RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 TRAF1Q13077 416 aa20.35■□□□□ 0.85
SHKBP1-223ENST00000600552 CELF3Q5SZQ8 465 aaKnown RBP20.35■□□□□ 0.85
SHKBP1-223ENST00000600552 MYSM1Q5VVJ2 828 aa20.35■□□□□ 0.85
SHKBP1-223ENST00000600552 NFXL1Q6ZNB6 911 aa20.35■□□□□ 0.85
SHKBP1-223ENST00000600552 CTAGE1Q96RT6 745 aa20.35■□□□□ 0.85
SHKBP1-223ENST00000600552 RTEL1Q9NZ71 1219 aa20.35■□□□□ 0.85
SHKBP1-223ENST00000600552 RBM8AQ9Y5S9 174 aaKnown RBP20.35■□□□□ 0.85
SHKBP1-223ENST00000600552 TANC1Q9C0D5 1861 aa20.35■□□□□ 0.85
SHKBP1-223ENST00000600552 TLL1O43897 1013 aa20.34■□□□□ 0.85
SHKBP1-223ENST00000600552 CKBP12277 381 aa20.34■□□□□ 0.85
SHKBP1-223ENST00000600552 ANTXR2P58335 489 aa20.34■□□□□ 0.85
SHKBP1-223ENST00000600552 HSDL1Q3SXM5 330 aa20.34■□□□□ 0.85
SHKBP1-223ENST00000600552 FAM117BQ6P1L5 589 aa20.34■□□□□ 0.85
SHKBP1-223ENST00000600552 KCNV1Q6PIU1 500 aa20.34■□□□□ 0.85
SHKBP1-223ENST00000600552 SESTD1Q86VW0 696 aa20.34■□□□□ 0.85
SHKBP1-223ENST00000600552 IL27Q8NEV9 243 aa20.34■□□□□ 0.85
SHKBP1-223ENST00000600552 EMID1Q96A84 441 aaPredicted RBP20.34■□□□□ 0.85
SHKBP1-223ENST00000600552 BCAS3Q9H6U6 928 aa20.34■□□□□ 0.85
SHKBP1-223ENST00000600552 MAP3K20Q9NYL2 800 aaKnown RBP20.34■□□□□ 0.85
SHKBP1-223ENST00000600552 UBA1P22314 1058 aaKnown RBP20.33■□□□□ 0.85
SHKBP1-223ENST00000600552 TROAPQ12815 778 aa20.33■□□□□ 0.85
SHKBP1-223ENST00000600552 CASC1Q6TDU7 716 aa20.33■□□□□ 0.85
SHKBP1-223ENST00000600552 RAB11FIP4Q86YS3 637 aa20.33■□□□□ 0.85
SHKBP1-223ENST00000600552 CTCFLQ8NI51 663 aaPredicted RBP20.33■□□□□ 0.85
SHKBP1-223ENST00000600552 PHOSPHO2Q8TCD6 241 aa20.33■□□□□ 0.85
SHKBP1-223ENST00000600552 TSPYL2Q9H2G4 693 aaPredicted RBP20.33■□□□□ 0.85
SHKBP1-223ENST00000600552 EPOPA6NHQ4 379 aa20.32■□□□□ 0.84
SHKBP1-223ENST00000600552 GTPBP6O43824 516 aaPredicted RBP20.32■□□□□ 0.84
SHKBP1-223ENST00000600552 PPFIA4O75335 1185 aa20.32■□□□□ 0.84
SHKBP1-223ENST00000600552 ARHGEF15O94989 841 aa20.32■□□□□ 0.84
SHKBP1-223ENST00000600552 F2P00734 622 aa20.32■□□□□ 0.84
SHKBP1-223ENST00000600552 SP4Q02446 784 aa20.32■□□□□ 0.84
SHKBP1-223ENST00000600552 GHRHRQ02643 423 aa20.32■□□□□ 0.84
SHKBP1-223ENST00000600552 GPNMBQ14956 572 aa20.32■□□□□ 0.84
SHKBP1-223ENST00000600552 KRT40Q6A162 431 aa20.32■□□□□ 0.84
SHKBP1-223ENST00000600552 MB21D2Q8IYB1 491 aaPredicted RBP20.32■□□□□ 0.84
SHKBP1-223ENST00000600552 SMARCC2Q8TAQ2 1214 aa20.32■□□□□ 0.84
SHKBP1-223ENST00000600552 IGDCC4Q8TDY8 1250 aa20.32■□□□□ 0.84
SHKBP1-223ENST00000600552 MAP4K1Q92918 833 aa20.32■□□□□ 0.84
SHKBP1-223ENST00000600552 WNT8BQ93098 351 aa20.32■□□□□ 0.84
SHKBP1-223ENST00000600552 HAS3O00219 553 aa20.31■□□□□ 0.84
SHKBP1-223ENST00000600552 NOP56O00567 594 aaKnown RBP20.31■□□□□ 0.84
SHKBP1-223ENST00000600552 PRC1O43663 620 aa20.31■□□□□ 0.84
SHKBP1-223ENST00000600552 NBNO60934 754 aa20.31■□□□□ 0.84
SHKBP1-223ENST00000600552 BAIAP3O94812 1187 aa20.31■□□□□ 0.84
SHKBP1-223ENST00000600552 RXRAP19793 462 aa20.31■□□□□ 0.84
SHKBP1-223ENST00000600552 THPOP40225 353 aa20.31■□□□□ 0.84
SHKBP1-223ENST00000600552 WDR5P61964 334 aaKnown RBP20.31■□□□□ 0.84
SHKBP1-223ENST00000600552 DEFB103AP81534 67 aa20.31■□□□□ 0.84
SHKBP1-223ENST00000600552 MRPS5P82675 430 aaKnown RBP20.31■□□□□ 0.84
SHKBP1-223ENST00000600552 TAP1Q03518 808 aa20.31■□□□□ 0.84
SHKBP1-223ENST00000600552 PTK7Q13308 1070 aa20.31■□□□□ 0.84
SHKBP1-223ENST00000600552 HIC1Q14526 733 aa20.31■□□□□ 0.84
SHKBP1-223ENST00000600552 TCTN1Q2MV58 587 aa20.31■□□□□ 0.84
SHKBP1-223ENST00000600552 ZNF618Q5T7W0 954 aa20.31■□□□□ 0.84
SHKBP1-223ENST00000600552 CNKSR3Q6P9H4 555 aa20.31■□□□□ 0.84
SHKBP1-223ENST00000600552 SPRED2Q7Z698 418 aa20.31■□□□□ 0.84
SHKBP1-223ENST00000600552 ZNF654Q8IZM8 581 aa20.31■□□□□ 0.84
SHKBP1-223ENST00000600552 CMTR1Q8N1G2 835 aaKnown RBP20.31■□□□□ 0.84
SHKBP1-223ENST00000600552 SAMD3Q8N6K7 520 aa20.31■□□□□ 0.84
SHKBP1-223ENST00000600552 ATXN2LQ8WWM7 1075 aaKnown RBP20.31■□□□□ 0.84
SHKBP1-223ENST00000600552 CUL5Q93034 780 aa20.31■□□□□ 0.84
SHKBP1-223ENST00000600552 RRP36Q96EU6 259 aaKnown RBP20.31■□□□□ 0.84
SHKBP1-223ENST00000600552 ASB2Q96Q27 587 aa20.31■□□□□ 0.84
SHKBP1-223ENST00000600552 CCDC69A6NI79 296 aa20.3■□□□□ 0.84
SHKBP1-223ENST00000600552 KIF5BP33176 963 aa20.3■□□□□ 0.84
SHKBP1-223ENST00000600552 UTP14CQ5TAP6 766 aaKnown RBP20.3■□□□□ 0.84
SHKBP1-223ENST00000600552 USP17L6PQ6QN14 398 aa20.3■□□□□ 0.84
SHKBP1-223ENST00000600552 CYFIP1Q7L576 1253 aa20.3■□□□□ 0.84
SHKBP1-223ENST00000600552 LY9Q9HBG7 655 aa20.3■□□□□ 0.84
SHKBP1-223ENST00000600552 SEC63Q9UGP8 760 aaKnown RBP20.3■□□□□ 0.84
SHKBP1-223ENST00000600552 MTUS1Q9ULD2 1270 aa20.3■□□□□ 0.84
SHKBP1-223ENST00000600552 PRRC2BQ5JSZ5 2229 aaKnown RBP20.3■□□□□ 0.84
SHKBP1-223ENST00000600552 DOCK5Q9H7D0 1870 aa20.29■□□□□ 0.84
SHKBP1-223ENST00000600552 TCF20Q9UGU0 1960 aaKnown RBP20.29■□□□□ 0.84
SHKBP1-223ENST00000600552 hCG_1642624A0A1W2PR95 340 aa20.29■□□□□ 0.84
SHKBP1-223ENST00000600552 C17orf102A2RUQ5 167 aa20.29■□□□□ 0.84
SHKBP1-223ENST00000600552 LCHNA4D1U4 455 aa20.29■□□□□ 0.84
SHKBP1-223ENST00000600552 TGFB3P10600 412 aa20.29■□□□□ 0.84
SHKBP1-223ENST00000600552 MRPS9P82933 396 aaKnown RBP20.29■□□□□ 0.84
SHKBP1-223ENST00000600552 TFF2Q03403 129 aa20.29■□□□□ 0.84
SHKBP1-223ENST00000600552 GNPTABQ3T906 1256 aa20.29■□□□□ 0.84
SHKBP1-223ENST00000600552 CCDC82Q8N4S0 544 aa20.29■□□□□ 0.84
SHKBP1-223ENST00000600552 ATP6V0A1Q93050 837 aa20.29■□□□□ 0.84
SHKBP1-223ENST00000600552 LRRC2Q9BYS8 371 aa20.29■□□□□ 0.84
SHKBP1-223ENST00000600552 TTC28Q96AY4 2481 aa20.29■□□□□ 0.84
SHKBP1-223ENST00000600552 H3BRB1 525 aa20.28■□□□□ 0.84
SHKBP1-223ENST00000600552 TNFRSF10AO00220 468 aa20.28■□□□□ 0.84
SHKBP1-223ENST00000600552 PLEKHA8P1O95397 391 aa20.28■□□□□ 0.84
SHKBP1-223ENST00000600552 LGALS2P05162 132 aa20.28■□□□□ 0.84
SHKBP1-223ENST00000600552 IKBKEQ14164 716 aa20.28■□□□□ 0.84
SHKBP1-223ENST00000600552 ADAMTS19Q8TE59 1207 aa20.28■□□□□ 0.84
SHKBP1-223ENST00000600552 C16orf70Q9BSU1 422 aa20.28■□□□□ 0.84
SHKBP1-223ENST00000600552 TUT1Q9H6E5 874 aaKnown RBP20.28■□□□□ 0.84
SHKBP1-223ENST00000600552 MTCH2Q9Y6C9 303 aa20.28■□□□□ 0.84
SHKBP1-223ENST00000600552 CHD7Q9P2D1 2997 aa20.28■□□□□ 0.84
SHKBP1-223ENST00000600552 DDAH1O94760 285 aa20.27■□□□□ 0.84
SHKBP1-223ENST00000600552 PARNO95453 639 aaKnown RBP20.27■□□□□ 0.84
SHKBP1-223ENST00000600552 CTSHP09668 335 aa20.27■□□□□ 0.84
SHKBP1-223ENST00000600552 SMIM10L2AP0DMW4 78 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms