RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 ZNF652Q9Y2D9 606 aa7.93□□□□□ -1.14
VPS29-212ENST00000621131 PRICKLE3O43900 615 aaPredicted RBP7.92□□□□□ -1.14
VPS29-212ENST00000621131 MSCO60682 206 aa7.92□□□□□ -1.14
VPS29-212ENST00000621131 EMC4Q5J8M3 183 aa7.92□□□□□ -1.14
VPS29-212ENST00000621131 KYQ8NBH2 561 aa7.92□□□□□ -1.14
VPS29-212ENST00000621131 GPR27Q9NS67 375 aa7.92□□□□□ -1.14
VPS29-212ENST00000621131 NTMQ9P121 344 aa7.92□□□□□ -1.14
VPS29-212ENST00000621131 TCRBV5S2A0A599 114 aa7.91□□□□□ -1.14
VPS29-212ENST00000621131 SMARCA5O60264 1052 aaPredicted RBP7.91□□□□□ -1.14
VPS29-212ENST00000621131 THBS2P35442 1172 aa7.91□□□□□ -1.14
VPS29-212ENST00000621131 CHRNA2Q15822 529 aa7.91□□□□□ -1.14
VPS29-212ENST00000621131 SKOR2Q2VWA4 1001 aaPredicted RBP7.91□□□□□ -1.14
VPS29-212ENST00000621131 STEAP3Q658P3 488 aa7.91□□□□□ -1.14
VPS29-212ENST00000621131 STK32CQ86UX6 486 aa7.91□□□□□ -1.14
VPS29-212ENST00000621131 ZNF761Q86XN6 746 aaPredicted RBP7.91□□□□□ -1.14
VPS29-212ENST00000621131 ARRDC4Q8NCT1 418 aa7.91□□□□□ -1.14
VPS29-212ENST00000621131 ST13P5Q8NFI4 369 aaPredicted RBP7.91□□□□□ -1.14
VPS29-212ENST00000621131 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.91□□□□□ -1.14
VPS29-212ENST00000621131 ARHGEF4Q9NR80 690 aa7.91□□□□□ -1.14
VPS29-212ENST00000621131 IQCA1LA6NCM1 817 aa7.9□□□□□ -1.14
VPS29-212ENST00000621131 FGFR1P11362 822 aa7.9□□□□□ -1.14
VPS29-212ENST00000621131 RPL13P26373 211 aaKnown RBP7.9□□□□□ -1.14
VPS29-212ENST00000621131 STAT5AP42229 794 aa7.9□□□□□ -1.14
VPS29-212ENST00000621131 ITGA1P56199 1179 aa7.9□□□□□ -1.14
VPS29-212ENST00000621131 PRR31Q5SQ13 230 aa7.9□□□□□ -1.14
VPS29-212ENST00000621131 RSPO2Q6UXX9 243 aaPredicted RBP7.9□□□□□ -1.14
VPS29-212ENST00000621131 ZC3H18Q86VM9 953 aaKnown RBP7.9□□□□□ -1.14
VPS29-212ENST00000621131 TTLL6Q8N841 843 aa7.9□□□□□ -1.14
VPS29-212ENST00000621131 OSBP2Q969R2 916 aa7.9□□□□□ -1.14
VPS29-212ENST00000621131 AARSD1Q9BTE6 412 aaKnown RBP7.9□□□□□ -1.14
VPS29-212ENST00000621131 KRTAP9-3Q9BYQ3 159 aa7.9□□□□□ -1.14
VPS29-212ENST00000621131 EPB41L1Q9H4G0 881 aa7.9□□□□□ -1.14
VPS29-212ENST00000621131 NGRNQ9NPE2 291 aaKnown RBP7.9□□□□□ -1.14
VPS29-212ENST00000621131 DUSP10Q9Y6W6 482 aa7.9□□□□□ -1.14
VPS29-212ENST00000621131 PRODHO43272 600 aa7.89□□□□□ -1.15
VPS29-212ENST00000621131 DGKIO75912 1065 aa7.89□□□□□ -1.15
VPS29-212ENST00000621131 ZC3H6P61129 1189 aaKnown RBP7.89□□□□□ -1.15
VPS29-212ENST00000621131 RTP5Q14D33 572 aa7.89□□□□□ -1.15
VPS29-212ENST00000621131 NTRK3Q16288 839 aa7.89□□□□□ -1.15
VPS29-212ENST00000621131 NAALADL2Q58DX5 795 aa7.89□□□□□ -1.15
VPS29-212ENST00000621131 USP53Q70EK8 1073 aa7.89□□□□□ -1.15
VPS29-212ENST00000621131 ADAMTS17Q8TE56 1095 aa7.89□□□□□ -1.15
VPS29-212ENST00000621131 JAM3Q9BX67 310 aa7.89□□□□□ -1.15
VPS29-212ENST00000621131 USP40Q9NVE5 1235 aa7.89□□□□□ -1.15
VPS29-212ENST00000621131 MSRB2Q9Y3D2 182 aa7.89□□□□□ -1.15
VPS29-212ENST00000621131 CELA3BP08861 270 aa7.88□□□□□ -1.15
VPS29-212ENST00000621131 PABPC1P11940 636 aaKnown RBP7.88□□□□□ -1.15
VPS29-212ENST00000621131 NKX3-2P78367 333 aa7.88□□□□□ -1.15
VPS29-212ENST00000621131 FERMT3Q86UX7 667 aa7.88□□□□□ -1.15
VPS29-212ENST00000621131 DCAF4Q8WV16 495 aa7.88□□□□□ -1.15
VPS29-212ENST00000621131 TOE1Q96GM8 510 aaKnown RBP7.88□□□□□ -1.15
VPS29-212ENST00000621131 PHF20Q9BVI0 1012 aa7.88□□□□□ -1.15
VPS29-212ENST00000621131 LNPKQ9C0E8 428 aa7.88□□□□□ -1.15
VPS29-212ENST00000621131 PPARGC1AQ9UBK2 798 aaKnown RBP7.88□□□□□ -1.15
VPS29-212ENST00000621131 PCDHB4Q9Y5E5 795 aa7.88□□□□□ -1.15
VPS29-212ENST00000621131 STK10O94804 968 aaKnown RBP7.87□□□□□ -1.15
VPS29-212ENST00000621131 LRG1P02750 347 aa7.87□□□□□ -1.15
VPS29-212ENST00000621131 ADAM9Q13443 819 aa7.87□□□□□ -1.15
VPS29-212ENST00000621131 LCE5AQ5TCM9 118 aa7.87□□□□□ -1.15
VPS29-212ENST00000621131 KCNT2Q6UVM3 1135 aa7.87□□□□□ -1.15
VPS29-212ENST00000621131 NSMFQ6X4W1 530 aa7.87□□□□□ -1.15
VPS29-212ENST00000621131 DDX1Q92499 740 aaKnown RBP7.87□□□□□ -1.15
VPS29-212ENST00000621131 ZNF669Q96BR6 464 aaPredicted RBP7.87□□□□□ -1.15
VPS29-212ENST00000621131 SMOC1Q9H4F8 434 aa7.87□□□□□ -1.15
VPS29-212ENST00000621131 PODXL2Q9NZ53 605 aa7.87□□□□□ -1.15
VPS29-212ENST00000621131 DTLQ9NZJ0 730 aa7.87□□□□□ -1.15
VPS29-212ENST00000621131 GJA9P57773 515 aa7.86□□□□□ -1.15
VPS29-212ENST00000621131 YOD1Q5VVQ6 348 aaPredicted RBP7.86□□□□□ -1.15
VPS29-212ENST00000621131 LBX2Q6XYB7 198 aa7.86□□□□□ -1.15
VPS29-212ENST00000621131 LRRC47Q8N1G4 583 aaKnown RBP7.86□□□□□ -1.15
VPS29-212ENST00000621131 PHOSPHO1Q8TCT1 267 aa7.86□□□□□ -1.15
VPS29-212ENST00000621131 TRIM55Q9BYV6 548 aa7.86□□□□□ -1.15
VPS29-212ENST00000621131 SLC6A20Q9NP91 592 aa7.86□□□□□ -1.15
VPS29-212ENST00000621131 WASF3Q9UPY6 502 aa7.86□□□□□ -1.15
VPS29-212ENST00000621131 TRAV20A0A0B4J274 112 aa7.85□□□□□ -1.15
VPS29-212ENST00000621131 UBXN11Q5T124 520 aa7.85□□□□□ -1.15
VPS29-212ENST00000621131 ERICH6BQ5W0A0 696 aa7.85□□□□□ -1.15
VPS29-212ENST00000621131 CYP4F22Q6NT55 531 aa7.85□□□□□ -1.15
VPS29-212ENST00000621131 TEPPQ6URK8 271 aa7.85□□□□□ -1.15
VPS29-212ENST00000621131 CKAP2LQ8IYA6 745 aa7.85□□□□□ -1.15
VPS29-212ENST00000621131 ZFYVE21Q9BQ24 234 aa7.85□□□□□ -1.15
VPS29-212ENST00000621131 YIPF4Q9BSR8 244 aa7.85□□□□□ -1.15
VPS29-212ENST00000621131 HSPBP1Q9NZL4 362 aa7.85□□□□□ -1.15
VPS29-212ENST00000621131 MYOTQ9UBF9 498 aa7.85□□□□□ -1.15
VPS29-212ENST00000621131 ASH2LQ9UBL3 628 aa7.85□□□□□ -1.15
VPS29-212ENST00000621131 BLACEA4D250 179 aa7.84□□□□□ -1.15
VPS29-212ENST00000621131 DDX3XO00571 662 aaKnown RBP eCLIP7.84□□□□□ -1.152e-8■■□□□ 13
VPS29-212ENST00000621131 PLP2Q04941 152 aa7.84□□□□□ -1.15
VPS29-212ENST00000621131 FAM26FQ5R3K3 315 aa7.84□□□□□ -1.15
VPS29-212ENST00000621131 STYK1Q6J9G0 422 aa7.84□□□□□ -1.15
VPS29-212ENST00000621131 SPATC1Q76KD6 591 aa7.84□□□□□ -1.15
VPS29-212ENST00000621131 OTOP3Q7RTS5 596 aa7.84□□□□□ -1.15
VPS29-212ENST00000621131 PIP4K2CQ8TBX8 421 aa7.84□□□□□ -1.15
VPS29-212ENST00000621131 CLEC4DQ8WXI8 215 aa7.84□□□□□ -1.15
VPS29-212ENST00000621131 BDH2Q9BUT1 245 aa7.84□□□□□ -1.15
VPS29-212ENST00000621131 SPATA9Q9BWV2 254 aa7.84□□□□□ -1.15
VPS29-212ENST00000621131 CCDC113Q9H0I3 377 aa7.84□□□□□ -1.15
VPS29-212ENST00000621131 KRIT1O00522 736 aa7.83□□□□□ -1.16
VPS29-212ENST00000621131 PDPK1O15530 556 aa7.83□□□□□ -1.16
VPS29-212ENST00000621131 MAFKO60675 156 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms