00000637551 KCNA2P16389 499 aa20.82■□□□□ 0.92
CLN3-259ENST00000637551 TMEM63BQ5T3F8 832 aa20.82■□□□□ 0.92
CLN3-259ENST00000637551 CXCL17Q6UXB2 119 aa20.82■□□□□ 0.92
CLN3-259ENST00000637551 NECAB1Q8N987 351 aa20.82■□□□□ 0.92
CLN3-259ENST00000637551 AFG1LQ8WV93 481 aa20.82■□□□□ 0.92
CLN3-259ENST00000637551 NAP1L4Q99733 375 aaKnown RBP20.82■□□□□ 0.92
CLN3-259ENST00000637551 ALG1Q9BT22 464 aa20.82■□□□□ 0.92
CLN3-259ENST00000637551 MLXIPQ9HAP2 919 aa20.82■□□□□ 0.92
CLN3-259ENST00000637551 KCNH7Q9NS40 1196 aa20.82■□□□□ 0.92
CLN3-259ENST00000637551 DCDC2CA8MYV0 355 aa20.81■□□□□ 0.92
CLN3-259ENST00000637551 SP2Q02086 613 aa20.81■□□□□ 0.92
CLN3-259ENST00000637551 ST3GAL1Q11201 340 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms