RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 MYOCDQ8IZQ8 938 aa14.33□□□□□ -0.12
CCDC88A-214ENST00000621814 BMP2KQ9NSY1 1161 aaPredicted RBP14.33□□□□□ -0.12
CCDC88A-214ENST00000621814 TACC1O75410 805 aa14.33□□□□□ -0.12
CCDC88A-214ENST00000621814 MYBL2P10244 700 aa14.33□□□□□ -0.12
CCDC88A-214ENST00000621814 MRPL12P52815 198 aaKnown RBP14.33□□□□□ -0.12
CCDC88A-214ENST00000621814 CRY2Q49AN0 593 aa14.33□□□□□ -0.12
CCDC88A-214ENST00000621814 CERS3Q8IU89 383 aa14.33□□□□□ -0.12
CCDC88A-214ENST00000621814 KIAA0825Q8IV33 1275 aa14.33□□□□□ -0.12
CCDC88A-214ENST00000621814 HDAC7Q8WUI4 952 aa14.33□□□□□ -0.12
CCDC88A-214ENST00000621814 DBNDD1Q9H9R9 158 aa14.33□□□□□ -0.12
CCDC88A-214ENST00000621814 PLAGL2Q9UPG8 496 aa14.33□□□□□ -0.12
CCDC88A-214ENST00000621814 ZSCAN26Q16670 478 aa14.32□□□□□ -0.12
CCDC88A-214ENST00000621814 PTPROQ16827 1216 aa14.32□□□□□ -0.12
CCDC88A-214ENST00000621814 CCDC181Q5TID7 509 aa14.32□□□□□ -0.12
CCDC88A-214ENST00000621814 RIC8AQ9NPQ8 531 aa14.32□□□□□ -0.12
CCDC88A-214ENST00000621814 SIK3Q9Y2K2 1263 aa14.32□□□□□ -0.12
CCDC88A-214ENST00000621814 PCDHA1Q9Y5I3 950 aa14.32□□□□□ -0.12
CCDC88A-214ENST00000621814 GAKO14976 1311 aa14.32□□□□□ -0.12
CCDC88A-214ENST00000621814 PVALEFA0A1B0GWK0 134 aa14.32□□□□□ -0.12
CCDC88A-214ENST00000621814 FGFR1OPO95684 399 aaKnown RBP14.32□□□□□ -0.12
CCDC88A-214ENST00000621814 POLR2FP61218 127 aaKnown RBP14.32□□□□□ -0.12
CCDC88A-214ENST00000621814 TUBB4BP68371 445 aa14.32□□□□□ -0.12
CCDC88A-214ENST00000621814 CKAP4Q07065 602 aaKnown RBP14.32□□□□□ -0.12
CCDC88A-214ENST00000621814 GUF1Q8N442 669 aaKnown RBP14.32□□□□□ -0.12
CCDC88A-214ENST00000621814 FAM163AQ96GL9 167 aaPredicted RBP14.32□□□□□ -0.12
CCDC88A-214ENST00000621814 ESYT2A0FGR8 921 aa14.31□□□□□ -0.12
CCDC88A-214ENST00000621814 PPP1R2P41236 205 aa14.31□□□□□ -0.12
CCDC88A-214ENST00000621814 EPS15P42566 896 aa14.31□□□□□ -0.12
CCDC88A-214ENST00000621814 SLC1A4P43007 532 aa14.31□□□□□ -0.12
CCDC88A-214ENST00000621814 NT5C2P49902 561 aa14.31□□□□□ -0.12
CCDC88A-214ENST00000621814 KCTD19Q17RG1 926 aaPredicted RBP14.31□□□□□ -0.12
CCDC88A-214ENST00000621814 FAM26FQ5R3K3 315 aa14.31□□□□□ -0.12
CCDC88A-214ENST00000621814 CDC42EP5Q6NZY7 148 aa14.31□□□□□ -0.12
CCDC88A-214ENST00000621814 C15orf52Q6ZUT6 534 aaKnown RBP14.31□□□□□ -0.12
CCDC88A-214ENST00000621814 CCDC84Q86UT8 332 aaPredicted RBP14.31□□□□□ -0.12
CCDC88A-214ENST00000621814 GPBP1Q86WP2 473 aa14.31□□□□□ -0.12
CCDC88A-214ENST00000621814 SALL4Q9UJQ4 1053 aa14.31□□□□□ -0.12
CCDC88A-214ENST00000621814 ZBTB5O15062 677 aa14.31□□□□□ -0.12
CCDC88A-214ENST00000621814 SHMT1P34896 483 aa14.31□□□□□ -0.12
CCDC88A-214ENST00000621814 GABPAQ06546 454 aa14.31□□□□□ -0.12
CCDC88A-214ENST00000621814 TAF3Q5VWG9 929 aa14.31□□□□□ -0.12
CCDC88A-214ENST00000621814 SEPT12Q8IYM1 358 aa14.31□□□□□ -0.12
CCDC88A-214ENST00000621814 LSM14BQ9BX40 385 aaKnown RBP14.31□□□□□ -0.12
CCDC88A-214ENST00000621814 HLA-DOAP06340 250 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 PDIA5Q14554 519 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 DNAAF5Q86Y56 855 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 TRIM58Q8NG06 486 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 LRRC1Q9BTT6 524 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 FAM204AQ9H8W3 233 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 POTEFA5A3E0 1075 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 TRIM37O94972 964 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 PLA2G4BP0C869 781 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 POTEIP0CG38 1075 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 SMARCA1P28370 1054 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 FKBP3Q00688 224 aaKnown RBP14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 RAPGEF1Q13905 1077 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 PRR16Q569H4 304 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 WDR93Q6P2C0 686 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 POTEGQ6S5H5 508 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 POTEEQ6S8J3 1075 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 SLC30A10Q6XR72 485 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 LRRC55Q6ZSA7 311 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 MS4A14Q96JA4 679 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 TSGA10Q9BZW7 698 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 SH2D4AQ9H788 454 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 JRKLQ9Y4A0 524 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 COL4A3BPQ9Y5P4 624 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 DDX60LQ5H9U9 1706 aaKnown RBP14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 A0A1W2PQJ5 194 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 LRRC63Q05C16 580 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 KCNMA1Q12791 1236 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 QRICH1Q2TAL8 776 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 FNBP4Q8N3X1 1017 aaPredicted RBP14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 GOLGA6L1Q8N7Z2 621 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 CERKQ8TCT0 537 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 EXOC4Q96A65 974 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 GJD4Q96KN9 370 aaPredicted RBP14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 ALS2CR12Q96Q35 445 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 ACBD3Q9H3P7 528 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 SNX12Q9UMY4 172 aa14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 PACSIN2Q9UNF0 486 aaPredicted RBP14.3□□□□□ -0.12
CCDC88A-214ENST00000621814 NAV1Q8NEY1 1877 aa14.29□□□□□ -0.12
CCDC88A-214ENST00000621814 RNF40O75150 1001 aa14.29□□□□□ -0.12
CCDC88A-214ENST00000621814 GDF11O95390 407 aa14.29□□□□□ -0.12
CCDC88A-214ENST00000621814 EEF2P13639 858 aaKnown RBP14.29□□□□□ -0.12
CCDC88A-214ENST00000621814 CYP4A11Q02928 519 aa14.29□□□□□ -0.12
CCDC88A-214ENST00000621814 PABPC4Q13310 644 aaKnown RBP eCLIP14.29□□□□□ -0.12
CCDC88A-214ENST00000621814 LEKR1Q6ZMV7 388 aa14.29□□□□□ -0.12
CCDC88A-214ENST00000621814 DNAJC19Q96DA6 116 aa14.29□□□□□ -0.12
CCDC88A-214ENST00000621814 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.29□□□□□ -0.12
CCDC88A-214ENST00000621814 MAP9Q49MG5 647 aa14.29□□□□□ -0.12
CCDC88A-214ENST00000621814 CCDC70Q6NSX1 233 aa14.29□□□□□ -0.12
CCDC88A-214ENST00000621814 CREG2Q8IUH2 290 aa14.29□□□□□ -0.12
CCDC88A-214ENST00000621814 DMGDHQ9UI17 866 aaKnown RBP14.29□□□□□ -0.12
CCDC88A-214ENST00000621814 BTAF1O14981 1849 aa14.29□□□□□ -0.12
CCDC88A-214ENST00000621814 SNHG28P0DPA3 235 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 GGCXP38435 758 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 PSMC6P62333 389 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 ADAM9Q13443 819 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms