RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 GAS2L1Q99501 681 aaPredicted RBP18.38■□□□□ 0.53
BRCA1-228ENST00000618469 PBX4Q9BYU1 374 aa18.38■□□□□ 0.53
BRCA1-228ENST00000618469 V9GY48 417 aaPredicted RBP18.38■□□□□ 0.53
BRCA1-228ENST00000618469 MROH7Q68CQ1 1323 aa18.38■□□□□ 0.53
BRCA1-228ENST00000618469 DCDC2CA8MYV0 355 aa18.37■□□□□ 0.53
BRCA1-228ENST00000618469 ARVCFO00192 962 aa18.37■□□□□ 0.53
BRCA1-228ENST00000618469 RGS20O76081 388 aa18.37■□□□□ 0.53
BRCA1-228ENST00000618469 PSMC6P62333 389 aa18.37■□□□□ 0.53
BRCA1-228ENST00000618469 TYW1BQ6NUM6 668 aa18.37■□□□□ 0.53
BRCA1-228ENST00000618469 PPP1R18Q6NYC8 613 aa18.37■□□□□ 0.53
BRCA1-228ENST00000618469 ANKRD33Q7Z3H0 272 aa18.37■□□□□ 0.53
BRCA1-228ENST00000618469 VSIG10LQ86VR7 867 aa18.37■□□□□ 0.53
BRCA1-228ENST00000618469 NECAB3Q96P71 396 aaPredicted RBP18.37■□□□□ 0.53
BRCA1-228ENST00000618469 POLR3EQ9NVU0 708 aa18.37■□□□□ 0.53
BRCA1-228ENST00000618469 hCG_1984214I3L0E3 225 aa18.36■□□□□ 0.53
BRCA1-228ENST00000618469 STXBP3O00186 592 aa18.36■□□□□ 0.53
BRCA1-228ENST00000618469 TIMP1P01033 207 aa18.36■□□□□ 0.53
BRCA1-228ENST00000618469 CCT2P78371 535 aaKnown RBP18.36■□□□□ 0.53
BRCA1-228ENST00000618469 PURAQ00577 322 aaKnown RBP18.36■□□□□ 0.53
BRCA1-228ENST00000618469 ARHGAP1Q07960 439 aa18.36■□□□□ 0.53
BRCA1-228ENST00000618469 ADGRE1Q14246 886 aa18.36■□□□□ 0.53
BRCA1-228ENST00000618469 ZNF713Q8N859 430 aaPredicted RBP18.36■□□□□ 0.53
BRCA1-228ENST00000618469 TOX2Q96NM4 488 aa18.36■□□□□ 0.53
BRCA1-228ENST00000618469 ASB2Q96Q27 587 aa18.36■□□□□ 0.53
BRCA1-228ENST00000618469 PPP1R12CQ9BZL4 782 aa18.36■□□□□ 0.53
BRCA1-228ENST00000618469 NCOA5Q9HCD5 579 aaKnown RBP18.36■□□□□ 0.53
BRCA1-228ENST00000618469 PDRG1Q9NUG6 133 aa18.36■□□□□ 0.53
BRCA1-228ENST00000618469 DDX41Q9UJV9 622 aaKnown RBP18.36■□□□□ 0.53
BRCA1-228ENST00000618469 A6NJR5 290 aa18.35■□□□□ 0.53
BRCA1-228ENST00000618469 SPDYE3A6NKU9 549 aa18.35■□□□□ 0.53
BRCA1-228ENST00000618469 SORBS3O60504 671 aa18.35■□□□□ 0.53
BRCA1-228ENST00000618469 EIF5BO60841 1220 aaKnown RBP18.35■□□□□ 0.53
BRCA1-228ENST00000618469 PPFIA3O75145 1194 aa18.35■□□□□ 0.53
BRCA1-228ENST00000618469 MMP3P08254 477 aa18.35■□□□□ 0.53
BRCA1-228ENST00000618469 CSF2RAP15509 400 aa18.35■□□□□ 0.53
BRCA1-228ENST00000618469 UBA1P22314 1058 aaKnown RBP18.35■□□□□ 0.53
BRCA1-228ENST00000618469 PDIA3P30101 505 aaKnown RBP18.35■□□□□ 0.53
BRCA1-228ENST00000618469 ADCY7P51828 1080 aa18.35■□□□□ 0.53
BRCA1-228ENST00000618469 EVCP57679 992 aa18.35■□□□□ 0.53
BRCA1-228ENST00000618469 ANAPC15P60006 121 aa18.35■□□□□ 0.53
BRCA1-228ENST00000618469 MRPS9P82933 396 aaKnown RBP18.35■□□□□ 0.53
BRCA1-228ENST00000618469 ITGA7Q13683 1181 aa18.35■□□□□ 0.53
BRCA1-228ENST00000618469 GNPTABQ3T906 1256 aa18.35■□□□□ 0.53
BRCA1-228ENST00000618469 TMEM240Q5SV17 173 aa18.35■□□□□ 0.53
BRCA1-228ENST00000618469 FAM126BQ8IXS8 530 aa18.35■□□□□ 0.53
BRCA1-228ENST00000618469 AFG1LQ8WV93 481 aa18.35■□□□□ 0.53
BRCA1-228ENST00000618469 PHKBQ93100 1093 aa18.35■□□□□ 0.53
BRCA1-228ENST00000618469 LARP6Q9BRS8 491 aaKnown RBP18.35■□□□□ 0.53
BRCA1-228ENST00000618469 MTG1Q9BT17 334 aaPredicted RBP18.35■□□□□ 0.53
BRCA1-228ENST00000618469 BARHL2Q9NY43 387 aa18.35■□□□□ 0.53
BRCA1-228ENST00000618469 THEGQ9P2T0 379 aa18.35■□□□□ 0.53
BRCA1-228ENST00000618469 SCN10AQ9Y5Y9 1956 aa18.35■□□□□ 0.53
BRCA1-228ENST00000618469 MYH7BA7E2Y1 1941 aa18.34■□□□□ 0.53
BRCA1-228ENST00000618469 TLR3O15455 904 aaKnown RBP18.34■□□□□ 0.53
BRCA1-228ENST00000618469 SCG2P13521 617 aa18.34■□□□□ 0.53
BRCA1-228ENST00000618469 CDK7P50613 346 aa18.34■□□□□ 0.53
BRCA1-228ENST00000618469 PFKFB3Q16875 520 aaPredicted RBP18.34■□□□□ 0.53
BRCA1-228ENST00000618469 PCNX4Q63HM2 1172 aa18.34■□□□□ 0.53
BRCA1-228ENST00000618469 KCNV1Q6PIU1 500 aa18.34■□□□□ 0.53
BRCA1-228ENST00000618469 ZNF365Q70YC5 407 aa18.34■□□□□ 0.53
BRCA1-228ENST00000618469 UHRF1Q96T88 793 aaPredicted RBP18.34■□□□□ 0.53
BRCA1-228ENST00000618469 TBX21Q9UL17 535 aa18.34■□□□□ 0.53
BRCA1-228ENST00000618469 DOCK5Q9H7D0 1870 aa18.34■□□□□ 0.53
BRCA1-228ENST00000618469 GRIN2DO15399 1336 aa18.33■□□□□ 0.53
BRCA1-228ENST00000618469 STAM2O75886 525 aa18.33■□□□□ 0.52
BRCA1-228ENST00000618469 SEC24BO95487 1268 aa18.33■□□□□ 0.52
BRCA1-228ENST00000618469 GGPS1O95749 300 aa18.33■□□□□ 0.52
BRCA1-228ENST00000618469 AKAP17AQ02040 695 aaKnown RBP18.33■□□□□ 0.52
BRCA1-228ENST00000618469 MFSD5Q6N075 450 aa18.33■□□□□ 0.52
BRCA1-228ENST00000618469 DHX37Q8IY37 1157 aaKnown RBP18.33■□□□□ 0.52
BRCA1-228ENST00000618469 MICALL1Q8N3F8 863 aa18.33■□□□□ 0.52
BRCA1-228ENST00000618469 ATXN2LQ8WWM7 1075 aaKnown RBP18.33■□□□□ 0.52
BRCA1-228ENST00000618469 INPP4AQ96PE3 977 aaPredicted RBP18.33■□□□□ 0.52
BRCA1-228ENST00000618469 SLC26A6Q9BXS9 759 aa18.33■□□□□ 0.52
BRCA1-228ENST00000618469 NKX2-4Q9H2Z4 354 aa18.33■□□□□ 0.52
BRCA1-228ENST00000618469 EHMT1Q9H9B1 1298 aa18.33■□□□□ 0.52
BRCA1-228ENST00000618469 RIC8AQ9NPQ8 531 aa18.33■□□□□ 0.52
BRCA1-228ENST00000618469 RTEL1Q9NZ71 1219 aa18.33■□□□□ 0.52
BRCA1-228ENST00000618469 KPNA6O60684 536 aa18.32■□□□□ 0.52
BRCA1-228ENST00000618469 CHMP4BP1P59074 171 aa18.32■□□□□ 0.52
BRCA1-228ENST00000618469 STK3Q13188 491 aa18.32■□□□□ 0.52
BRCA1-228ENST00000618469 NTRK3Q16288 839 aa18.32■□□□□ 0.52
BRCA1-228ENST00000618469 SLC43A3Q8NBI5 491 aa18.32■□□□□ 0.52
BRCA1-228ENST00000618469 EMID1Q96A84 441 aaPredicted RBP18.32■□□□□ 0.52
BRCA1-228ENST00000618469 PGBD1Q96JS3 809 aa18.32■□□□□ 0.52
BRCA1-228ENST00000618469 RNF26Q9BY78 433 aaPredicted RBP18.32■□□□□ 0.52
BRCA1-228ENST00000618469 CXXC1Q9P0U4 656 aaPredicted RBP18.32■□□□□ 0.52
BRCA1-228ENST00000618469 PCDHA6Q9UN73 950 aa18.32■□□□□ 0.52
BRCA1-228ENST00000618469 PCDHA8Q9Y5H6 950 aa18.32■□□□□ 0.52
BRCA1-228ENST00000618469 SMCO2A6NFE2 343 aa18.31■□□□□ 0.52
BRCA1-228ENST00000618469 CPLX1O14810 134 aa18.31■□□□□ 0.52
BRCA1-228ENST00000618469 PRPF3O43395 683 aaKnown RBP18.31■□□□□ 0.52
BRCA1-228ENST00000618469 FIBPO43427 364 aa18.31■□□□□ 0.52
BRCA1-228ENST00000618469 IFNAR1P17181 557 aa18.31■□□□□ 0.52
BRCA1-228ENST00000618469 CYP2C18P33260 490 aa18.31■□□□□ 0.52
BRCA1-228ENST00000618469 MRPS5P82675 430 aaKnown RBP18.31■□□□□ 0.52
BRCA1-228ENST00000618469 SEMA3FQ13275 785 aa18.31■□□□□ 0.52
BRCA1-228ENST00000618469 PPIGQ13427 754 aaKnown RBP eCLIP18.31■□□□□ 0.524e-6■■□□□ 13.5
BRCA1-228ENST00000618469 LAMC2Q13753 1193 aa18.31■□□□□ 0.52
BRCA1-228ENST00000618469 PKN1Q16512 942 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms