RNA–Protein interactions for RNA: ENST00000592412.5

CIRBP-238, Transcript of cold inducible RNA binding protein, human

TSL 4

Gene CIRBP, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIRBP-238	ENST00000592412	PARP1	P09874	1014 aa	Known RBP	21.32	■■□□□ 1
CIRBP-238	ENST00000592412	NT5C2	P49902	561 aa		21.32	■■□□□ 1
CIRBP-238	ENST00000592412	LAMC2	Q13753	1193 aa		21.32	■■□□□ 1
CIRBP-238	ENST00000592412	CCDC178	Q5BJE1	867 aa		21.32	■■□□□ 1
CIRBP-238	ENST00000592412	CWC27	Q6UX04	472 aa	Known RBP	21.32	■■□□□ 1
CIRBP-238	ENST00000592412	PLEKHM2	Q8IWE5	1019 aa		21.32	■■□□□ 1
CIRBP-238	ENST00000592412	SMC5	Q8IY18	1101 aa		21.32	■■□□□ 1
CIRBP-238	ENST00000592412	MTMR8	Q96EF0	704 aa		21.32	■■□□□ 1
CIRBP-238	ENST00000592412	PDCD2L	Q9BRP1	358 aa		21.32	■■□□□ 1
CIRBP-238	ENST00000592412	KATNAL1	Q9BW62	490 aa		21.32	■■□□□ 1
CIRBP-238	ENST00000592412	CD320	Q9NPF0	282 aa		21.32	■■□□□ 1
CIRBP-238	ENST00000592412	SORBS3	O60504	671 aa		21.31	■■□□□ 1
CIRBP-238	ENST00000592412	SP2	Q02086	613 aa		21.31	■■□□□ 1
CIRBP-238	ENST00000592412	SLC35G1	Q2M3R5	365 aa		21.31	■■□□□ 1
CIRBP-238	ENST00000592412	HSDL1	Q3SXM5	330 aa		21.31	■■□□□ 1
CIRBP-238	ENST00000592412	MYSM1	Q5VVJ2	828 aa		21.31	■■□□□ 1
CIRBP-238	ENST00000592412	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	21.31	■■□□□ 1	2e-8	■□□□□ 8.6
CIRBP-238	ENST00000592412	DHX37	Q8IY37	1157 aa	Known RBP	21.31	■■□□□ 1
CIRBP-238	ENST00000592412	IL31RA	Q8NI17	732 aa		21.31	■■□□□ 1
CIRBP-238	ENST00000592412	IL25	Q9H293	177 aa		21.31	■■□□□ 1
CIRBP-238	ENST00000592412	OSBPL3	Q9H4L5	887 aa		21.31	■■□□□ 1
CIRBP-238	ENST00000592412	DHX16	O60231	1041 aa	Known RBP	21.3	■■□□□ 1
CIRBP-238	ENST00000592412	B4GALNT3	Q6L9W6	998 aa		21.3	■■□□□ 1
CIRBP-238	ENST00000592412	FAM117B	Q6P1L5	589 aa		21.3	■■□□□ 1
CIRBP-238	ENST00000592412	STOX1	Q6ZVD7	989 aa		21.3	■■□□□ 1
CIRBP-238	ENST00000592412	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	21.3	■■□□□ 1
CIRBP-238	ENST00000592412	FAM122A	Q96E09	287 aa		21.3	■■□□□ 1
CIRBP-238	ENST00000592412	TGS1	Q96RS0	853 aa	Known RBP	21.3	■■□□□ 1
CIRBP-238	ENST00000592412	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	21.29	■■□□□ 1
CIRBP-238	ENST00000592412	LGR5	O75473	907 aa		21.29	■■□□□ 1
CIRBP-238	ENST00000592412	IKBKE	Q14164	716 aa		21.29	■■□□□ 1
CIRBP-238	ENST00000592412	CELF3	Q5SZQ8	465 aa	Known RBP	21.29	■■□□□ 1
CIRBP-238	ENST00000592412	VSIG10L	Q86VR7	867 aa		21.29	■■□□□ 1
CIRBP-238	ENST00000592412	C16orf70	Q9BSU1	422 aa		21.29	■■□□□ 1
CIRBP-238	ENST00000592412	DSCC1	Q9BVC3	393 aa		21.29	■■□□□ 1
CIRBP-238	ENST00000592412	AMN	Q9BXJ7	453 aa		21.29	■■□□□ 1
CIRBP-238	ENST00000592412	MAD2L2	Q9UI95	211 aa		21.29	■■□□□ 1
CIRBP-238	ENST00000592412	MICAL3	Q7RTP6	2002 aa		21.29	■■□□□ 1
CIRBP-238	ENST00000592412	EFCAB14	O75071	495 aa		21.28	■■□□□ 1
CIRBP-238	ENST00000592412	PPFIA4	O75335	1185 aa		21.28	■■□□□ 1
CIRBP-238	ENST00000592412	GGPS1	O95749	300 aa		21.28	■■□□□ 1
CIRBP-238	ENST00000592412	MYCL	P12524	364 aa	Predicted RBP	21.28	■■□□□ 1
CIRBP-238	ENST00000592412	UBA1	P22314	1058 aa	Known RBP	21.28	■■□□□ 1
CIRBP-238	ENST00000592412	HOXA13	P31271	388 aa	Predicted RBP	21.28	■■□□□ 1
CIRBP-238	ENST00000592412	HOXC8	P31273	242 aa		21.28	■■□□□ 1
CIRBP-238	ENST00000592412	PGM5	Q15124	567 aa		21.28	■■□□□ 1
CIRBP-238	ENST00000592412	SEC23A	Q15436	765 aa		21.28	■■□□□ 1
CIRBP-238	ENST00000592412	SERINC5	Q86VE9	423 aa		21.28	■■□□□ 1
CIRBP-238	ENST00000592412	ZFP91	Q96JP5	570 aa	Predicted RBP	21.28	■■□□□ 1
CIRBP-238	ENST00000592412	C17orf80	Q9BSJ5	609 aa		21.28	■■□□□ 1
CIRBP-238	ENST00000592412	OSBPL7	Q9BZF2	842 aa		21.28	■■□□□ 1
CIRBP-238	ENST00000592412	BCAS3	Q9H6U6	928 aa		21.28	■■□□□ 1
CIRBP-238	ENST00000592412	UBE2Z	Q9H832	354 aa	Predicted RBP	21.28	■■□□□ 1
CIRBP-238	ENST00000592412	HTRA4	P83105	476 aa	Predicted RBP	21.27	■■□□□ 1
CIRBP-238	ENST00000592412	CHD1L	Q86WJ1	897 aa		21.27	■■□□□ 1
CIRBP-238	ENST00000592412	DBF4B	Q8NFT6	615 aa		21.27	■■□□□ 1
CIRBP-238	ENST00000592412	SPATA33	Q96N06	139 aa		21.27	■■□□□ 1
CIRBP-238	ENST00000592412	KLRF2	D3W0D1	207 aa		21.26	■□□□□ 0.99
CIRBP-238	ENST00000592412	ZBTB5	O15062	677 aa		21.26	■□□□□ 0.99
CIRBP-238	ENST00000592412	IGHD	P01880	384 aa		21.26	■□□□□ 0.99
CIRBP-238	ENST00000592412	IMMT	Q16891	758 aa	Known RBP	21.26	■□□□□ 0.99
CIRBP-238	ENST00000592412	CYB5R4	Q7L1T6	521 aa		21.26	■□□□□ 0.99
CIRBP-238	ENST00000592412	SP7	Q8TDD2	431 aa	Predicted RBP	21.26	■□□□□ 0.99
CIRBP-238	ENST00000592412	DIAPH3	Q9NSV4	1193 aa		21.26	■□□□□ 0.99
CIRBP-238	ENST00000592412	PCDHA1	Q9Y5I3	950 aa		21.26	■□□□□ 0.99
CIRBP-238	ENST00000592412	C5orf42	Q9H799	3197 aa		21.26	■□□□□ 0.99
CIRBP-238	ENST00000592412	TRIO	O75962	3097 aa		21.26	■□□□□ 0.99
CIRBP-238	ENST00000592412	PALM3	A6NDB9	673 aa	Predicted RBP	21.25	■□□□□ 0.99
CIRBP-238	ENST00000592412	FAM86C2P	A6NEL3	165 aa		21.25	■□□□□ 0.99
CIRBP-238	ENST00000592412	HOXD11	P31277	338 aa	Predicted RBP	21.25	■□□□□ 0.99
CIRBP-238	ENST00000592412	THPO	P40225	353 aa		21.25	■□□□□ 0.99
CIRBP-238	ENST00000592412	NUCB1	Q02818	461 aa		21.25	■□□□□ 0.99
CIRBP-238	ENST00000592412	PLEKHG4	Q58EX7	1191 aa		21.25	■□□□□ 0.99
CIRBP-238	ENST00000592412	TMEM31	Q5JXX7	168 aa		21.25	■□□□□ 0.99
CIRBP-238	ENST00000592412	IFIT1B	Q5T764	474 aa	Known RBP	21.25	■□□□□ 0.99
CIRBP-238	ENST00000592412	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	21.25	■□□□□ 0.99
CIRBP-238	ENST00000592412	UBAC1	Q9BSL1	405 aa		21.25	■□□□□ 0.99
CIRBP-238	ENST00000592412	KRT23	Q9C075	422 aa		21.25	■□□□□ 0.99
CIRBP-238	ENST00000592412	MAP3K20	Q9NYL2	800 aa	Known RBP	21.25	■□□□□ 0.99
CIRBP-238	ENST00000592412	INSL6	Q9Y581	213 aa		21.25	■□□□□ 0.99
CIRBP-238	ENST00000592412	EMSY	Q7Z589	1322 aa		21.25	■□□□□ 0.99
CIRBP-238	ENST00000592412	RSPH10B2	B2RC85	870 aa		21.24	■□□□□ 0.99
CIRBP-238	ENST00000592412	GPR37L1	O60883	481 aa		21.24	■□□□□ 0.99
CIRBP-238	ENST00000592412	RSPH10B	P0C881	870 aa		21.24	■□□□□ 0.99
CIRBP-238	ENST00000592412	KCNV1	Q6PIU1	500 aa		21.24	■□□□□ 0.99
CIRBP-238	ENST00000592412	MYOCD	Q8IZQ8	938 aa		21.24	■□□□□ 0.99
CIRBP-238	ENST00000592412	CNNM2	Q9H8M5	875 aa		21.24	■□□□□ 0.99
CIRBP-238	ENST00000592412	WDFY4	Q6ZS81	3184 aa		21.23	■□□□□ 0.99
CIRBP-238	ENST00000592412	PI4K2B	G5E9Z4	385 aa		21.23	■□□□□ 0.99
CIRBP-238	ENST00000592412	TREH	O43280	583 aa		21.23	■□□□□ 0.99
CIRBP-238	ENST00000592412	LEXM	Q3ZCV2	418 aa		21.23	■□□□□ 0.99
CIRBP-238	ENST00000592412	FBXO22	Q8NEZ5	403 aa		21.23	■□□□□ 0.99
CIRBP-238	ENST00000592412	PIGS	Q96S52	555 aa		21.23	■□□□□ 0.99
CIRBP-238	ENST00000592412	SENP2	Q9HC62	589 aa		21.23	■□□□□ 0.99
CIRBP-238	ENST00000592412	TELO2	Q9Y4R8	837 aa		21.23	■□□□□ 0.99
CIRBP-238	ENST00000592412	ARIH1	Q9Y4X5	557 aa	Predicted RBP	21.23	■□□□□ 0.99
CIRBP-238	ENST00000592412	PIEZO1	Q92508	2521 aa		21.22	■□□□□ 0.99
CIRBP-238	ENST00000592412	COL4A6	Q14031	1691 aa		21.22	■□□□□ 0.99
CIRBP-238	ENST00000592412	C17orf102	A2RUQ5	167 aa		21.22	■□□□□ 0.99
CIRBP-238	ENST00000592412		H3BRB1	525 aa		21.22	■□□□□ 0.99

Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms