RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 ZNF263O14978 683 aa11.91□□□□□ -0.5
UPF3A-212ENST00000619079 CHRNA5P30532 468 aa11.91□□□□□ -0.5
UPF3A-212ENST00000619079 PPP1R2P41236 205 aa11.91□□□□□ -0.5
UPF3A-212ENST00000619079 GUCY2FP51841 1108 aa11.91□□□□□ -0.5
UPF3A-212ENST00000619079 ELF3P78545 371 aaPredicted RBP11.91□□□□□ -0.5
UPF3A-212ENST00000619079 PTGDRQ13258 359 aa11.91□□□□□ -0.5
UPF3A-212ENST00000619079 CUL1Q13616 776 aa11.91□□□□□ -0.5
UPF3A-212ENST00000619079 AGBL2Q5U5Z8 902 aa11.91□□□□□ -0.5
UPF3A-212ENST00000619079 MFSD6Q6ZSS7 791 aa11.91□□□□□ -0.5
UPF3A-212ENST00000619079 ANKS4BQ8N8V4 417 aa11.91□□□□□ -0.5
UPF3A-212ENST00000619079 SMCR8Q8TEV9 937 aaPredicted RBP11.91□□□□□ -0.5
UPF3A-212ENST00000619079 ZNF483Q8TF39 744 aaPredicted RBP11.91□□□□□ -0.5
UPF3A-212ENST00000619079 CCT6BQ92526 530 aa11.91□□□□□ -0.5
UPF3A-212ENST00000619079 TLR10Q9BXR5 811 aa11.91□□□□□ -0.5
UPF3A-212ENST00000619079 NAPBQ9H115 298 aa11.91□□□□□ -0.5
UPF3A-212ENST00000619079 C10orf71Q711Q0 1435 aa11.91□□□□□ -0.5
UPF3A-212ENST00000619079 COL24A1Q17RW2 1714 aa11.91□□□□□ -0.5
UPF3A-212ENST00000619079 RTL9Q8NET4 1388 aa11.91□□□□□ -0.5
UPF3A-212ENST00000619079 TRIM49BA6NDI0 452 aa11.91□□□□□ -0.5
UPF3A-212ENST00000619079 CFAP73A6NFT4 308 aa11.91□□□□□ -0.5
UPF3A-212ENST00000619079 AKR1B10O60218 316 aa11.91□□□□□ -0.5
UPF3A-212ENST00000619079 CXCR5P32302 372 aa11.91□□□□□ -0.5
UPF3A-212ENST00000619079 CCNHP51946 323 aaPredicted RBP11.91□□□□□ -0.5
UPF3A-212ENST00000619079 PPP2R2AP63151 447 aa11.91□□□□□ -0.5
UPF3A-212ENST00000619079 MRPS25P82663 173 aaKnown RBP11.91□□□□□ -0.5
UPF3A-212ENST00000619079 MTMR3Q13615 1198 aa11.91□□□□□ -0.5
UPF3A-212ENST00000619079 CSGALNACT2Q8N6G5 542 aa11.91□□□□□ -0.5
UPF3A-212ENST00000619079 RNF217Q8TC41 542 aa11.91□□□□□ -0.5
UPF3A-212ENST00000619079 MTRQ99707 1265 aa11.91□□□□□ -0.5
UPF3A-212ENST00000619079 UBAC1Q9BSL1 405 aa11.91□□□□□ -0.5
UPF3A-212ENST00000619079 PUS3Q9BZE2 481 aaKnown RBP11.91□□□□□ -0.5
UPF3A-212ENST00000619079 TAF1DQ9H5J8 278 aaPredicted RBP11.91□□□□□ -0.5
UPF3A-212ENST00000619079 CNOT10Q9H9A5 744 aaKnown RBP11.91□□□□□ -0.5
UPF3A-212ENST00000619079 LUC7LQ9NQ29 371 aaKnown RBP11.91□□□□□ -0.5
UPF3A-212ENST00000619079 MAPK8IP1Q9UQF2 711 aa11.91□□□□□ -0.5
UPF3A-212ENST00000619079 TIAM2Q8IVF5 1701 aa11.91□□□□□ -0.5
UPF3A-212ENST00000619079 FRMD3A2A2Y4 597 aa11.9□□□□□ -0.5
UPF3A-212ENST00000619079 PPP1R12BO60237 982 aaPredicted RBP11.9□□□□□ -0.5
UPF3A-212ENST00000619079 RPSAP08865 295 aaKnown RBP11.9□□□□□ -0.5
UPF3A-212ENST00000619079 LONP1P36776 959 aaKnown RBP11.9□□□□□ -0.5
UPF3A-212ENST00000619079 ADCY2Q08462 1091 aa11.9□□□□□ -0.5
UPF3A-212ENST00000619079 SLC10A5Q5PT55 438 aa11.9□□□□□ -0.5
UPF3A-212ENST00000619079 TTI2Q6NXR4 508 aa11.9□□□□□ -0.5
UPF3A-212ENST00000619079 C3orf67Q6ZVT6 689 aa11.9□□□□□ -0.5
UPF3A-212ENST00000619079 CPLX4Q7Z7G2 160 aa11.9□□□□□ -0.5
UPF3A-212ENST00000619079 ZSCAN29Q8IWY8 852 aaPredicted RBP11.9□□□□□ -0.5
UPF3A-212ENST00000619079 MYH13Q9UKX3 1938 aa11.9□□□□□ -0.5
UPF3A-212ENST00000619079 LIN7AO14910 233 aaPredicted RBP11.9□□□□□ -0.5
UPF3A-212ENST00000619079 STAT6P42226 847 aa11.9□□□□□ -0.5
UPF3A-212ENST00000619079 MAGEA1P43355 309 aa11.9□□□□□ -0.5
UPF3A-212ENST00000619079 CTSWP56202 376 aa11.9□□□□□ -0.5
UPF3A-212ENST00000619079 TGFB2P61812 414 aa11.9□□□□□ -0.5
UPF3A-212ENST00000619079 ZNF174Q15697 407 aa11.9□□□□□ -0.5
UPF3A-212ENST00000619079 CCDC152Q4G0S7 254 aa11.9□□□□□ -0.5
UPF3A-212ENST00000619079 ODF2Q5BJF6 829 aa11.9□□□□□ -0.5
UPF3A-212ENST00000619079 ARL6IP4Q66PJ3 421 aaKnown RBP11.9□□□□□ -0.5
UPF3A-212ENST00000619079 KRT26Q7Z3Y9 468 aa11.9□□□□□ -0.5
UPF3A-212ENST00000619079 ZNF654Q8IZM8 581 aa11.9□□□□□ -0.5
UPF3A-212ENST00000619079 CCDC82Q8N4S0 544 aa11.9□□□□□ -0.5
UPF3A-212ENST00000619079 NLGN2Q8NFZ4 835 aa11.9□□□□□ -0.5
UPF3A-212ENST00000619079 NSMCE1Q8WV22 266 aa11.9□□□□□ -0.5
UPF3A-212ENST00000619079 CASKIN2Q8WXE0 1202 aa11.9□□□□□ -0.5
UPF3A-212ENST00000619079 SPDL1Q96EA4 605 aa11.9□□□□□ -0.5
UPF3A-212ENST00000619079 SAAL1Q96ER3 474 aa11.9□□□□□ -0.5
UPF3A-212ENST00000619079 SPAG5Q96R06 1193 aa11.9□□□□□ -0.5
UPF3A-212ENST00000619079 STRBPQ96SI9 672 aaKnown RBP11.9□□□□□ -0.5
UPF3A-212ENST00000619079 PSMB7Q99436 277 aa11.9□□□□□ -0.5
UPF3A-212ENST00000619079 SYT17Q9BSW7 474 aa11.9□□□□□ -0.5
UPF3A-212ENST00000619079 POLD4Q9HCU8 107 aa11.9□□□□□ -0.5
UPF3A-212ENST00000619079 BAIAP2L1Q9UHR4 511 aa11.9□□□□□ -0.5
UPF3A-212ENST00000619079 C15orf41Q9Y2V0 281 aa11.9□□□□□ -0.5
UPF3A-212ENST00000619079 ZNF532Q9HCE3 1301 aa11.89□□□□□ -0.51
UPF3A-212ENST00000619079 ANKRD33BA6NCL7 494 aa11.89□□□□□ -0.51
UPF3A-212ENST00000619079 FAM205CA6NFA0 338 aa11.89□□□□□ -0.51
UPF3A-212ENST00000619079 RASSF10A6NK89 507 aa11.89□□□□□ -0.51
UPF3A-212ENST00000619079 PPIP5K2O43314 1243 aa11.89□□□□□ -0.51
UPF3A-212ENST00000619079 ECM2O94769 699 aaPredicted RBP11.89□□□□□ -0.51
UPF3A-212ENST00000619079 DPEP1P16444 411 aa11.89□□□□□ -0.51
UPF3A-212ENST00000619079 MTIF2P46199 727 aaKnown RBP11.89□□□□□ -0.51
UPF3A-212ENST00000619079 PPP1R7Q15435 360 aa11.89□□□□□ -0.51
UPF3A-212ENST00000619079 TYW1BQ6NUM6 668 aa11.89□□□□□ -0.51
UPF3A-212ENST00000619079 TCP11Q8WWU5 503 aa11.89□□□□□ -0.51
UPF3A-212ENST00000619079 ISCUQ9H1K1 167 aa11.89□□□□□ -0.51
UPF3A-212ENST00000619079 RNF41Q9H4P4 317 aaPredicted RBP11.89□□□□□ -0.51
UPF3A-212ENST00000619079 SMARCAL1Q9NZC9 954 aa11.89□□□□□ -0.51
UPF3A-212ENST00000619079 ESYT3A0FGR9 886 aa11.89□□□□□ -0.51
UPF3A-212ENST00000619079 ORC4O43929 436 aa11.89□□□□□ -0.51
UPF3A-212ENST00000619079 RHOBTB3O94955 611 aa11.89□□□□□ -0.51
UPF3A-212ENST00000619079 CTNNA1P35221 906 aaKnown RBP11.89□□□□□ -0.51
UPF3A-212ENST00000619079 RBBP5Q15291 538 aaKnown RBP11.89□□□□□ -0.51
UPF3A-212ENST00000619079 QPCTQ16769 361 aa11.89□□□□□ -0.51
UPF3A-212ENST00000619079 KLHDC7AQ5VTJ3 777 aa11.89□□□□□ -0.51
UPF3A-212ENST00000619079 HIBCHQ6NVY1 386 aaPredicted RBP11.89□□□□□ -0.51
UPF3A-212ENST00000619079 CCDC197Q8NCU1 140 aa11.89□□□□□ -0.51
UPF3A-212ENST00000619079 GIMAP8Q8ND71 665 aaPredicted RBP11.89□□□□□ -0.51
UPF3A-212ENST00000619079 NUP133Q8WUM0 1156 aa11.89□□□□□ -0.51
UPF3A-212ENST00000619079 LMBR1Q8WVP7 490 aa11.89□□□□□ -0.51
UPF3A-212ENST00000619079 NOC4LQ9BVI4 516 aaKnown RBP11.89□□□□□ -0.51
UPF3A-212ENST00000619079 EHD2Q9NZN4 543 aa11.89□□□□□ -0.51
UPF3A-212ENST00000619079 ARHGAP20Q9P2F6 1191 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms