RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 SYNRGQ9UMZ2 1314 aa20.64■□□□□ 0.89
CLN3-239ENST00000628023 RBM47A0AV96 593 aaKnown RBP20.64■□□□□ 0.89
CLN3-239ENST00000628023 TXNP10599 105 aaKnown RBP20.64■□□□□ 0.89
CLN3-239ENST00000628023 TLE2Q04725 743 aa20.64■□□□□ 0.89
CLN3-239ENST00000628023 BLIDQ8IZY5 108 aa20.64■□□□□ 0.89
CLN3-239ENST00000628023 PDLIM7Q9NR12 457 aa20.64■□□□□ 0.89
CLN3-239ENST00000628023 GJB4Q9NTQ9 266 aa20.64■□□□□ 0.89
CLN3-239ENST00000628023 MTMR10Q9NXD2 777 aa20.64■□□□□ 0.89
CLN3-239ENST00000628023 KIF3AQ9Y496 699 aa20.64■□□□□ 0.89
CLN3-239ENST00000628023 A0A1W2PQ45 241 aaPredicted RBP20.63■□□□□ 0.89
CLN3-239ENST00000628023 A0A1W2PQY0 241 aa20.63■□□□□ 0.89
CLN3-239ENST00000628023 C6orf222P0C671 652 aaPredicted RBP20.63■□□□□ 0.89
CLN3-239ENST00000628023 MRPS9P82933 396 aaKnown RBP20.63■□□□□ 0.89
CLN3-239ENST00000628023 DUSP28Q4G0W2 176 aa20.63■□□□□ 0.89
CLN3-239ENST00000628023 NLRX1Q86UT6 975 aa20.63■□□□□ 0.89
CLN3-239ENST00000628023 DAGLBQ8NCG7 672 aa20.63■□□□□ 0.89
CLN3-239ENST00000628023 BADQ92934 168 aa20.63■□□□□ 0.89
CLN3-239ENST00000628023 PHF20Q9BVI0 1012 aa20.63■□□□□ 0.89
CLN3-239ENST00000628023 STXBP5LQ9Y2K9 1186 aa20.63■□□□□ 0.89
CLN3-239ENST00000628023 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.63■□□□□ 0.89
CLN3-239ENST00000628023 MOXD2PA6NHM9 499 aa20.62■□□□□ 0.89
CLN3-239ENST00000628023 ADAMTS3O15072 1205 aa20.62■□□□□ 0.89
CLN3-239ENST00000628023 NKRFO15226 690 aaKnown RBP eCLIP20.62■□□□□ 0.89
CLN3-239ENST00000628023 DYNC1LI2O43237 492 aaPredicted RBP20.62■□□□□ 0.89
CLN3-239ENST00000628023 ARIH2O95376 493 aa20.62■□□□□ 0.89
CLN3-239ENST00000628023 CLTBP09497 229 aa20.62■□□□□ 0.89
CLN3-239ENST00000628023 ZNF76P36508 570 aa20.62■□□□□ 0.89
CLN3-239ENST00000628023 SREBF1P36956 1147 aa20.62■□□□□ 0.89
CLN3-239ENST00000628023 ACLYP53396 1101 aa20.62■□□□□ 0.89
CLN3-239ENST00000628023 ARHGAP4P98171 946 aa20.62■□□□□ 0.89
CLN3-239ENST00000628023 FAM109BQ6ICB4 259 aaPredicted RBP20.62■□□□□ 0.89
CLN3-239ENST00000628023 KCNV1Q6PIU1 500 aa20.62■□□□□ 0.89
CLN3-239ENST00000628023 HSCBQ8IWL3 235 aa20.62■□□□□ 0.89
CLN3-239ENST00000628023 OR6J1Q8NGC5 347 aa20.62■□□□□ 0.89
CLN3-239ENST00000628023 C8orf76Q96K31 380 aa20.62■□□□□ 0.89
CLN3-239ENST00000628023 STARD7Q9NQZ5 370 aa20.62■□□□□ 0.89
CLN3-239ENST00000628023 GNEQ9Y223 722 aaKnown RBP20.62■□□□□ 0.89
CLN3-239ENST00000628023 KIAA1217Q5T5P2 1943 aa20.61■□□□□ 0.89
CLN3-239ENST00000628023 TRIM43BA6NCK2 446 aa20.61■□□□□ 0.89
CLN3-239ENST00000628023 DCDC2CA8MYV0 355 aa20.61■□□□□ 0.89
CLN3-239ENST00000628023 FIBPO43427 364 aa20.61■□□□□ 0.89
CLN3-239ENST00000628023 ADAMTS4O75173 837 aa20.61■□□□□ 0.89
CLN3-239ENST00000628023 KRT2P35908 639 aa20.61■□□□□ 0.89
CLN3-239ENST00000628023 LY6KQ17RY6 165 aa20.61■□□□□ 0.89
CLN3-239ENST00000628023 TMEM63BQ5T3F8 832 aa20.61■□□□□ 0.89
CLN3-239ENST00000628023 PCSK9Q8NBP7 692 aaKnown RBP20.61■□□□□ 0.89
CLN3-239ENST00000628023 TRIM43Q96BQ3 446 aaPredicted RBP20.61■□□□□ 0.89
CLN3-239ENST00000628023 INPP4AQ96PE3 977 aaPredicted RBP20.61■□□□□ 0.89
CLN3-239ENST00000628023 SMC3Q9UQE7 1217 aa20.61■□□□□ 0.89
CLN3-239ENST00000628023 CCDC194A0A1B0GVG4 234 aa20.6■□□□□ 0.89
CLN3-239ENST00000628023 K7ELQ4 463 aaPredicted RBP20.6■□□□□ 0.89
CLN3-239ENST00000628023 PQBP1O60828 265 aaKnown RBP20.6■□□□□ 0.89
CLN3-239ENST00000628023 GH1P01241 217 aa20.6■□□□□ 0.89
CLN3-239ENST00000628023 RAG1P15918 1043 aa20.6■□□□□ 0.89
CLN3-239ENST00000628023 PTGS1P23219 599 aa20.6■□□□□ 0.89
CLN3-239ENST00000628023 GJA9P57773 515 aa20.6■□□□□ 0.89
CLN3-239ENST00000628023 GUCY1B3Q02153 619 aa20.6■□□□□ 0.89
CLN3-239ENST00000628023 SAFBQ15424 915 aaKnown RBP eCLIP20.6■□□□□ 0.89
CLN3-239ENST00000628023 SHHQ15465 462 aa20.6■□□□□ 0.89
CLN3-239ENST00000628023 KCNA10Q16322 511 aa20.6■□□□□ 0.89
CLN3-239ENST00000628023 KRT40Q6A162 431 aa20.6■□□□□ 0.89
CLN3-239ENST00000628023 KRT25Q7Z3Z0 450 aa20.6■□□□□ 0.89
CLN3-239ENST00000628023 SH3RF1Q7Z6J0 888 aa20.6■□□□□ 0.89
CLN3-239ENST00000628023 COPS5Q92905 334 aa20.6■□□□□ 0.89
CLN3-239ENST00000628023 CDHR1Q96JP9 859 aa20.6■□□□□ 0.89
CLN3-239ENST00000628023 GLT1D1Q96MS3 346 aa20.6■□□□□ 0.89
CLN3-239ENST00000628023 TOX2Q96NM4 488 aa20.6■□□□□ 0.89
CLN3-239ENST00000628023 UPF3AQ9H1J1 476 aaKnown RBP20.6■□□□□ 0.89
CLN3-239ENST00000628023 TMEM39AQ9NV64 488 aa20.6■□□□□ 0.89
CLN3-239ENST00000628023 Q9Y3F1 56 aa20.6■□□□□ 0.89
CLN3-239ENST00000628023 MYADML2A6NDP7 307 aa20.59■□□□□ 0.89
CLN3-239ENST00000628023 RGS20O76081 388 aa20.59■□□□□ 0.89
CLN3-239ENST00000628023 MMP1P03956 469 aa20.59■□□□□ 0.89
CLN3-239ENST00000628023 MTMR1Q13613 665 aa20.59■□□□□ 0.89
CLN3-239ENST00000628023 NPY5RQ15761 445 aa20.59■□□□□ 0.89
CLN3-239ENST00000628023 FSCN1Q16658 493 aaKnown RBP20.59■□□□□ 0.89
CLN3-239ENST00000628023 BRDTQ58F21 947 aaPredicted RBP20.59■□□□□ 0.89
CLN3-239ENST00000628023 ZNF697Q5TEC3 545 aa20.59■□□□□ 0.89
CLN3-239ENST00000628023 CCDC62Q6P9F0 684 aa20.59■□□□□ 0.89
CLN3-239ENST00000628023 KLHDC9Q8NEP7 349 aa20.59■□□□□ 0.89
CLN3-239ENST00000628023 VTI1AQ96AJ9 217 aa20.59■□□□□ 0.89
CLN3-239ENST00000628023 GPRASP2Q96D09 838 aa20.59■□□□□ 0.89
CLN3-239ENST00000628023 DDX41Q9UJV9 622 aaKnown RBP20.59■□□□□ 0.89
CLN3-239ENST00000628023 LTBP2Q14767 1821 aa20.59■□□□□ 0.89
CLN3-239ENST00000628023 MROH7Q68CQ1 1323 aa20.58■□□□□ 0.89
CLN3-239ENST00000628023 KIAA0355O15063 1070 aa20.58■□□□□ 0.89
CLN3-239ENST00000628023 ZEB2O60315 1214 aa20.58■□□□□ 0.89
CLN3-239ENST00000628023 TGFB3P10600 412 aa20.58■□□□□ 0.89
CLN3-239ENST00000628023 CST5P28325 142 aaPredicted RBP20.58■□□□□ 0.89
CLN3-239ENST00000628023 GJB2P29033 226 aa20.58■□□□□ 0.89
CLN3-239ENST00000628023 ICAM3P32942 547 aa20.58■□□□□ 0.89
CLN3-239ENST00000628023 CPT1AP50416 773 aa20.58■□□□□ 0.89
CLN3-239ENST00000628023 BEX3Q00994 111 aa20.58■□□□□ 0.89
CLN3-239ENST00000628023 NONOQ15233 471 aaKnown RBP eCLIP20.58■□□□□ 0.89
CLN3-239ENST00000628023 CEP55Q53EZ4 464 aa20.58■□□□□ 0.89
CLN3-239ENST00000628023 GNASQ5JWF2 1037 aa20.58■□□□□ 0.89
CLN3-239ENST00000628023 OXER1Q8TDS5 423 aa20.58■□□□□ 0.89
CLN3-239ENST00000628023 TBCKQ8TEA7 893 aa20.58■□□□□ 0.89
CLN3-239ENST00000628023 SNX21Q969T3 373 aa20.58■□□□□ 0.89
CLN3-239ENST00000628023 MXRA8Q9BRK3 442 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms