RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 INPP4AQ96PE3 977 aaPredicted RBP20.75■□□□□ 0.91
LIG1-216ENST00000598938 SENP6Q9GZR1 1112 aaPredicted RBP20.75■□□□□ 0.91
LIG1-216ENST00000598938 PRKAG2Q9UGJ0 569 aa20.75■□□□□ 0.91
LIG1-216ENST00000598938 KRT2P35908 639 aa20.74■□□□□ 0.91
LIG1-216ENST00000598938 ARHGAP4P98171 946 aa20.74■□□□□ 0.91
LIG1-216ENST00000598938 TNFAIP2Q03169 654 aa20.74■□□□□ 0.91
LIG1-216ENST00000598938 ZFP91Q96JP5 570 aaPredicted RBP20.74■□□□□ 0.91
LIG1-216ENST00000598938 GUCD1Q96NT3 240 aa20.74■□□□□ 0.91
LIG1-216ENST00000598938 BRMS1Q9HCU9 246 aa20.74■□□□□ 0.91
LIG1-216ENST00000598938 CYP3A4P08684 503 aa20.73■□□□□ 0.91
LIG1-216ENST00000598938 GUCY1B3Q02153 619 aa20.73■□□□□ 0.91
LIG1-216ENST00000598938 ZNF697Q5TEC3 545 aa20.73■□□□□ 0.91
LIG1-216ENST00000598938 ANO1Q5XXA6 986 aa20.73■□□□□ 0.91
LIG1-216ENST00000598938 CCDC62Q6P9F0 684 aa20.73■□□□□ 0.91
LIG1-216ENST00000598938 SEPT14Q6ZU15 432 aa20.73■□□□□ 0.91
LIG1-216ENST00000598938 KRT25Q7Z3Z0 450 aa20.73■□□□□ 0.91
LIG1-216ENST00000598938 DIS3L2Q8IYB7 885 aaKnown RBP20.73■□□□□ 0.91
LIG1-216ENST00000598938 TNFRSF25Q93038 417 aa20.73■□□□□ 0.91
LIG1-216ENST00000598938 LENG1Q96BZ8 264 aaPredicted RBP20.73■□□□□ 0.91
LIG1-216ENST00000598938 WDR11Q9BZH6 1224 aa20.73■□□□□ 0.91
LIG1-216ENST00000598938 GNEQ9Y223 722 aaKnown RBP20.73■□□□□ 0.91
LIG1-216ENST00000598938 UBIAD1Q9Y5Z9 338 aa20.73■□□□□ 0.91
LIG1-216ENST00000598938 KIAA1217Q5T5P2 1943 aa20.72■□□□□ 0.91
LIG1-216ENST00000598938 DUSP11O75319 330 aaKnown RBP20.72■□□□□ 0.91
LIG1-216ENST00000598938 ARIH2O95376 493 aa20.72■□□□□ 0.91
LIG1-216ENST00000598938 RARBP10826 455 aa20.72■□□□□ 0.91
LIG1-216ENST00000598938 SMPD1P17405 629 aa20.72■□□□□ 0.91
LIG1-216ENST00000598938 ICAM3P32942 547 aa20.72■□□□□ 0.91
LIG1-216ENST00000598938 NR5A1Q13285 461 aa20.72■□□□□ 0.91
LIG1-216ENST00000598938 TTLL4Q14679 1199 aa20.72■□□□□ 0.91
LIG1-216ENST00000598938 GNPTABQ3T906 1256 aa20.72■□□□□ 0.91
LIG1-216ENST00000598938 DUSP28Q4G0W2 176 aa20.72■□□□□ 0.91
LIG1-216ENST00000598938 TMEM63BQ5T3F8 832 aa20.72■□□□□ 0.91
LIG1-216ENST00000598938 RTEL1Q9NZ71 1219 aa20.72■□□□□ 0.91
LIG1-216ENST00000598938 BTBD18B2RXH4 712 aa20.71■□□□□ 0.91
LIG1-216ENST00000598938 EDIL3O43854 480 aa20.71■□□□□ 0.91
LIG1-216ENST00000598938 ITGB5P18084 799 aa20.71■□□□□ 0.91
LIG1-216ENST00000598938 NONOQ15233 471 aaKnown RBP eCLIP20.71■□□□□ 0.91
LIG1-216ENST00000598938 KCNV1Q6PIU1 500 aa20.71■□□□□ 0.91
LIG1-216ENST00000598938 TBCKQ8TEA7 893 aa20.71■□□□□ 0.91
LIG1-216ENST00000598938 MXRA8Q9BRK3 442 aa20.71■□□□□ 0.91
LIG1-216ENST00000598938 CCDC194A0A1B0GVG4 234 aa20.7■□□□□ 0.9
LIG1-216ENST00000598938 SPATA31C2B4DYI2 1134 aa20.7■□□□□ 0.9
LIG1-216ENST00000598938 NKRFO15226 690 aaKnown RBP eCLIP20.7■□□□□ 0.9
LIG1-216ENST00000598938 FIBPO43427 364 aa20.7■□□□□ 0.9
LIG1-216ENST00000598938 TXNP10599 105 aaKnown RBP20.7■□□□□ 0.9
LIG1-216ENST00000598938 TGFB3P10600 412 aa20.7■□□□□ 0.9
LIG1-216ENST00000598938 SEMA3FQ13275 785 aa20.7■□□□□ 0.9
LIG1-216ENST00000598938 SAFBQ15424 915 aaKnown RBP eCLIP20.7■□□□□ 0.9
LIG1-216ENST00000598938 GJC2Q5T442 439 aaPredicted RBP20.7■□□□□ 0.9
LIG1-216ENST00000598938 NLRX1Q86UT6 975 aa20.7■□□□□ 0.9
LIG1-216ENST00000598938 ARRDC4Q8NCT1 418 aa20.7■□□□□ 0.9
LIG1-216ENST00000598938 GPRASP2Q96D09 838 aa20.7■□□□□ 0.9
LIG1-216ENST00000598938 UPF3AQ9H1J1 476 aaKnown RBP20.7■□□□□ 0.9
LIG1-216ENST00000598938 JADE2Q9NQC1 790 aa20.7■□□□□ 0.9
LIG1-216ENST00000598938 XPNPEP3Q9NQH7 507 aa20.7■□□□□ 0.9
LIG1-216ENST00000598938 DDX41Q9UJV9 622 aaKnown RBP20.7■□□□□ 0.9
LIG1-216ENST00000598938 Q9Y3F1 56 aa20.7■□□□□ 0.9
LIG1-216ENST00000598938 MRVI1Q9Y6F6 885 aa20.7■□□□□ 0.9
LIG1-216ENST00000598938 SYNRGQ9UMZ2 1314 aa20.7■□□□□ 0.9
LIG1-216ENST00000598938 MYH7BA7E2Y1 1941 aa20.69■□□□□ 0.9
LIG1-216ENST00000598938 ADAMTS4O75173 837 aa20.69■□□□□ 0.9
LIG1-216ENST00000598938 PTGS1P23219 599 aa20.69■□□□□ 0.9
LIG1-216ENST00000598938 CIITAP33076 1130 aa20.69■□□□□ 0.9
LIG1-216ENST00000598938 USP11P51784 963 aa20.69■□□□□ 0.9
LIG1-216ENST00000598938 GJA9P57773 515 aa20.69■□□□□ 0.9
LIG1-216ENST00000598938 RTP1P59025 263 aa20.69■□□□□ 0.9
LIG1-216ENST00000598938 NKX3-2P78367 333 aa20.69■□□□□ 0.9
LIG1-216ENST00000598938 LY6KQ17RY6 165 aa20.69■□□□□ 0.9
LIG1-216ENST00000598938 CEP55Q53EZ4 464 aa20.69■□□□□ 0.9
LIG1-216ENST00000598938 EARS2Q5JPH6 523 aaKnown RBP20.69■□□□□ 0.9
LIG1-216ENST00000598938 PIK3AP1Q6ZUJ8 805 aa20.69■□□□□ 0.9
LIG1-216ENST00000598938 NIPA1Q7RTP0 329 aa20.69■□□□□ 0.9
LIG1-216ENST00000598938 TLK2Q86UE8 772 aa20.69■□□□□ 0.9
LIG1-216ENST00000598938 IGLV3-22A0A075B6J6 115 aa20.68■□□□□ 0.9
LIG1-216ENST00000598938 FAM86B1E9PN63 330 aa20.68■□□□□ 0.9
LIG1-216ENST00000598938 MEIS1O00470 390 aa20.68■□□□□ 0.9
LIG1-216ENST00000598938 FAM86B2P0C5J1 330 aa20.68■□□□□ 0.9
LIG1-216ENST00000598938 INF2Q27J81 1249 aa20.68■□□□□ 0.9
LIG1-216ENST00000598938 CYP2W1Q8TAV3 490 aa20.68■□□□□ 0.9
LIG1-216ENST00000598938 COPS5Q92905 334 aa20.68■□□□□ 0.9
LIG1-216ENST00000598938 CDHR1Q96JP9 859 aa20.68■□□□□ 0.9
LIG1-216ENST00000598938 FOXP1Q9H334 677 aaPredicted RBP20.68■□□□□ 0.9
LIG1-216ENST00000598938 FOXD4L1Q9NU39 408 aa20.68■□□□□ 0.9
LIG1-216ENST00000598938 FAM205CA6NFA0 338 aa20.67■□□□□ 0.9
LIG1-216ENST00000598938 KBTBD13C9JR72 458 aa20.67■□□□□ 0.9
LIG1-216ENST00000598938 CTAGE5O15320 804 aa20.67■□□□□ 0.9
LIG1-216ENST00000598938 MAFGO15525 162 aa20.67■□□□□ 0.9
LIG1-216ENST00000598938 PGK1P00558 417 aa20.67■□□□□ 0.9
LIG1-216ENST00000598938 UBA1P22314 1058 aaKnown RBP20.67■□□□□ 0.9
LIG1-216ENST00000598938 ZNF76P36508 570 aa20.67■□□□□ 0.9
LIG1-216ENST00000598938 ATN1P54259 1190 aaPredicted RBP20.67■□□□□ 0.9
LIG1-216ENST00000598938 SP2Q02086 613 aa20.67■□□□□ 0.9
LIG1-216ENST00000598938 MTMR1Q13613 665 aa20.67■□□□□ 0.9
LIG1-216ENST00000598938 SNX17Q15036 470 aa20.67■□□□□ 0.9
LIG1-216ENST00000598938 LRRC41Q15345 812 aa20.67■□□□□ 0.9
LIG1-216ENST00000598938 LARP1BQ659C4 914 aaKnown RBP20.67■□□□□ 0.9
LIG1-216ENST00000598938 CYP3A7-CYP3A51PA0A087WV96 503 aa20.66■□□□□ 0.9
LIG1-216ENST00000598938 DYNC1LI2O43237 492 aaPredicted RBP20.66■□□□□ 0.9
LIG1-216ENST00000598938 GH1P01241 217 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms