RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 KIFC2Q96AC6 838 aa11.7□□□□□ -0.54
LIG3-203ENST00000585370 CALML4Q96GE6 196 aa11.7□□□□□ -0.54
LIG3-203ENST00000585370 C12orf42Q96LP6 360 aa11.7□□□□□ -0.54
LIG3-203ENST00000585370 LRRC27Q9C0I9 530 aa11.7□□□□□ -0.54
LIG3-203ENST00000585370 RNF208Q9H0X6 261 aa11.7□□□□□ -0.54
LIG3-203ENST00000585370 DISC1Q9NRI5 854 aa11.7□□□□□ -0.54
LIG3-203ENST00000585370 RMND1Q9NWS8 449 aa11.7□□□□□ -0.54
LIG3-203ENST00000585370 DDX25Q9UHL0 483 aaKnown RBP11.7□□□□□ -0.54
LIG3-203ENST00000585370 AGTPBP1Q9UPW5 1226 aa11.7□□□□□ -0.54
LIG3-203ENST00000585370 CTDP1Q9Y5B0 961 aaPredicted RBP11.7□□□□□ -0.54
LIG3-203ENST00000585370 DOCK1Q14185 1865 aa11.7□□□□□ -0.54
LIG3-203ENST00000585370 GOLGA6L6A8MZA4 724 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 USP17L15C9J2P7 530 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 USP17L13C9JLJ4 530 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 USP17L11C9JVI0 530 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 USP17L18D6R9N7 530 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 USP17L22D6RA61 530 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 USP17L17D6RBQ6 530 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 USP17L19D6RCP7 530 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 USP17L20D6RJB6 530 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 ADCY3O60266 1144 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 ZBED4O75132 1171 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 ADCY5O95622 1261 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 ICAM1P05362 532 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 STAT6P42226 847 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 FXR1P51114 621 aaKnown RBP eCLIP11.69□□□□□ -0.54
LIG3-203ENST00000585370 UBXN2AP68543 259 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 ARHGAP4P98171 946 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 USP17L24Q0WX57 530 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 MORC3Q14149 939 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 ZYXQ15942 572 aaKnown RBP11.69□□□□□ -0.54
LIG3-203ENST00000585370 USH1GQ495M9 461 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 Q4G0T1 1027 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 PDXDC2PQ6P474 469 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 USP17L6PQ6QN14 398 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 C11orf57Q6ZUT1 292 aaPredicted RBP11.69□□□□□ -0.54
LIG3-203ENST00000585370 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.69□□□□□ -0.54
LIG3-203ENST00000585370 KCTD17Q8N5Z5 321 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 ANKRD13CQ8N6S4 541 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 SLAIN1Q8ND83 568 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 RASSF8Q8NHQ8 419 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 CRYGNQ8WXF5 182 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 CCDC47Q96A33 483 aaKnown RBP11.69□□□□□ -0.54
LIG3-203ENST00000585370 FAM20AQ96MK3 541 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 UNC93B1Q9H1C4 597 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 STK17AQ9UEE5 414 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 LRWD1Q9UFC0 647 aa11.69□□□□□ -0.54
LIG3-203ENST00000585370 A0A087X0B3 334 aa11.68□□□□□ -0.54
LIG3-203ENST00000585370 BIN1O00499 593 aa11.68□□□□□ -0.54
LIG3-203ENST00000585370 EDIL3O43854 480 aa11.68□□□□□ -0.54
LIG3-203ENST00000585370 ELNP15502 786 aa11.68□□□□□ -0.54
LIG3-203ENST00000585370 ERCC5P28715 1186 aaPredicted RBP11.68□□□□□ -0.54
LIG3-203ENST00000585370 TECP42680 631 aa11.68□□□□□ -0.54
LIG3-203ENST00000585370 TXKP42681 527 aa11.68□□□□□ -0.54
LIG3-203ENST00000585370 OAZ1P54368 228 aa11.68□□□□□ -0.54
LIG3-203ENST00000585370 HMGCS2P54868 508 aa11.68□□□□□ -0.54
LIG3-203ENST00000585370 GHRHRQ02643 423 aa11.68□□□□□ -0.54
LIG3-203ENST00000585370 DPYDQ12882 1025 aa11.68□□□□□ -0.54
LIG3-203ENST00000585370 IRF5Q13568 498 aa11.68□□□□□ -0.54
LIG3-203ENST00000585370 DPCR1Q3MIW9 517 aa11.68□□□□□ -0.54
LIG3-203ENST00000585370 KRT79Q5XKE5 535 aa11.68□□□□□ -0.54
LIG3-203ENST00000585370 DHX40Q8IX18 779 aaKnown RBP11.68□□□□□ -0.54
LIG3-203ENST00000585370 PROCA1Q8NCQ7 364 aaPredicted RBP11.68□□□□□ -0.54
LIG3-203ENST00000585370 PXYLP1Q8TE99 480 aa11.68□□□□□ -0.54
LIG3-203ENST00000585370 U2AF1L4Q8WU68 220 aaKnown RBP11.68□□□□□ -0.54
LIG3-203ENST00000585370 DPF3Q92784 378 aa11.68□□□□□ -0.54
LIG3-203ENST00000585370 SLC38A10Q9HBR0 1119 aa11.68□□□□□ -0.54
LIG3-203ENST00000585370 EMILIN3Q9NT22 766 aa11.68□□□□□ -0.54
LIG3-203ENST00000585370 TMOD4Q9NZQ9 345 aa11.68□□□□□ -0.54
LIG3-203ENST00000585370 MAN1B1Q9UKM7 699 aa11.68□□□□□ -0.54
LIG3-203ENST00000585370 PPP1R9AQ9ULJ8 1098 aa11.68□□□□□ -0.54
LIG3-203ENST00000585370 PCDHA12Q9UN75 941 aa11.68□□□□□ -0.54
LIG3-203ENST00000585370 TNPO2O14787 897 aaKnown RBP11.67□□□□□ -0.54
LIG3-203ENST00000585370 SGPL1O95470 568 aa11.67□□□□□ -0.54
LIG3-203ENST00000585370 TDP2O95551 362 aa11.67□□□□□ -0.54
LIG3-203ENST00000585370 INHAP05111 366 aa11.67□□□□□ -0.54
LIG3-203ENST00000585370 ZNF76P36508 570 aa11.67□□□□□ -0.54
LIG3-203ENST00000585370 AFMP43652 599 aa11.67□□□□□ -0.54
LIG3-203ENST00000585370 SNAP25P60880 206 aa11.67□□□□□ -0.54
LIG3-203ENST00000585370 PLCB2Q00722 1185 aa11.67□□□□□ -0.54
LIG3-203ENST00000585370 MTMR2Q13614 643 aa11.67□□□□□ -0.54
LIG3-203ENST00000585370 DHX8Q14562 1220 aaKnown RBP11.67□□□□□ -0.54
LIG3-203ENST00000585370 KCNB1Q14721 858 aa11.67□□□□□ -0.54
LIG3-203ENST00000585370 KARSQ15046 597 aaKnown RBP11.67□□□□□ -0.54
LIG3-203ENST00000585370 FAM110CQ1W6H9 321 aa11.67□□□□□ -0.54
LIG3-203ENST00000585370 SH3D19Q5HYK7 790 aa11.67□□□□□ -0.54
LIG3-203ENST00000585370 CCDC174Q6PII3 467 aa11.67□□□□□ -0.54
LIG3-203ENST00000585370 ERCC4Q92889 916 aaPredicted RBP11.67□□□□□ -0.54
LIG3-203ENST00000585370 CDK5RAP3Q96JB5 506 aa11.67□□□□□ -0.54
LIG3-203ENST00000585370 TRIM5Q9C035 493 aa11.67□□□□□ -0.54
LIG3-203ENST00000585370 TANGO6Q9C0B7 1094 aa11.67□□□□□ -0.54
LIG3-203ENST00000585370 NT5C3AQ9H0P0 336 aa11.67□□□□□ -0.54
LIG3-203ENST00000585370 TTC12Q9H892 705 aaPredicted RBP11.67□□□□□ -0.54
LIG3-203ENST00000585370 KCNMB3Q9NPA1 279 aa11.67□□□□□ -0.54
LIG3-203ENST00000585370 KBTBD4Q9NVX7 518 aa11.67□□□□□ -0.54
LIG3-203ENST00000585370 PNMA3Q9UL41 463 aa11.67□□□□□ -0.54
LIG3-203ENST00000585370 CCPG1Q9ULG6 757 aa11.67□□□□□ -0.54
LIG3-203ENST00000585370 KDM3AQ9Y4C1 1321 aa11.66□□□□□ -0.54
LIG3-203ENST00000585370 OPLAHO14841 1288 aa11.66□□□□□ -0.54
LIG3-203ENST00000585370 SLC37A4O43826 429 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms