RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 SGMS1Q86VZ5 419 aa12.32□□□□□ -0.44
VRK3-214ENST00000598553 TRIM50Q86XT4 487 aa12.32□□□□□ -0.44
VRK3-214ENST00000598553 USP38Q8NB14 1042 aa12.32□□□□□ -0.44
VRK3-214ENST00000598553 EMID1Q96A84 441 aaPredicted RBP12.32□□□□□ -0.44
VRK3-214ENST00000598553 PGBD1Q96JS3 809 aa12.32□□□□□ -0.44
VRK3-214ENST00000598553 NEK1Q96PY6 1258 aa12.32□□□□□ -0.44
VRK3-214ENST00000598553 MAP3K14Q99558 947 aa12.32□□□□□ -0.44
VRK3-214ENST00000598553 C16orf70Q9BSU1 422 aa12.32□□□□□ -0.44
VRK3-214ENST00000598553 CDH23Q9H251 3354 aa12.32□□□□□ -0.44
VRK3-214ENST00000598553 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.31□□□□□ -0.44
VRK3-214ENST00000598553 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.31□□□□□ -0.44
VRK3-214ENST00000598553 B4DLN1 442 aa12.31□□□□□ -0.44
VRK3-214ENST00000598553 PPFIA3O75145 1194 aa12.31□□□□□ -0.44
VRK3-214ENST00000598553 F2P00734 622 aa12.31□□□□□ -0.44
VRK3-214ENST00000598553 IQCF3P0C7M6 154 aa12.31□□□□□ -0.44
VRK3-214ENST00000598553 CCND2P30279 289 aa12.31□□□□□ -0.44
VRK3-214ENST00000598553 MRPL12P52815 198 aaKnown RBP12.31□□□□□ -0.44
VRK3-214ENST00000598553 MFSD10Q14728 455 aa12.31□□□□□ -0.44
VRK3-214ENST00000598553 PTGISQ16647 500 aa12.31□□□□□ -0.44
VRK3-214ENST00000598553 TRIM71Q2Q1W2 868 aaKnown RBP12.31□□□□□ -0.44
VRK3-214ENST00000598553 WWC2Q6AWC2 1192 aa12.31□□□□□ -0.44
VRK3-214ENST00000598553 PSRC1Q6PGN9 363 aaPredicted RBP12.31□□□□□ -0.44
VRK3-214ENST00000598553 TMCO2Q7Z6W1 182 aaPredicted RBP12.31□□□□□ -0.44
VRK3-214ENST00000598553 FANCBQ8NB91 859 aa12.31□□□□□ -0.44
VRK3-214ENST00000598553 RRP36Q96EU6 259 aaKnown RBP12.31□□□□□ -0.44
VRK3-214ENST00000598553 CCDC136Q96JN2 1154 aa12.31□□□□□ -0.44
VRK3-214ENST00000598553 INPP4AQ96PE3 977 aaPredicted RBP12.31□□□□□ -0.44
VRK3-214ENST00000598553 MTA3Q9BTC8 594 aa12.31□□□□□ -0.44
VRK3-214ENST00000598553 NKX2-4Q9H2Z4 354 aa12.31□□□□□ -0.44
VRK3-214ENST00000598553 GTF2IRD1Q9UHL9 959 aa12.31□□□□□ -0.44
VRK3-214ENST00000598553 SLC12A7Q9Y666 1083 aa12.31□□□□□ -0.44
VRK3-214ENST00000598553 ATP9AO75110 1047 aa12.3□□□□□ -0.44
VRK3-214ENST00000598553 FGBP02675 491 aa12.3□□□□□ -0.44
VRK3-214ENST00000598553 KIF5BP33176 963 aa12.3□□□□□ -0.44
VRK3-214ENST00000598553 MBTPS1Q14703 1052 aa12.3□□□□□ -0.44
VRK3-214ENST00000598553 KIAA0753Q2KHM9 967 aa12.3□□□□□ -0.44
VRK3-214ENST00000598553 TSGA10IPQ3SY00 556 aa12.3□□□□□ -0.44
VRK3-214ENST00000598553 SESTD1Q86VW0 696 aa12.3□□□□□ -0.44
VRK3-214ENST00000598553 DHX37Q8IY37 1157 aaKnown RBP12.3□□□□□ -0.44
VRK3-214ENST00000598553 SLC17A8Q8NDX2 589 aa12.3□□□□□ -0.44
VRK3-214ENST00000598553 PPTC7Q8NI37 304 aa12.3□□□□□ -0.44
VRK3-214ENST00000598553 KCNB2Q92953 911 aa12.3□□□□□ -0.44
VRK3-214ENST00000598553 TIFAQ96CG3 184 aa12.3□□□□□ -0.44
VRK3-214ENST00000598553 SPATA33Q96N06 139 aa12.3□□□□□ -0.44
VRK3-214ENST00000598553 MAP3K20Q9NYL2 800 aaKnown RBP12.3□□□□□ -0.44
VRK3-214ENST00000598553 PKD2L1Q9P0L9 805 aa12.3□□□□□ -0.44
VRK3-214ENST00000598553 SNX14Q9Y5W7 946 aa12.3□□□□□ -0.44
VRK3-214ENST00000598553 ATG2AQ2TAZ0 1938 aa12.3□□□□□ -0.44
VRK3-214ENST00000598553 EYSQ5T1H1 3165 aa12.3□□□□□ -0.44
VRK3-214ENST00000598553 KLF18A0A0U1RQI7 1052 aa12.29□□□□□ -0.44
VRK3-214ENST00000598553 PIK3CDO00329 1044 aa12.29□□□□□ -0.44
VRK3-214ENST00000598553 KPNA6O60684 536 aa12.29□□□□□ -0.44
VRK3-214ENST00000598553 NBNO60934 754 aa12.29□□□□□ -0.44
VRK3-214ENST00000598553 LGALS2P05162 132 aa12.29□□□□□ -0.44
VRK3-214ENST00000598553 CASTP20810 708 aaKnown RBP12.29□□□□□ -0.44
VRK3-214ENST00000598553 SMARCA1P28370 1054 aa12.29□□□□□ -0.44
VRK3-214ENST00000598553 HSPA4P34932 840 aa12.29□□□□□ -0.44
VRK3-214ENST00000598553 SP4Q02446 784 aa12.29□□□□□ -0.44
VRK3-214ENST00000598553 APOBRQ0VD83 1088 aa12.29□□□□□ -0.44
VRK3-214ENST00000598553 LAMC2Q13753 1193 aa12.29□□□□□ -0.44
VRK3-214ENST00000598553 ADGRE1Q14246 886 aa12.29□□□□□ -0.44
VRK3-214ENST00000598553 DGKDQ16760 1214 aa12.29□□□□□ -0.44
VRK3-214ENST00000598553 DHX32Q7L7V1 743 aaKnown RBP12.29□□□□□ -0.44
VRK3-214ENST00000598553 SMARCC2Q8TAQ2 1214 aa12.29□□□□□ -0.44
VRK3-214ENST00000598553 SEZ6LQ9BYH1 1024 aa12.29□□□□□ -0.44
VRK3-214ENST00000598553 ZNF576Q9H609 170 aa12.29□□□□□ -0.44
VRK3-214ENST00000598553 PRDM6Q9NQX0 595 aa12.29□□□□□ -0.44
VRK3-214ENST00000598553 TMEM260Q9NX78 707 aa12.29□□□□□ -0.44
VRK3-214ENST00000598553 SPATA31C2B4DYI2 1134 aa12.28□□□□□ -0.44
VRK3-214ENST00000598553 DTNBO60941 627 aa12.28□□□□□ -0.44
VRK3-214ENST00000598553 ITGB5P18084 799 aa12.28□□□□□ -0.44
VRK3-214ENST00000598553 ICAM3P32942 547 aa12.28□□□□□ -0.44
VRK3-214ENST00000598553 PTPN11Q06124 597 aaPredicted RBP12.28□□□□□ -0.44
VRK3-214ENST00000598553 RTN1Q16799 776 aa12.28□□□□□ -0.44
VRK3-214ENST00000598553 BRDTQ58F21 947 aaPredicted RBP12.28□□□□□ -0.44
VRK3-214ENST00000598553 PCNX4Q63HM2 1172 aa12.28□□□□□ -0.44
VRK3-214ENST00000598553 CYFIP1Q7L576 1253 aa12.28□□□□□ -0.44
VRK3-214ENST00000598553 HEATR3Q7Z4Q2 680 aa12.28□□□□□ -0.44
VRK3-214ENST00000598553 SAMD3Q8N6K7 520 aa12.28□□□□□ -0.44
VRK3-214ENST00000598553 CYP2W1Q8TAV3 490 aa12.28□□□□□ -0.44
VRK3-214ENST00000598553 JAKMIP1Q96N16 626 aaKnown RBP12.28□□□□□ -0.44
VRK3-214ENST00000598553 GPR20Q99678 358 aa12.28□□□□□ -0.44
VRK3-214ENST00000598553 PRDM12Q9H4Q4 367 aa12.28□□□□□ -0.44
VRK3-214ENST00000598553 SEC63Q9UGP8 760 aaKnown RBP12.28□□□□□ -0.44
VRK3-214ENST00000598553 EPOPA6NHQ4 379 aa12.27□□□□□ -0.45
VRK3-214ENST00000598553 GOLGA8AA7E2F4 631 aa12.27□□□□□ -0.45
VRK3-214ENST00000598553 GOLGA8BA8MQT2 603 aa12.27□□□□□ -0.45
VRK3-214ENST00000598553 ZBBXA8MT70 800 aa12.27□□□□□ -0.45
VRK3-214ENST00000598553 STXBP3O00186 592 aa12.27□□□□□ -0.45
VRK3-214ENST00000598553 PITPNM1O00562 1244 aa12.27□□□□□ -0.45
VRK3-214ENST00000598553 SUPT20HL2P0C7V6 817 aa12.27□□□□□ -0.45
VRK3-214ENST00000598553 CKBP12277 381 aa12.27□□□□□ -0.45
VRK3-214ENST00000598553 KCNA2P16389 499 aa12.27□□□□□ -0.45
VRK3-214ENST00000598553 ADD1P35611 737 aaKnown RBP12.27□□□□□ -0.45
VRK3-214ENST00000598553 DEFB103AP81534 67 aa12.27□□□□□ -0.45
VRK3-214ENST00000598553 Q6ZUG5 572 aa12.27□□□□□ -0.45
VRK3-214ENST00000598553 MAFAQ8NHW3 353 aaPredicted RBP12.27□□□□□ -0.45
VRK3-214ENST00000598553 ZBTB10Q96DT7 871 aa12.27□□□□□ -0.45
VRK3-214ENST00000598553 LZTS2Q9BRK4 669 aa12.27□□□□□ -0.45
VRK3-214ENST00000598553 PCDHA6Q9UN73 950 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms