RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 CD99L2Q8TCZ2 262 aa23.29■■□□□ 1.32
CLN3-245ENST00000636172 GJA10Q969M2 543 aa23.29■■□□□ 1.32
CLN3-245ENST00000636172 FERMT2Q96AC1 680 aa23.29■■□□□ 1.32
CLN3-245ENST00000636172 UIMC1Q96RL1 719 aa23.29■■□□□ 1.32
CLN3-245ENST00000636172 KCNH7Q9NS40 1196 aa23.29■■□□□ 1.32
CLN3-245ENST00000636172 TSKSQ9UJT2 592 aa23.29■■□□□ 1.32
CLN3-245ENST00000636172 TBX3O15119 743 aa23.28■■□□□ 1.32
CLN3-245ENST00000636172 GADD45BO75293 160 aaPredicted RBP23.28■■□□□ 1.32
CLN3-245ENST00000636172 MTMR1Q13613 665 aa23.28■■□□□ 1.32
CLN3-245ENST00000636172 ARMCX2Q7L311 632 aa23.28■■□□□ 1.32
CLN3-245ENST00000636172 GPRASP2Q96D09 838 aa23.28■■□□□ 1.32
CLN3-245ENST00000636172 CLIC6Q96NY7 704 aa23.28■■□□□ 1.32
CLN3-245ENST00000636172 APBA2Q99767 749 aa23.28■■□□□ 1.32
CLN3-245ENST00000636172 FKTNO75072 461 aa23.28■■□□□ 1.32
CLN3-245ENST00000636172 CYP2B6P20813 491 aa23.28■■□□□ 1.32
CLN3-245ENST00000636172 ZNF296Q8WUU4 475 aaPredicted RBP23.28■■□□□ 1.32
CLN3-245ENST00000636172 GABRQQ9UN88 632 aa23.28■■□□□ 1.32
CLN3-245ENST00000636172 VWA3AA6NCI4 1184 aa23.27■■□□□ 1.32
CLN3-245ENST00000636172 DDX11L8A8MPP1 907 aa23.27■■□□□ 1.32
CLN3-245ENST00000636172 CUTAO60888 179 aa23.27■■□□□ 1.32
CLN3-245ENST00000636172 TXKP42681 527 aa23.27■■□□□ 1.32
CLN3-245ENST00000636172 SEMA3FQ13275 785 aa23.27■■□□□ 1.32
CLN3-245ENST00000636172 NFKBIBQ15653 356 aa23.27■■□□□ 1.32
CLN3-245ENST00000636172 GNPTABQ3T906 1256 aa23.27■■□□□ 1.32
CLN3-245ENST00000636172 DTHD1Q6ZMT9 781 aa23.27■■□□□ 1.32
CLN3-245ENST00000636172 NLRX1Q86UT6 975 aa23.27■■□□□ 1.32
CLN3-245ENST00000636172 SLFN12Q8IYM2 578 aa23.27■■□□□ 1.32
CLN3-245ENST00000636172 SLC5A5Q92911 643 aa23.27■■□□□ 1.32
CLN3-245ENST00000636172 FAM20AQ96MK3 541 aa23.27■■□□□ 1.32
CLN3-245ENST00000636172 AGO4Q9HCK5 861 aaKnown RBP23.27■■□□□ 1.32
CLN3-245ENST00000636172 FLRT1Q9NZU1 646 aa23.27■■□□□ 1.32
CLN3-245ENST00000636172 MARCH6O60337 910 aa23.26■■□□□ 1.31
CLN3-245ENST00000636172 PRKCZQ05513 592 aa23.26■■□□□ 1.31
CLN3-245ENST00000636172 CCL14Q16627 93 aa23.26■■□□□ 1.31
CLN3-245ENST00000636172 EEPD1Q7L9B9 569 aa23.26■■□□□ 1.31
CLN3-245ENST00000636172 MSL3Q8N5Y2 521 aaKnown RBP23.26■■□□□ 1.31
CLN3-245ENST00000636172 TINF2Q9BSI4 451 aa23.26■■□□□ 1.31
CLN3-245ENST00000636172 ZNF577Q9BSK1 485 aa23.26■■□□□ 1.31
CLN3-245ENST00000636172 CASP8AP2Q9UKL3 1982 aa23.26■■□□□ 1.31
CLN3-245ENST00000636172 SPATA31C2B4DYI2 1134 aa23.25■■□□□ 1.31
CLN3-245ENST00000636172 IPO5O00410 1097 aaKnown RBP23.25■■□□□ 1.31
CLN3-245ENST00000636172 FLT3LGP49771 235 aa23.25■■□□□ 1.31
CLN3-245ENST00000636172 TPRNQ4KMQ1 711 aa23.25■■□□□ 1.31
CLN3-245ENST00000636172 ADALQ6DHV7 355 aa23.25■■□□□ 1.31
CLN3-245ENST00000636172 SEPT14Q6ZU15 432 aa23.25■■□□□ 1.31
CLN3-245ENST00000636172 FBXO16Q8IX29 292 aaPredicted RBP23.25■■□□□ 1.31
CLN3-245ENST00000636172 ERO1AQ96HE7 468 aa23.25■■□□□ 1.31
CLN3-245ENST00000636172 CSRNP2Q9H175 543 aa23.25■■□□□ 1.31
CLN3-245ENST00000636172 TTC12Q9H892 705 aaPredicted RBP23.25■■□□□ 1.31
CLN3-245ENST00000636172 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.25■■□□□ 1.31
CLN3-245ENST00000636172 SYNGAP1Q96PV0 1343 aa23.25■■□□□ 1.31
CLN3-245ENST00000636172 MAFGO15525 162 aa23.24■■□□□ 1.31
CLN3-245ENST00000636172 SNAI1O95863 264 aaPredicted RBP23.24■■□□□ 1.31
CLN3-245ENST00000636172 IGHA2P01877 340 aa23.24■■□□□ 1.31
CLN3-245ENST00000636172 XRCC5P13010 732 aaKnown RBP23.24■■□□□ 1.31
CLN3-245ENST00000636172 ICAM3P32942 547 aa23.24■■□□□ 1.31
CLN3-245ENST00000636172 FXR2P51116 673 aaKnown RBP eCLIP23.24■■□□□ 1.31
CLN3-245ENST00000636172 UBE2HP62256 183 aa23.24■■□□□ 1.31
CLN3-245ENST00000636172 ITGB3BPQ13352 177 aaPredicted RBP23.24■■□□□ 1.31
CLN3-245ENST00000636172 ZNF579Q8NAF0 562 aaKnown RBP23.24■■□□□ 1.31
CLN3-245ENST00000636172 CDHR1Q96JP9 859 aa23.24■■□□□ 1.31
CLN3-245ENST00000636172 PKD2L1Q9P0L9 805 aa23.24■■□□□ 1.31
CLN3-245ENST00000636172 GOLGA6L4A6NEF3 574 aa23.23■■□□□ 1.31
CLN3-245ENST00000636172 PSMD10O75832 226 aa23.23■■□□□ 1.31
CLN3-245ENST00000636172 TECP42680 631 aa23.23■■□□□ 1.31
CLN3-245ENST00000636172 OLFML2BQ68BL8 750 aa23.23■■□□□ 1.31
CLN3-245ENST00000636172 SHC4Q6S5L8 630 aa23.23■■□□□ 1.31
CLN3-245ENST00000636172 KATNBL1Q9H079 304 aa23.23■■□□□ 1.31
CLN3-245ENST00000636172 SRRDQ9UH36 339 aa23.23■■□□□ 1.31
CLN3-245ENST00000636172 VAV3Q9UKW4 847 aa23.23■■□□□ 1.31
CLN3-245ENST00000636172 PCDHA12Q9UN75 941 aa23.23■■□□□ 1.31
CLN3-245ENST00000636172 A0A1W2PQ27 194 aa23.23■■□□□ 1.31
CLN3-245ENST00000636172 A0A1W2PQ64 194 aa23.23■■□□□ 1.31
CLN3-245ENST00000636172 A0A1W2PQD8 194 aa23.23■■□□□ 1.31
CLN3-245ENST00000636172 ATP9AO75110 1047 aa23.23■■□□□ 1.31
CLN3-245ENST00000636172 LONP1P36776 959 aaKnown RBP23.23■■□□□ 1.31
CLN3-245ENST00000636172 TMEM266Q2M3C6 531 aa23.23■■□□□ 1.31
CLN3-245ENST00000636172 SPECC1Q5M775 1068 aa23.23■■□□□ 1.31
CLN3-245ENST00000636172 LRCH2Q5VUJ6 765 aa23.23■■□□□ 1.31
CLN3-245ENST00000636172 IGSF22Q8N9C0 903 aa23.23■■□□□ 1.31
CLN3-245ENST00000636172 RIT2Q99578 217 aa23.23■■□□□ 1.31
CLN3-245ENST00000636172 VTA1Q9NP79 307 aa23.23■■□□□ 1.31
CLN3-245ENST00000636172 DHX15O43143 795 aaKnown RBP23.22■■□□□ 1.31
CLN3-245ENST00000636172 GNRH1P01148 92 aa23.22■■□□□ 1.31
CLN3-245ENST00000636172 KCNA2P16389 499 aa23.22■■□□□ 1.31
CLN3-245ENST00000636172 SPIRE1Q08AE8 756 aa23.22■■□□□ 1.31
CLN3-245ENST00000636172 RESP18Q5W5W9 173 aa23.22■■□□□ 1.31
CLN3-245ENST00000636172 DOCK5Q9H7D0 1870 aa23.21■■□□□ 1.31
CLN3-245ENST00000636172 FOXN1O15353 648 aa23.21■■□□□ 1.31
CLN3-245ENST00000636172 GAS7O60861 476 aa23.21■■□□□ 1.31
CLN3-245ENST00000636172 CMA1P23946 247 aa23.21■■□□□ 1.31
CLN3-245ENST00000636172 HOXD10P28358 340 aa23.21■■□□□ 1.31
CLN3-245ENST00000636172 SP2Q02086 613 aa23.21■■□□□ 1.31
CLN3-245ENST00000636172 PDGFCQ9NRA1 345 aa23.21■■□□□ 1.31
CLN3-245ENST00000636172 POTEMA6NI47 508 aa23.2■■□□□ 1.3
CLN3-245ENST00000636172 PP2D1A8MPX8 630 aa23.2■■□□□ 1.3
CLN3-245ENST00000636172 CYP2C19P33261 490 aa23.2■■□□□ 1.3
CLN3-245ENST00000636172 PDIA5Q14554 519 aa23.2■■□□□ 1.3
CLN3-245ENST00000636172 TAPT1Q6NXT6 567 aa23.2■■□□□ 1.3
CLN3-245ENST00000636172 USP49Q70CQ1 688 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms