RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 AP1M1Q9BXS5 423 aa20.24■□□□□ 0.83
UPF1-210ENST00000600689 RTCBQ9Y3I0 505 aaKnown RBP20.24■□□□□ 0.83
UPF1-210ENST00000600689 BTAF1O14981 1849 aa20.24■□□□□ 0.83
UPF1-210ENST00000600689 KIRREL3Q8IZU9 778 aa20.23■□□□□ 0.83
UPF1-210ENST00000600689 CNPY4Q8N129 248 aa20.23■□□□□ 0.83
UPF1-210ENST00000600689 GJA10Q969M2 543 aa20.23■□□□□ 0.83
UPF1-210ENST00000600689 PAK2Q13177 524 aa20.23■□□□□ 0.83
UPF1-210ENST00000600689 PTGISQ16647 500 aa20.23■□□□□ 0.83
UPF1-210ENST00000600689 MYCBPAPQ8TBZ2 947 aa20.23■□□□□ 0.83
UPF1-210ENST00000600689 EPN3Q9H201 632 aa20.23■□□□□ 0.83
UPF1-210ENST00000600689 SCN7AQ01118 1682 aa20.23■□□□□ 0.83
UPF1-210ENST00000600689 RAD51CO43502 376 aa20.23■□□□□ 0.83
UPF1-210ENST00000600689 KLRC1P26715 233 aa20.23■□□□□ 0.83
UPF1-210ENST00000600689 POLR2FP61218 127 aaKnown RBP20.23■□□□□ 0.83
UPF1-210ENST00000600689 RAPGEF1Q13905 1077 aa20.23■□□□□ 0.83
UPF1-210ENST00000600689 TPTE2Q6XPS3 522 aa20.23■□□□□ 0.83
UPF1-210ENST00000600689 PRPF38AQ8NAV1 312 aaKnown RBP20.23■□□□□ 0.83
UPF1-210ENST00000600689 TBC1D5Q92609 795 aa20.23■□□□□ 0.83
UPF1-210ENST00000600689 NYXQ9GZU5 481 aa20.23■□□□□ 0.83
UPF1-210ENST00000600689 GOLGA6L7A0A1B0GV03 622 aa20.22■□□□□ 0.83
UPF1-210ENST00000600689 TM4SF1P30408 202 aa20.22■□□□□ 0.83
UPF1-210ENST00000600689 HIBADHP31937 336 aaKnown RBP20.22■□□□□ 0.83
UPF1-210ENST00000600689 FNTAP49354 379 aa20.22■□□□□ 0.83
UPF1-210ENST00000600689 SKOR1P84550 965 aa20.22■□□□□ 0.83
UPF1-210ENST00000600689 SPRED3Q2MJR0 410 aa20.22■□□□□ 0.83
UPF1-210ENST00000600689 NELFCDQ8IXH7 590 aa20.22■□□□□ 0.83
UPF1-210ENST00000600689 TRIM31Q9BZY9 425 aa20.22■□□□□ 0.83
UPF1-210ENST00000600689 ADAMTS1Q9UHI8 967 aa20.22■□□□□ 0.83
UPF1-210ENST00000600689 EPB41L3Q9Y2J2 1087 aaPredicted RBP20.22■□□□□ 0.83
UPF1-210ENST00000600689 GOLGA6L10A6NI86 522 aa20.22■□□□□ 0.83
UPF1-210ENST00000600689 KIF5BP33176 963 aa20.22■□□□□ 0.83
UPF1-210ENST00000600689 CACNB1Q02641 598 aaPredicted RBP20.22■□□□□ 0.83
UPF1-210ENST00000600689 SWT1Q5T5J6 900 aaKnown RBP20.22■□□□□ 0.83
UPF1-210ENST00000600689 GIMAP7Q8NHV1 300 aa20.22■□□□□ 0.83
UPF1-210ENST00000600689 UBLCP1Q8WVY7 318 aaPredicted RBP20.22■□□□□ 0.83
UPF1-210ENST00000600689 ERGIC2Q96RQ1 377 aa20.22■□□□□ 0.83
UPF1-210ENST00000600689 ANAPC4Q9UJX5 808 aa20.22■□□□□ 0.83
UPF1-210ENST00000600689 KCNK3O14649 394 aa20.21■□□□□ 0.83
UPF1-210ENST00000600689 PDHBP11177 359 aa20.21■□□□□ 0.83
UPF1-210ENST00000600689 NAPAP54920 295 aa20.21■□□□□ 0.83
UPF1-210ENST00000600689 CCDC13Q8IYE1 715 aa20.21■□□□□ 0.83
UPF1-210ENST00000600689 IQCKQ8N0W5 287 aa20.21■□□□□ 0.83
UPF1-210ENST00000600689 PIK3R5Q8WYR1 880 aa20.21■□□□□ 0.83
UPF1-210ENST00000600689 GPR101Q96P66 508 aaPredicted RBP20.21■□□□□ 0.83
UPF1-210ENST00000600689 DCP1AQ9NPI6 582 aaPredicted RBP20.21■□□□□ 0.83
UPF1-210ENST00000600689 BIN2Q9UBW5 565 aaPredicted RBP20.21■□□□□ 0.83
UPF1-210ENST00000600689 SIK3Q9Y2K2 1263 aa20.21■□□□□ 0.83
UPF1-210ENST00000600689 CCDC40Q4G0X9 1142 aa20.21■□□□□ 0.83
UPF1-210ENST00000600689 RC3H1Q5TC82 1133 aaKnown RBP20.21■□□□□ 0.83
UPF1-210ENST00000600689 AEBP2Q6ZN18 517 aaPredicted RBP20.21■□□□□ 0.83
UPF1-210ENST00000600689 MTA3Q9BTC8 594 aa20.21■□□□□ 0.83
UPF1-210ENST00000600689 ZHX3Q9H4I2 956 aa20.21■□□□□ 0.83
UPF1-210ENST00000600689 MDH1P40925 334 aaKnown RBP20.21■□□□□ 0.83
UPF1-210ENST00000600689 KIAA0753Q2KHM9 967 aa20.21■□□□□ 0.83
UPF1-210ENST00000600689 RCSD1Q6JBY9 416 aa20.21■□□□□ 0.83
UPF1-210ENST00000600689 CDK5RAP3Q96JB5 506 aa20.21■□□□□ 0.83
UPF1-210ENST00000600689 CDR1P51861 262 aa20.2■□□□□ 0.82
UPF1-210ENST00000600689 SLC35G1Q2M3R5 365 aa20.2■□□□□ 0.82
UPF1-210ENST00000600689 ATP6V1G3Q96LB4 118 aa20.2■□□□□ 0.82
UPF1-210ENST00000600689 MKNK2Q9HBH9 465 aa20.2■□□□□ 0.82
UPF1-210ENST00000600689 OR52Z1P0C646 297 aa20.2■□□□□ 0.82
UPF1-210ENST00000600689 CHADLQ6NUI6 762 aa20.2■□□□□ 0.82
UPF1-210ENST00000600689 CCDC121Q6ZUS5 278 aa20.2■□□□□ 0.82
UPF1-210ENST00000600689 MICALCLQ6ZW33 695 aa20.2■□□□□ 0.82
UPF1-210ENST00000600689 CAVIN3Q969G5 261 aa20.2■□□□□ 0.82
UPF1-210ENST00000600689 LSM14BQ9BX40 385 aaKnown RBP20.2■□□□□ 0.82
UPF1-210ENST00000600689 KLC4Q9NSK0 619 aa20.2■□□□□ 0.82
UPF1-210ENST00000600689 TMEM260Q9NX78 707 aa20.2■□□□□ 0.82
UPF1-210ENST00000600689 MYMKA6NI61 221 aa20.19■□□□□ 0.82
UPF1-210ENST00000600689 TMCO5BA8MYB1 307 aa20.19■□□□□ 0.82
UPF1-210ENST00000600689 TULP1O00294 542 aaPredicted RBP20.19■□□□□ 0.82
UPF1-210ENST00000600689 CYTH3O43739 400 aa20.19■□□□□ 0.82
UPF1-210ENST00000600689 CEP104O60308 925 aa20.19■□□□□ 0.82
UPF1-210ENST00000600689 QPCTQ16769 361 aa20.19■□□□□ 0.82
UPF1-210ENST00000600689 ZNF662Q6ZS27 426 aa20.19■□□□□ 0.82
UPF1-210ENST00000600689 FAM133AQ8N9E0 248 aa20.19■□□□□ 0.82
UPF1-210ENST00000600689 ZNF831Q5JPB2 1677 aa20.19■□□□□ 0.82
UPF1-210ENST00000600689 POTEMA6NI47 508 aa20.19■□□□□ 0.82
UPF1-210ENST00000600689 SMIM23A6NLE4 172 aa20.19■□□□□ 0.82
UPF1-210ENST00000600689 TRAF5O00463 557 aa20.19■□□□□ 0.82
UPF1-210ENST00000600689 NFIXQ14938 502 aa20.19■□□□□ 0.82
UPF1-210ENST00000600689 KDM7AQ6ZMT4 941 aa20.19■□□□□ 0.82
UPF1-210ENST00000600689 HAUS2Q9NVX0 235 aa20.19■□□□□ 0.82
UPF1-210ENST00000600689 EPB41P11171 864 aaKnown RBP20.18■□□□□ 0.82
UPF1-210ENST00000600689 CNNM4Q6P4Q7 775 aa20.18■□□□□ 0.82
UPF1-210ENST00000600689 ADAT2Q7Z6V5 191 aaKnown RBP20.18■□□□□ 0.82
UPF1-210ENST00000600689 ZKSCAN4Q969J2 545 aaPredicted RBP20.18■□□□□ 0.82
UPF1-210ENST00000600689 CCSER1Q9C0I3 900 aa20.18■□□□□ 0.82
UPF1-210ENST00000600689 SAP30BPQ9UHR5 308 aaKnown RBP20.18■□□□□ 0.82
UPF1-210ENST00000600689 CTNNA1P35221 906 aaKnown RBP20.18■□□□□ 0.82
UPF1-210ENST00000600689 RFC4P35249 363 aa20.18■□□□□ 0.82
UPF1-210ENST00000600689 MAN2A1Q16706 1144 aa20.18■□□□□ 0.82
UPF1-210ENST00000600689 FAM196AQ6ZSG2 479 aa20.18■□□□□ 0.82
UPF1-210ENST00000600689 BRIP1Q9BX63 1249 aa20.18■□□□□ 0.82
UPF1-210ENST00000600689 DCDC2CA8MYV0 355 aa20.18■□□□□ 0.82
UPF1-210ENST00000600689 CCDC172P0C7W6 258 aa20.18■□□□□ 0.82
UPF1-210ENST00000600689 PDXDC1Q6P996 788 aa20.18■□□□□ 0.82
UPF1-210ENST00000600689 SV2BQ7L1I2 683 aa20.18■□□□□ 0.82
UPF1-210ENST00000600689 BAP1Q92560 729 aa20.18■□□□□ 0.82
UPF1-210ENST00000600689 CYFIP2Q96F07 1278 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms