RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 CDC27P30260 824 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 TXLNAP40222 546 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 BACE1P56817 501 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 HUNKP57058 714 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 PPATQ06203 517 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 SSRP1Q08945 709 aaKnown RBP6.14□□□□□ -1.43
LIG3-210ENST00000588109 ZNF543Q08ER8 600 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 FSTL1Q12841 308 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 CUL4AQ13619 759 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 HIF1AQ16665 826 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 ASPRV1Q53RT3 343 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 GPATCH4Q5T3I0 446 aaKnown RBP6.14□□□□□ -1.43
LIG3-210ENST00000588109 LDLRAD1Q5T700 205 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 C1orf53Q5VUE5 145 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 KCTD1Q719H9 257 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 RASGRP2Q7LDG7 609 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 SIAH1Q8IUQ4 282 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 CMTR1Q8N1G2 835 aaKnown RBP6.14□□□□□ -1.43
LIG3-210ENST00000588109 FAM184AQ8NB25 1140 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 LPAR1Q92633 364 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 PHKBQ93100 1093 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 OPTNQ96CV9 577 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 DDX11Q96FC9 970 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 INTS4Q96HW7 963 aaKnown RBP6.14□□□□□ -1.43
LIG3-210ENST00000588109 PRIMPOLQ96LW4 560 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 ZIC5Q96T25 663 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 MAP3K14Q99558 947 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 NUP88Q99567 741 aaPredicted RBP6.14□□□□□ -1.43
LIG3-210ENST00000588109 LZTS2Q9BRK4 669 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 LLPHQ9BRT6 129 aaKnown RBP6.14□□□□□ -1.43
LIG3-210ENST00000588109 WDR18Q9BV38 432 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 C2orf49Q9BVC5 232 aaPredicted RBP6.14□□□□□ -1.43
LIG3-210ENST00000588109 CFHR5Q9BXR6 569 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 SLC26A6Q9BXS9 759 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 PHACTR1Q9C0D0 580 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 KIAA1683Q9H0B3 1180 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 VCPKMTQ9H867 229 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 MAD2L2Q9UI95 211 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 ABT1Q9ULW3 272 aaKnown RBP6.14□□□□□ -1.43
LIG3-210ENST00000588109 KIF3AQ9Y496 699 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 PCDHGC4Q9Y5F7 938 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 NID2Q14112 1375 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 TRPM7Q96QT4 1865 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 C19orf81C9J6K1 198 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 TMEM232C9JQI7 657 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 WDR46O15213 610 aaKnown RBP6.13□□□□□ -1.43
LIG3-210ENST00000588109 ATXN7O15265 892 aaPredicted RBP6.13□□□□□ -1.43
LIG3-210ENST00000588109 WIPF1O43516 503 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 JAK2O60674 1132 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 PRMT3O60678 531 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 DTNBO60941 627 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 PLEKHA8P1O95397 391 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 SNHG28P0DPA3 235 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 MX2P20592 715 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 ATP4AP20648 1035 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 GJB2P29033 226 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 HMGCS2P54868 508 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 HMGN5P82970 282 aaKnown RBP6.13□□□□□ -1.43
LIG3-210ENST00000588109 ST3GAL1Q11201 340 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 PPIL2Q13356 520 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 DGKZQ13574 1117 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 FAM83BQ5T0W9 1011 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 LCE2AQ5TA79 106 aaPredicted RBP6.13□□□□□ -1.43
LIG3-210ENST00000588109 TMEM164Q5U3C3 297 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 CST9Q5W186 159 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 GADL1Q6ZQY3 521 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 TMTC3Q6ZXV5 915 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 HOMER1Q86YM7 354 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 ALDH16A1Q8IZ83 802 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 ZNF295-AS1Q8N0V1 137 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 NSUN7Q8NE18 718 aaKnown RBP6.13□□□□□ -1.43
LIG3-210ENST00000588109 STK32AQ8WU08 396 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 PIBF1Q8WXW3 757 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 TANGO6Q9C0B7 1094 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 ZCCHC2Q9C0B9 1178 aaKnown RBP6.13□□□□□ -1.43
LIG3-210ENST00000588109 UBA5Q9GZZ9 404 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 VAT1LQ9HCJ6 419 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 SEC63Q9UGP8 760 aaKnown RBP6.13□□□□□ -1.43
LIG3-210ENST00000588109 ZMIZ1Q9ULJ6 1067 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 AFG3L2Q9Y4W6 797 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 GPC6Q9Y625 555 aaPredicted RBP6.13□□□□□ -1.43
LIG3-210ENST00000588109 PASKQ96RG2 1323 aa6.13□□□□□ -1.43
LIG3-210ENST00000588109 hCG_1642624A0A1W2PR95 340 aa6.12□□□□□ -1.43
LIG3-210ENST00000588109 TMEM88BA6NKF7 163 aa6.12□□□□□ -1.43
LIG3-210ENST00000588109 H3BQV1 296 aa6.12□□□□□ -1.43
LIG3-210ENST00000588109 CXCL11O14625 94 aa6.12□□□□□ -1.43
LIG3-210ENST00000588109 KHNYNO15037 678 aaKnown RBP6.12□□□□□ -1.43
LIG3-210ENST00000588109 FLOT1O75955 427 aa6.12□□□□□ -1.43
LIG3-210ENST00000588109 DEXIO95424 95 aa6.12□□□□□ -1.43
LIG3-210ENST00000588109 CTDNEP1O95476 244 aa6.12□□□□□ -1.43
LIG3-210ENST00000588109 IFNAR1P17181 557 aa6.12□□□□□ -1.43
LIG3-210ENST00000588109 VCAM1P19320 739 aa6.12□□□□□ -1.43
LIG3-210ENST00000588109 PDCP20941 246 aa6.12□□□□□ -1.43
LIG3-210ENST00000588109 WEE1P30291 646 aa6.12□□□□□ -1.43
LIG3-210ENST00000588109 SLC16A2P36021 539 aa6.12□□□□□ -1.43
LIG3-210ENST00000588109 ZNF157P51786 506 aaPredicted RBP6.12□□□□□ -1.43
LIG3-210ENST00000588109 STAT2P52630 851 aa6.12□□□□□ -1.43
LIG3-210ENST00000588109 SNAPC2Q13487 334 aa6.12□□□□□ -1.43
LIG3-210ENST00000588109 TRIM29Q14134 588 aa6.12□□□□□ -1.43
LIG3-210ENST00000588109 KIAA1755Q5JYT7 1200 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms