RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 L2HGDHQ9H9P8 463 aa5.48□□□□□ -1.53
SCN1A-211ENST00000635893 SRRDQ9UH36 339 aa5.48□□□□□ -1.53
SCN1A-211ENST00000635893 ST6GALNAC2Q9UJ37 374 aa5.48□□□□□ -1.53
SCN1A-211ENST00000635893 TBX1O43435 398 aa5.47□□□□□ -1.53
SCN1A-211ENST00000635893 ITGAVP06756 1048 aa5.47□□□□□ -1.53
SCN1A-211ENST00000635893 LTBRP36941 435 aa5.47□□□□□ -1.53
SCN1A-211ENST00000635893 SV2CQ496J9 727 aa5.47□□□□□ -1.53
SCN1A-211ENST00000635893 ZNF227Q86WZ6 799 aa5.47□□□□□ -1.53
SCN1A-211ENST00000635893 SLC16A11Q8NCK7 471 aa5.47□□□□□ -1.53
SCN1A-211ENST00000635893 KREMEN2Q8NCW0 462 aa5.47□□□□□ -1.53
SCN1A-211ENST00000635893 RCBTB1Q8NDN9 531 aa5.47□□□□□ -1.53
SCN1A-211ENST00000635893 KISS1RQ969F8 398 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-211ENST00000635893 YTHDC1Q96MU7 727 aaKnown RBP5.47□□□□□ -1.53
SCN1A-211ENST00000635893 TGIF2Q9GZN2 237 aa5.47□□□□□ -1.53
SCN1A-211ENST00000635893 TMEM168Q9H0V1 697 aa5.47□□□□□ -1.53
SCN1A-211ENST00000635893 DTLQ9NZJ0 730 aa5.47□□□□□ -1.53
SCN1A-211ENST00000635893 PPP4R1LQ9P1A2 415 aa5.47□□□□□ -1.53
SCN1A-211ENST00000635893 LRP2BPQ9P2M1 347 aa5.47□□□□□ -1.53
SCN1A-211ENST00000635893 INPP5FQ9Y2H2 1132 aa5.47□□□□□ -1.53
SCN1A-211ENST00000635893 TSC22D4Q9Y3Q8 395 aa5.47□□□□□ -1.53
SCN1A-211ENST00000635893 PCDHB4Q9Y5E5 795 aa5.47□□□□□ -1.53
SCN1A-211ENST00000635893 TCRBV5S2A0A599 114 aa5.46□□□□□ -1.54
SCN1A-211ENST00000635893 NPEPPSL1A6NEC2 478 aa5.46□□□□□ -1.54
SCN1A-211ENST00000635893 TADA3O75528 432 aa5.46□□□□□ -1.54
SCN1A-211ENST00000635893 LSAMPQ13449 338 aa5.46□□□□□ -1.54
SCN1A-211ENST00000635893 EMC4Q5J8M3 183 aa5.46□□□□□ -1.54
SCN1A-211ENST00000635893 STEAP3Q658P3 488 aa5.46□□□□□ -1.54
SCN1A-211ENST00000635893 TEPPQ6URK8 271 aa5.46□□□□□ -1.54
SCN1A-211ENST00000635893 PPIL6Q8IXY8 311 aa5.46□□□□□ -1.54
SCN1A-211ENST00000635893 ARRDC4Q8NCT1 418 aa5.46□□□□□ -1.54
SCN1A-211ENST00000635893 MBD6Q96DN6 1003 aa5.46□□□□□ -1.54
SCN1A-211ENST00000635893 WRNIP1Q96S55 665 aa5.46□□□□□ -1.54
SCN1A-211ENST00000635893 ACBD3Q9H3P7 528 aa5.46□□□□□ -1.54
SCN1A-211ENST00000635893 FBXL7Q9UJT9 491 aa5.46□□□□□ -1.54
SCN1A-211ENST00000635893 SMAD7O15105 426 aaKnown RBP5.45□□□□□ -1.54
SCN1A-211ENST00000635893 FSHBP01225 129 aa5.45□□□□□ -1.54
SCN1A-211ENST00000635893 KCNJ6P48051 423 aa5.45□□□□□ -1.54
SCN1A-211ENST00000635893 MLLT6P55198 1093 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-211ENST00000635893 PKN3Q6P5Z2 889 aa5.45□□□□□ -1.54
SCN1A-211ENST00000635893 C6orf15Q6UXA7 325 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-211ENST00000635893 FAM178BQ8IXR5 827 aa5.45□□□□□ -1.54
SCN1A-211ENST00000635893 SH3RF3Q8TEJ3 882 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-211ENST00000635893 CHAMP1Q96JM3 812 aa5.45□□□□□ -1.54
SCN1A-211ENST00000635893 ZSWIM3Q96MP5 696 aa5.45□□□□□ -1.54
SCN1A-211ENST00000635893 TMEM209Q96SK2 561 aa5.45□□□□□ -1.54
SCN1A-211ENST00000635893 CDK5RAP1Q96SZ6 601 aaKnown RBP5.45□□□□□ -1.54
SCN1A-211ENST00000635893 PCDHA2Q9Y5H9 948 aa5.45□□□□□ -1.54
SCN1A-211ENST00000635893 SUSD5O60279 629 aa5.44□□□□□ -1.54
SCN1A-211ENST00000635893 DGKIO75912 1065 aa5.44□□□□□ -1.54
SCN1A-211ENST00000635893 LRG1P02750 347 aa5.44□□□□□ -1.54
SCN1A-211ENST00000635893 C6P13671 934 aa5.44□□□□□ -1.54
SCN1A-211ENST00000635893 ATF4P18848 351 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-211ENST00000635893 EPHB4P54760 987 aa5.44□□□□□ -1.54
SCN1A-211ENST00000635893 PPP2CBP62714 309 aa5.44□□□□□ -1.54
SCN1A-211ENST00000635893 PPP2CAP67775 309 aa5.44□□□□□ -1.54
SCN1A-211ENST00000635893 ICAM4Q14773 271 aa5.44□□□□□ -1.54
SCN1A-211ENST00000635893 CDSNQ15517 529 aa5.44□□□□□ -1.54
SCN1A-211ENST00000635893 SF1Q15637 639 aaKnown RBP5.44□□□□□ -1.54
SCN1A-211ENST00000635893 PRSS53Q2L4Q9 553 aa5.44□□□□□ -1.54
SCN1A-211ENST00000635893 TNNI3KQ59H18 835 aa5.44□□□□□ -1.54
SCN1A-211ENST00000635893 SPRED1Q7Z699 444 aa5.44□□□□□ -1.54
SCN1A-211ENST00000635893 CIR1Q86X95 450 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-211ENST00000635893 DNERQ8NFT8 737 aa5.44□□□□□ -1.54
SCN1A-211ENST00000635893 PHOSPHO1Q8TCT1 267 aa5.44□□□□□ -1.54
SCN1A-211ENST00000635893 ZCCHC14Q8WYQ9 949 aaKnown RBP5.44□□□□□ -1.54
SCN1A-211ENST00000635893 KLC2Q9H0B6 622 aa5.44□□□□□ -1.54
SCN1A-211ENST00000635893 EPB41L1Q9H4G0 881 aa5.44□□□□□ -1.54
SCN1A-211ENST00000635893 CCSER2Q9H7U1 834 aa5.44□□□□□ -1.54
SCN1A-211ENST00000635893 CD248Q9HCU0 757 aa5.44□□□□□ -1.54
SCN1A-211ENST00000635893 CLDND1Q9NY35 253 aa5.44□□□□□ -1.54
SCN1A-211ENST00000635893 ACTR10Q9NZ32 417 aa5.44□□□□□ -1.54
SCN1A-211ENST00000635893 CROTQ9UKG9 612 aa5.44□□□□□ -1.54
SCN1A-211ENST00000635893 MAFKO60675 156 aa5.43□□□□□ -1.54
SCN1A-211ENST00000635893 LCP1P13796 627 aa5.43□□□□□ -1.54
SCN1A-211ENST00000635893 TACR2P21452 398 aa5.43□□□□□ -1.54
SCN1A-211ENST00000635893 GFRA1P56159 465 aa5.43□□□□□ -1.54
SCN1A-211ENST00000635893 LARP1BQ659C4 914 aaKnown RBP5.43□□□□□ -1.54
SCN1A-211ENST00000635893 ARHGEF18Q6ZSZ5 1173 aa5.43□□□□□ -1.54
SCN1A-211ENST00000635893 KBTBD2Q8IY47 623 aa5.43□□□□□ -1.54
SCN1A-211ENST00000635893 KLHL36Q8N4N3 616 aa5.43□□□□□ -1.54
SCN1A-211ENST00000635893 IGDCC4Q8TDY8 1250 aa5.43□□□□□ -1.54
SCN1A-211ENST00000635893 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.43□□□□□ -1.54
SCN1A-211ENST00000635893 MRRFQ96E11 262 aaKnown RBP5.43□□□□□ -1.54
SCN1A-211ENST00000635893 SORCS2Q96PQ0 1159 aa5.43□□□□□ -1.54
SCN1A-211ENST00000635893 SMOC1Q9H4F8 434 aa5.43□□□□□ -1.54
SCN1A-211ENST00000635893 HSPBP1Q9NZL4 362 aa5.43□□□□□ -1.54
SCN1A-211ENST00000635893 FTSJ1Q9UET6 329 aa5.43□□□□□ -1.54
SCN1A-211ENST00000635893 GPR42O15529 346 aa5.42□□□□□ -1.54
SCN1A-211ENST00000635893 DDAH1O94760 285 aa5.42□□□□□ -1.54
SCN1A-211ENST00000635893 GDF5P43026 501 aa5.42□□□□□ -1.54
SCN1A-211ENST00000635893 DENND5AQ6IQ26 1287 aa5.42□□□□□ -1.54
SCN1A-211ENST00000635893 TMEM145Q8NBT3 493 aa5.42□□□□□ -1.54
SCN1A-211ENST00000635893 BARX1Q9HBU1 254 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-211ENST00000635893 JADE2Q9NQC1 790 aa5.42□□□□□ -1.54
SCN1A-211ENST00000635893 MYOTQ9UBF9 498 aa5.42□□□□□ -1.54
SCN1A-211ENST00000635893 B2RBV5 119 aa5.41□□□□□ -1.54
SCN1A-211ENST00000635893 SUV39H1O43463 412 aa5.41□□□□□ -1.54
SCN1A-211ENST00000635893 NFATC3Q12968 1075 aa5.41□□□□□ -1.54
SCN1A-211ENST00000635893 FXNQ16595 210 aa5.41□□□□□ -1.54
SCN1A-211ENST00000635893 SLC35F1Q5T1Q4 408 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms