RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 HOXD8P13378 290 aaPredicted RBP17.35■□□□□ 0.37
LIG1-215ENST00000597901 CPA1P15085 419 aa17.35■□□□□ 0.37
LIG1-215ENST00000597901 UBA1P22314 1058 aaKnown RBP17.35■□□□□ 0.37
LIG1-215ENST00000597901 PSEN2P49810 448 aa17.35■□□□□ 0.37
LIG1-215ENST00000597901 GNPTABQ3T906 1256 aa17.35■□□□□ 0.37
LIG1-215ENST00000597901 PCNX4Q63HM2 1172 aa17.35■□□□□ 0.37
LIG1-215ENST00000597901 GDF6Q6KF10 455 aaPredicted RBP17.35■□□□□ 0.37
LIG1-215ENST00000597901 XRRA1Q6P2D8 792 aa17.35■□□□□ 0.37
LIG1-215ENST00000597901 OTOP2Q7RTS6 562 aa17.35■□□□□ 0.37
LIG1-215ENST00000597901 INPP4AQ96PE3 977 aaPredicted RBP17.35■□□□□ 0.37
LIG1-215ENST00000597901 ALG1Q9BT22 464 aa17.35■□□□□ 0.37
LIG1-215ENST00000597901 TTYH1Q9H313 450 aaPredicted RBP17.35■□□□□ 0.37
LIG1-215ENST00000597901 HDAC6Q9UBN7 1215 aa17.35■□□□□ 0.37
LIG1-215ENST00000597901 NOD1Q9Y239 953 aa17.35■□□□□ 0.37
LIG1-215ENST00000597901 SNX14Q9Y5W7 946 aa17.35■□□□□ 0.37
LIG1-215ENST00000597901 V9GY48 417 aaPredicted RBP17.35■□□□□ 0.37
LIG1-215ENST00000597901 BAZ2BQ9UIF8 2168 aaKnown RBP17.35■□□□□ 0.37
LIG1-215ENST00000597901 KLF18A0A0U1RQI7 1052 aa17.34■□□□□ 0.37
LIG1-215ENST00000597901 HAS3O00219 553 aa17.34■□□□□ 0.37
LIG1-215ENST00000597901 IQCF3P0C7M6 154 aa17.34■□□□□ 0.37
LIG1-215ENST00000597901 FUT2Q10981 343 aa17.34■□□□□ 0.37
LIG1-215ENST00000597901 MFSD10Q14728 455 aa17.34■□□□□ 0.37
LIG1-215ENST00000597901 RTN1Q16799 776 aa17.34■□□□□ 0.37
LIG1-215ENST00000597901 C7orf31Q8N865 590 aa17.34■□□□□ 0.37
LIG1-215ENST00000597901 CTAGE1Q96RT6 745 aa17.34■□□□□ 0.37
LIG1-215ENST00000597901 CDX2Q99626 313 aaPredicted RBP17.34■□□□□ 0.37
LIG1-215ENST00000597901 KATNAL1Q9BW62 490 aa17.34■□□□□ 0.37
LIG1-215ENST00000597901 FAM217BQ9NTX9 383 aaPredicted RBP17.34■□□□□ 0.37
LIG1-215ENST00000597901 CXXC1Q9P0U4 656 aaPredicted RBP17.34■□□□□ 0.37
LIG1-215ENST00000597901 DLL1O00548 723 aa17.33■□□□□ 0.36
LIG1-215ENST00000597901 FIBPO43427 364 aa17.33■□□□□ 0.36
LIG1-215ENST00000597901 F2P00734 622 aa17.33■□□□□ 0.36
LIG1-215ENST00000597901 FGD1P98174 961 aa17.33■□□□□ 0.36
LIG1-215ENST00000597901 SEMA3FQ13275 785 aa17.33■□□□□ 0.36
LIG1-215ENST00000597901 BFSP2Q13515 415 aa17.33■□□□□ 0.36
LIG1-215ENST00000597901 NEDD9Q14511 834 aa17.33■□□□□ 0.36
LIG1-215ENST00000597901 KIAA0753Q2KHM9 967 aa17.33■□□□□ 0.36
LIG1-215ENST00000597901 HEATR3Q7Z4Q2 680 aa17.33■□□□□ 0.36
LIG1-215ENST00000597901 JAKMIP1Q96N16 626 aaKnown RBP17.33■□□□□ 0.36
LIG1-215ENST00000597901 C16orf70Q9BSU1 422 aa17.33■□□□□ 0.36
LIG1-215ENST00000597901 GTF2IRD1Q9UHL9 959 aa17.33■□□□□ 0.36
LIG1-215ENST00000597901 GOLGA8AA7E2F4 631 aa17.32■□□□□ 0.36
LIG1-215ENST00000597901 GOLGA8BA8MQT2 603 aa17.32■□□□□ 0.36
LIG1-215ENST00000597901 PITPNM1O00562 1244 aa17.32■□□□□ 0.36
LIG1-215ENST00000597901 REC8O95072 547 aa17.32■□□□□ 0.36
LIG1-215ENST00000597901 ZNF286BP0CG31 522 aa17.32■□□□□ 0.36
LIG1-215ENST00000597901 DNAJB2P25686 324 aa17.32■□□□□ 0.36
LIG1-215ENST00000597901 CDC27P30260 824 aa17.32■□□□□ 0.36
LIG1-215ENST00000597901 UBE2SQ16763 222 aa17.32■□□□□ 0.36
LIG1-215ENST00000597901 Q6ZUG5 572 aa17.32■□□□□ 0.36
LIG1-215ENST00000597901 CYFIP1Q7L576 1253 aa17.32■□□□□ 0.36
LIG1-215ENST00000597901 DEFB128Q7Z7B8 93 aa17.32■□□□□ 0.36
LIG1-215ENST00000597901 NLRX1Q86UT6 975 aa17.32■□□□□ 0.36
LIG1-215ENST00000597901 MTIF3Q9H2K0 278 aaKnown RBP17.32■□□□□ 0.36
LIG1-215ENST00000597901 PCDHA6Q9UN73 950 aa17.32■□□□□ 0.36
LIG1-215ENST00000597901 PCDHA8Q9Y5H6 950 aa17.32■□□□□ 0.36
LIG1-215ENST00000597901 TMEM265A0A087WTH1 108 aa17.31■□□□□ 0.36
LIG1-215ENST00000597901 PFKMP08237 780 aa17.31■□□□□ 0.36
LIG1-215ENST00000597901 RFC2P35250 354 aa17.31■□□□□ 0.36
LIG1-215ENST00000597901 ADD1P35611 737 aaKnown RBP17.31■□□□□ 0.36
LIG1-215ENST00000597901 PBX2P40425 430 aa17.31■□□□□ 0.36
LIG1-215ENST00000597901 RCAN1P53805 252 aa17.31■□□□□ 0.36
LIG1-215ENST00000597901 APOBRQ0VD83 1088 aa17.31■□□□□ 0.36
LIG1-215ENST00000597901 WWC2Q6AWC2 1192 aa17.31■□□□□ 0.36
LIG1-215ENST00000597901 BLOC1S2Q6QNY1 142 aa17.31■□□□□ 0.36
LIG1-215ENST00000597901 METTL7BQ6UX53 244 aa17.31■□□□□ 0.36
LIG1-215ENST00000597901 SENP7Q9BQF6 1050 aa17.31■□□□□ 0.36
LIG1-215ENST00000597901 PBX4Q9BYU1 374 aa17.31■□□□□ 0.36
LIG1-215ENST00000597901 NAP1L2Q9ULW6 460 aaPredicted RBP17.31■□□□□ 0.36
LIG1-215ENST00000597901 SLC4A7Q9Y6M7 1214 aa17.31■□□□□ 0.36
LIG1-215ENST00000597901 CNTNAP5Q8WYK1 1306 aa17.3■□□□□ 0.36
LIG1-215ENST00000597901 SPDYE3A6NKU9 549 aa17.3■□□□□ 0.36
LIG1-215ENST00000597901 H3BRB1 525 aa17.3■□□□□ 0.36
LIG1-215ENST00000597901 NOP56O00567 594 aaKnown RBP17.3■□□□□ 0.36
LIG1-215ENST00000597901 ATP9AO75110 1047 aa17.3■□□□□ 0.36
LIG1-215ENST00000597901 PSMA5P28066 241 aa17.3■□□□□ 0.36
LIG1-215ENST00000597901 ZNF200P98182 395 aaPredicted RBP17.3■□□□□ 0.36
LIG1-215ENST00000597901 HIC1Q14526 733 aa17.3■□□□□ 0.36
LIG1-215ENST00000597901 TYW1BQ6NUM6 668 aa17.3■□□□□ 0.36
LIG1-215ENST00000597901 FBXL16Q8N461 479 aa17.3■□□□□ 0.36
LIG1-215ENST00000597901 CCDC155Q8N6L0 562 aa17.3■□□□□ 0.36
LIG1-215ENST00000597901 CAGE1Q8TC20 777 aa17.3■□□□□ 0.36
LIG1-215ENST00000597901 DHX38Q92620 1227 aaKnown RBP17.3■□□□□ 0.36
LIG1-215ENST00000597901 BRF1Q92994 677 aa17.3■□□□□ 0.36
LIG1-215ENST00000597901 TIFAQ96CG3 184 aa17.3■□□□□ 0.36
LIG1-215ENST00000597901 GPR20Q99678 358 aa17.3■□□□□ 0.36
LIG1-215ENST00000597901 USP26Q9BXU7 913 aa17.3■□□□□ 0.36
LIG1-215ENST00000597901 ZNF576Q9H609 170 aa17.3■□□□□ 0.36
LIG1-215ENST00000597901 TUT1Q9H6E5 874 aaKnown RBP17.3■□□□□ 0.36
LIG1-215ENST00000597901 RIC8AQ9NPQ8 531 aa17.3■□□□□ 0.36
LIG1-215ENST00000597901 PPP4R2Q9NY27 417 aa17.3■□□□□ 0.36
LIG1-215ENST00000597901 TELO2Q9Y4R8 837 aa17.3■□□□□ 0.36
LIG1-215ENST00000597901 UBIAD1Q9Y5Z9 338 aa17.3■□□□□ 0.36
LIG1-215ENST00000597901 MYH6P13533 1939 aa17.29■□□□□ 0.36
LIG1-215ENST00000597901 CCDC196A0A1B0GTZ2 297 aa17.29■□□□□ 0.36
LIG1-215ENST00000597901 SMCO2A6NFE2 343 aa17.29■□□□□ 0.36
LIG1-215ENST00000597901 EPB41L2O43491 1005 aaKnown RBP17.29■□□□□ 0.36
LIG1-215ENST00000597901 ITGB5P18084 799 aa17.29■□□□□ 0.36
LIG1-215ENST00000597901 RPS6KB1P23443 525 aa17.29■□□□□ 0.36
LIG1-215ENST00000597901 NAPAP54920 295 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms