RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 SAMD1Q6SPF0 538 aaPredicted RBP11.87□□□□□ -0.51
CLN3-248ENST00000636355 GADL1Q6ZQY3 521 aa11.87□□□□□ -0.51
CLN3-248ENST00000636355 C11orf57Q6ZUT1 292 aaPredicted RBP11.87□□□□□ -0.51
CLN3-248ENST00000636355 PLA2G4DQ86XP0 818 aa11.87□□□□□ -0.51
CLN3-248ENST00000636355 C2orf69Q8N8R5 385 aa11.87□□□□□ -0.51
CLN3-248ENST00000636355 NSUN6Q8TEA1 469 aaKnown RBP11.87□□□□□ -0.51
CLN3-248ENST00000636355 LARP4BQ92615 738 aaKnown RBP11.87□□□□□ -0.51
CLN3-248ENST00000636355 GPRASP2Q96D09 838 aa11.87□□□□□ -0.51
CLN3-248ENST00000636355 CDHR1Q96JP9 859 aa11.87□□□□□ -0.51
CLN3-248ENST00000636355 MXRA8Q9BRK3 442 aa11.87□□□□□ -0.51
CLN3-248ENST00000636355 PDCD2LQ9BRP1 358 aa11.87□□□□□ -0.51
CLN3-248ENST00000636355 POLR3CQ9BUI4 534 aaPredicted RBP11.87□□□□□ -0.51
CLN3-248ENST00000636355 ASCC2Q9H1I8 757 aaPredicted RBP11.87□□□□□ -0.51
CLN3-248ENST00000636355 PXMP2Q9NR77 195 aa11.87□□□□□ -0.51
CLN3-248ENST00000636355 MAN1B1Q9UKM7 699 aa11.87□□□□□ -0.51
CLN3-248ENST00000636355 VAV3Q9UKW4 847 aa11.87□□□□□ -0.51
CLN3-248ENST00000636355 UBIAD1Q9Y5Z9 338 aa11.87□□□□□ -0.51
CLN3-248ENST00000636355 PLXNB2O15031 1838 aa11.87□□□□□ -0.51
CLN3-248ENST00000636355 PP2D1A8MPX8 630 aa11.86□□□□□ -0.51
CLN3-248ENST00000636355 PRR29P0C7W0 189 aa11.86□□□□□ -0.51
CLN3-248ENST00000636355 TAL1P17542 331 aaPredicted RBP11.86□□□□□ -0.51
CLN3-248ENST00000636355 CCND2P30279 289 aa11.86□□□□□ -0.51
CLN3-248ENST00000636355 PGM5Q15124 567 aa11.86□□□□□ -0.51
CLN3-248ENST00000636355 COBLL1Q53SF7 1204 aa11.86□□□□□ -0.51
CLN3-248ENST00000636355 LRCH2Q5VUJ6 765 aa11.86□□□□□ -0.51
CLN3-248ENST00000636355 MAP1SQ66K74 1059 aaPredicted RBP11.86□□□□□ -0.51
CLN3-248ENST00000636355 SLC30A10Q6XR72 485 aa11.86□□□□□ -0.51
CLN3-248ENST00000636355 SHCBP1Q8NEM2 672 aa11.86□□□□□ -0.51
CLN3-248ENST00000636355 RDM1Q8NG50 284 aa11.86□□□□□ -0.51
CLN3-248ENST00000636355 CNKSR2Q8WXI2 1034 aa11.86□□□□□ -0.51
CLN3-248ENST00000636355 RAD54LQ92698 747 aa11.86□□□□□ -0.51
CLN3-248ENST00000636355 SLC10A4Q96EP9 437 aa11.86□□□□□ -0.51
CLN3-248ENST00000636355 WNK4Q96J92 1243 aa11.86□□□□□ -0.51
CLN3-248ENST00000636355 IWS1Q96ST2 819 aa11.86□□□□□ -0.51
CLN3-248ENST00000636355 RMDN3Q96TC7 470 aa11.86□□□□□ -0.51
CLN3-248ENST00000636355 MPHOSPH6Q99547 160 aaKnown RBP11.86□□□□□ -0.51
CLN3-248ENST00000636355 C7orf25Q9BPX7 421 aa11.86□□□□□ -0.51
CLN3-248ENST00000636355 PANK2Q9BZ23 570 aa11.86□□□□□ -0.51
CLN3-248ENST00000636355 SPATC1LQ9H0A9 340 aa11.86□□□□□ -0.51
CLN3-248ENST00000636355 TUFT1Q9NNX1 390 aa11.86□□□□□ -0.51
CLN3-248ENST00000636355 ZCCHC17Q9NP64 241 aaKnown RBP11.86□□□□□ -0.51
CLN3-248ENST00000636355 HOMER2Q9NSB8 354 aa11.86□□□□□ -0.51
CLN3-248ENST00000636355 TBC1D22BQ9NU19 505 aa11.86□□□□□ -0.51
CLN3-248ENST00000636355 CYP39A1Q9NYL5 469 aa11.86□□□□□ -0.51
CLN3-248ENST00000636355 COL20A1Q9P218 1284 aa11.86□□□□□ -0.51
CLN3-248ENST00000636355 PVALEFA0A1B0GWK0 134 aa11.85□□□□□ -0.51
CLN3-248ENST00000636355 B4DLN1 442 aa11.85□□□□□ -0.51
CLN3-248ENST00000636355 IPO5O00410 1097 aaKnown RBP11.85□□□□□ -0.51
CLN3-248ENST00000636355 GAS7O60861 476 aa11.85□□□□□ -0.51
CLN3-248ENST00000636355 TOMM70O94826 608 aa11.85□□□□□ -0.51
CLN3-248ENST00000636355 RHOBTB3O94955 611 aa11.85□□□□□ -0.51
CLN3-248ENST00000636355 POTEIP0CG38 1075 aa11.85□□□□□ -0.51
CLN3-248ENST00000636355 POTEJP0CG39 1038 aa11.85□□□□□ -0.51
CLN3-248ENST00000636355 CCT6AP40227 531 aaKnown RBP11.85□□□□□ -0.51
CLN3-248ENST00000636355 AFMP43652 599 aa11.85□□□□□ -0.51
CLN3-248ENST00000636355 HS1BP3Q53T59 392 aa11.85□□□□□ -0.51
CLN3-248ENST00000636355 ZNF658Q5TYW1 1059 aaPredicted RBP11.85□□□□□ -0.51
CLN3-248ENST00000636355 FOXR2Q6PJQ5 311 aa11.85□□□□□ -0.51
CLN3-248ENST00000636355 B3GNT9Q6UX72 402 aa11.85□□□□□ -0.51
CLN3-248ENST00000636355 NSMFQ6X4W1 530 aa11.85□□□□□ -0.51
CLN3-248ENST00000636355 SV2BQ7L1I2 683 aa11.85□□□□□ -0.51
CLN3-248ENST00000636355 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.85□□□□□ -0.51
CLN3-248ENST00000636355 ANKRD23Q86SG2 305 aa11.85□□□□□ -0.51
CLN3-248ENST00000636355 LUZP1Q86V48 1076 aa11.85□□□□□ -0.51
CLN3-248ENST00000636355 DHX40Q8IX18 779 aaKnown RBP11.85□□□□□ -0.51
CLN3-248ENST00000636355 TBC1D5Q92609 795 aa11.85□□□□□ -0.51
CLN3-248ENST00000636355 INPP4AQ96PE3 977 aaPredicted RBP11.85□□□□□ -0.51
CLN3-248ENST00000636355 MTRQ99707 1265 aa11.85□□□□□ -0.51
CLN3-248ENST00000636355 TEKT3Q9BXF9 490 aa11.85□□□□□ -0.51
CLN3-248ENST00000636355 TRIM9Q9C026 710 aa11.85□□□□□ -0.51
CLN3-248ENST00000636355 A1CFQ9NQ94 594 aaKnown RBP11.85□□□□□ -0.51
CLN3-248ENST00000636355 JADE2Q9NQC1 790 aa11.85□□□□□ -0.51
CLN3-248ENST00000636355 BLOC1S4Q9NUP1 217 aa11.85□□□□□ -0.51
CLN3-248ENST00000636355 TCEAL9Q9UHQ7 104 aa11.85□□□□□ -0.51
CLN3-248ENST00000636355 ARID2Q68CP9 1835 aa11.85□□□□□ -0.51
CLN3-248ENST00000636355 PLXNA1Q9UIW2 1896 aa11.85□□□□□ -0.51
CLN3-248ENST00000636355 BIN1O00499 593 aa11.84□□□□□ -0.51
CLN3-248ENST00000636355 FOXN1O15353 648 aa11.84□□□□□ -0.51
CLN3-248ENST00000636355 RPN1P04843 607 aaKnown RBP11.84□□□□□ -0.51
CLN3-248ENST00000636355 CDC25AP30304 524 aa11.84□□□□□ -0.51
CLN3-248ENST00000636355 CDC25BP30305 580 aa11.84□□□□□ -0.51
CLN3-248ENST00000636355 GCLCP48506 637 aaPredicted RBP11.84□□□□□ -0.51
CLN3-248ENST00000636355 STIM1Q13586 685 aa11.84□□□□□ -0.51
CLN3-248ENST00000636355 MTMR1Q13613 665 aa11.84□□□□□ -0.51
CLN3-248ENST00000636355 GNPTABQ3T906 1256 aa11.84□□□□□ -0.51
CLN3-248ENST00000636355 ARHGEF16Q5VV41 709 aa11.84□□□□□ -0.51
CLN3-248ENST00000636355 CHADLQ6NUI6 762 aa11.84□□□□□ -0.51
CLN3-248ENST00000636355 DLK2Q6UY11 383 aa11.84□□□□□ -0.51
CLN3-248ENST00000636355 MOB2Q70IA6 237 aa11.84□□□□□ -0.51
CLN3-248ENST00000636355 NLRX1Q86UT6 975 aa11.84□□□□□ -0.51
CLN3-248ENST00000636355 AOPEPQ8N6M6 819 aa11.84□□□□□ -0.51
CLN3-248ENST00000636355 PNMA5Q96PV4 448 aa11.84□□□□□ -0.51
CLN3-248ENST00000636355 ZNF577Q9BSK1 485 aa11.84□□□□□ -0.51
CLN3-248ENST00000636355 MROH8Q9H579 483 aa11.84□□□□□ -0.51
CLN3-248ENST00000636355 RRAGCQ9HB90 399 aa11.84□□□□□ -0.51
CLN3-248ENST00000636355 KCNH7Q9NS40 1196 aa11.84□□□□□ -0.51
CLN3-248ENST00000636355 KCND2Q9NZV8 630 aa11.84□□□□□ -0.51
CLN3-248ENST00000636355 ADD3Q9UEY8 706 aaKnown RBP11.84□□□□□ -0.51
CLN3-248ENST00000636355 RIPK3Q9Y572 518 aa11.84□□□□□ -0.51
CLN3-248ENST00000636355 TRAF5O00463 557 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms