RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 ICAM4Q14773 271 aa5.06□□□□□ -1.6
SCN1A-208ENST00000625916 NLRP10Q86W26 655 aa5.06□□□□□ -1.6
SCN1A-208ENST00000625916 CDK5RAP1Q96SZ6 601 aaKnown RBP5.06□□□□□ -1.6
SCN1A-208ENST00000625916 SCAND2PQ9GZW5 306 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-208ENST00000625916 LRP2BPQ9P2M1 347 aa5.06□□□□□ -1.6
SCN1A-208ENST00000625916 TMEFF2Q9UIK5 374 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-208ENST00000625916 ZNF652Q9Y2D9 606 aa5.06□□□□□ -1.6
SCN1A-208ENST00000625916 TSC22D4Q9Y3Q8 395 aa5.06□□□□□ -1.6
SCN1A-208ENST00000625916 HGSO14964 777 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-208ENST00000625916 HOXC12P31275 282 aa5.05□□□□□ -1.6
SCN1A-208ENST00000625916 CYP4F3Q08477 520 aa5.05□□□□□ -1.6
SCN1A-208ENST00000625916 SV2CQ496J9 727 aa5.05□□□□□ -1.6
SCN1A-208ENST00000625916 ARHGEF18Q6ZSZ5 1173 aa5.05□□□□□ -1.6
SCN1A-208ENST00000625916 CIR1Q86X95 450 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-208ENST00000625916 NT5DC4Q86YG4 428 aa5.05□□□□□ -1.6
SCN1A-208ENST00000625916 CCDC103Q8IW40 242 aa5.05□□□□□ -1.6
SCN1A-208ENST00000625916 Q8N1Y9 231 aa5.05□□□□□ -1.6
SCN1A-208ENST00000625916 ARRDC4Q8NCT1 418 aa5.05□□□□□ -1.6
SCN1A-208ENST00000625916 SEC16BQ96JE7 1060 aa5.05□□□□□ -1.6
SCN1A-208ENST00000625916 YTHDC1Q96MU7 727 aaKnown RBP5.05□□□□□ -1.6
SCN1A-208ENST00000625916 KLC2Q9H0B6 622 aa5.05□□□□□ -1.6
SCN1A-208ENST00000625916 DEF6Q9H4E7 631 aa5.05□□□□□ -1.6
SCN1A-208ENST00000625916 DTLQ9NZJ0 730 aa5.05□□□□□ -1.6
SCN1A-208ENST00000625916 FTSJ1Q9UET6 329 aa5.05□□□□□ -1.6
SCN1A-208ENST00000625916 PCDHB4Q9Y5E5 795 aa5.05□□□□□ -1.6
SCN1A-208ENST00000625916 VAMP1P23763 118 aa5.04□□□□□ -1.6
SCN1A-208ENST00000625916 KCNJ6P48051 423 aa5.04□□□□□ -1.6
SCN1A-208ENST00000625916 MLLT6P55198 1093 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-208ENST00000625916 PPP2CBP62714 309 aa5.04□□□□□ -1.6
SCN1A-208ENST00000625916 PPP2CAP67775 309 aa5.04□□□□□ -1.6
SCN1A-208ENST00000625916 STEAP3Q658P3 488 aa5.04□□□□□ -1.6
SCN1A-208ENST00000625916 ZNF585AQ6P3V2 769 aa5.04□□□□□ -1.6
SCN1A-208ENST00000625916 TEPPQ6URK8 271 aa5.04□□□□□ -1.6
SCN1A-208ENST00000625916 USP51Q70EK9 711 aa5.04□□□□□ -1.6
SCN1A-208ENST00000625916 PALM2Q8IXS6 379 aa5.04□□□□□ -1.6
SCN1A-208ENST00000625916 KBTBD2Q8IY47 623 aa5.04□□□□□ -1.6
SCN1A-208ENST00000625916 IGDCC4Q8TDY8 1250 aa5.04□□□□□ -1.6
SCN1A-208ENST00000625916 WRNIP1Q96S55 665 aa5.04□□□□□ -1.6
SCN1A-208ENST00000625916 FBXL7Q9UJT9 491 aa5.04□□□□□ -1.6
SCN1A-208ENST00000625916 STRIP2Q9ULQ0 834 aa5.04□□□□□ -1.6
SCN1A-208ENST00000625916 PCDHA2Q9Y5H9 948 aa5.04□□□□□ -1.6
SCN1A-208ENST00000625916 TCRBV5S2A0A599 114 aa5.03□□□□□ -1.6
SCN1A-208ENST00000625916 H7BY64 318 aa5.03□□□□□ -1.6
SCN1A-208ENST00000625916 GPR42O15529 346 aa5.03□□□□□ -1.6
SCN1A-208ENST00000625916 TBX1O43435 398 aa5.03□□□□□ -1.6
SCN1A-208ENST00000625916 B4GALT4O60513 344 aa5.03□□□□□ -1.6
SCN1A-208ENST00000625916 ITGAVP06756 1048 aa5.03□□□□□ -1.6
SCN1A-208ENST00000625916 LSAMPQ13449 338 aa5.03□□□□□ -1.6
SCN1A-208ENST00000625916 CDSNQ15517 529 aa5.03□□□□□ -1.6
SCN1A-208ENST00000625916 TRMT10BQ6PF06 316 aaKnown RBP5.03□□□□□ -1.6
SCN1A-208ENST00000625916 ZFPM1Q8IX07 1006 aa5.03□□□□□ -1.6
SCN1A-208ENST00000625916 PPIL6Q8IXY8 311 aa5.03□□□□□ -1.6
SCN1A-208ENST00000625916 RCBTB1Q8NDN9 531 aa5.03□□□□□ -1.6
SCN1A-208ENST00000625916 MBD6Q96DN6 1003 aa5.03□□□□□ -1.6
SCN1A-208ENST00000625916 TMEM209Q96SK2 561 aa5.03□□□□□ -1.6
SCN1A-208ENST00000625916 MRIQ9BWK5 157 aa5.03□□□□□ -1.6
SCN1A-208ENST00000625916 VPS11Q9H270 941 aa5.03□□□□□ -1.6
SCN1A-208ENST00000625916 BARX1Q9HBU1 254 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-208ENST00000625916 CLDND1Q9NY35 253 aa5.03□□□□□ -1.6
SCN1A-208ENST00000625916 ZDHHC9Q9Y397 364 aa5.03□□□□□ -1.6
SCN1A-208ENST00000625916 TCAF1Q9Y4C2 921 aa5.03□□□□□ -1.6
SCN1A-208ENST00000625916 ARNTLO00327 626 aa5.02□□□□□ -1.61
SCN1A-208ENST00000625916 CYR61O00622 381 aa5.02□□□□□ -1.61
SCN1A-208ENST00000625916 FZD7O75084 574 aa5.02□□□□□ -1.61
SCN1A-208ENST00000625916 DGKIO75912 1065 aa5.02□□□□□ -1.61
SCN1A-208ENST00000625916 CPP00450 1065 aa5.02□□□□□ -1.61
SCN1A-208ENST00000625916 LRG1P02750 347 aa5.02□□□□□ -1.61
SCN1A-208ENST00000625916 LTBRP36941 435 aa5.02□□□□□ -1.61
SCN1A-208ENST00000625916 EPHB4P54760 987 aa5.02□□□□□ -1.61
SCN1A-208ENST00000625916 HDLBPQ00341 1268 aaKnown RBP5.02□□□□□ -1.61
SCN1A-208ENST00000625916 PRSS53Q2L4Q9 553 aa5.02□□□□□ -1.61
SCN1A-208ENST00000625916 ACBD5Q5T8D3 534 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-208ENST00000625916 PKN3Q6P5Z2 889 aa5.02□□□□□ -1.61
SCN1A-208ENST00000625916 CRIP3Q6Q6R5 217 aa5.02□□□□□ -1.61
SCN1A-208ENST00000625916 C6orf15Q6UXA7 325 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-208ENST00000625916 TMC5Q6UXY8 1006 aa5.02□□□□□ -1.61
SCN1A-208ENST00000625916 ZNF227Q86WZ6 799 aa5.02□□□□□ -1.61
SCN1A-208ENST00000625916 Q8N1X5 172 aa5.02□□□□□ -1.61
SCN1A-208ENST00000625916 KLHL36Q8N4N3 616 aa5.02□□□□□ -1.61
SCN1A-208ENST00000625916 ZCCHC14Q8WYQ9 949 aaKnown RBP5.02□□□□□ -1.61
SCN1A-208ENST00000625916 CCDC140Q96MF4 163 aa5.02□□□□□ -1.61
SCN1A-208ENST00000625916 KRTAP9-8Q9BYQ0 159 aa5.02□□□□□ -1.61
SCN1A-208ENST00000625916 CD248Q9HCU0 757 aa5.02□□□□□ -1.61
SCN1A-208ENST00000625916 MYOTQ9UBF9 498 aa5.02□□□□□ -1.61
SCN1A-208ENST00000625916 INPP5FQ9Y2H2 1132 aa5.02□□□□□ -1.61
SCN1A-208ENST00000625916 TADA3O75528 432 aa5.01□□□□□ -1.61
SCN1A-208ENST00000625916 AMHP03971 560 aa5.01□□□□□ -1.61
SCN1A-208ENST00000625916 SLPIP03973 132 aa5.01□□□□□ -1.61
SCN1A-208ENST00000625916 SCG5P05408 212 aa5.01□□□□□ -1.61
SCN1A-208ENST00000625916 LCP1P13796 627 aa5.01□□□□□ -1.61
SCN1A-208ENST00000625916 NFATC3Q12968 1075 aa5.01□□□□□ -1.61
SCN1A-208ENST00000625916 EMC4Q5J8M3 183 aa5.01□□□□□ -1.61
SCN1A-208ENST00000625916 LARP1BQ659C4 914 aaKnown RBP5.01□□□□□ -1.61
SCN1A-208ENST00000625916 SLFN13Q68D06 897 aa5.01□□□□□ -1.61
SCN1A-208ENST00000625916 KREMEN2Q8NCW0 462 aa5.01□□□□□ -1.61
SCN1A-208ENST00000625916 DNERQ8NFT8 737 aa5.01□□□□□ -1.61
SCN1A-208ENST00000625916 PTPN18Q99952 460 aa5.01□□□□□ -1.61
SCN1A-208ENST00000625916 ZNF747Q9BV97 191 aa5.01□□□□□ -1.61
SCN1A-208ENST00000625916 EPB41L1Q9H4G0 881 aa5.01□□□□□ -1.61
SCN1A-208ENST00000625916 MUSKO15146 869 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms