RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 SHHQ15465 462 aa27.43■■□□□ 1.98
SHMT1-206ENST00000579558 C9orf50Q5SZB4 431 aa27.43■■□□□ 1.98
SHMT1-206ENST00000579558 MYSM1Q5VVJ2 828 aa27.43■■□□□ 1.98
SHMT1-206ENST00000579558 MFSD5Q6N075 450 aa27.43■■□□□ 1.98
SHMT1-206ENST00000579558 NFRKBQ6P4R8 1299 aa27.43■■□□□ 1.98
SHMT1-206ENST00000579558 PPP1R13LQ8WUF5 828 aa27.43■■□□□ 1.98
SHMT1-206ENST00000579558 SPATA33Q96N06 139 aa27.43■■□□□ 1.98
SHMT1-206ENST00000579558 BARHL2Q9NY43 387 aa27.43■■□□□ 1.98
SHMT1-206ENST00000579558 FIBPO43427 364 aa27.42■■□□□ 1.98
SHMT1-206ENST00000579558 ADCY7P51828 1080 aa27.42■■□□□ 1.98
SHMT1-206ENST00000579558 EVCP57679 992 aa27.42■■□□□ 1.98
SHMT1-206ENST00000579558 HIPK3Q9H422 1215 aa27.42■■□□□ 1.98
SHMT1-206ENST00000579558 EHMT1Q9H9B1 1298 aa27.42■■□□□ 1.98
SHMT1-206ENST00000579558 MLXIPQ9HAP2 919 aa27.42■■□□□ 1.98
SHMT1-206ENST00000579558 RIC8AQ9NPQ8 531 aa27.42■■□□□ 1.98
SHMT1-206ENST00000579558 TRMT13Q9NUP7 481 aaKnown RBP27.42■■□□□ 1.98
SHMT1-206ENST00000579558 PCDHA6Q9UN73 950 aa27.42■■□□□ 1.98
SHMT1-206ENST00000579558 PCDHA8Q9Y5H6 950 aa27.42■■□□□ 1.98
SHMT1-206ENST00000579558 SPATA31C2B4DYI2 1134 aa27.41■■□□□ 1.98
SHMT1-206ENST00000579558 SUPT20HL2P0C7V6 817 aa27.41■■□□□ 1.98
SHMT1-206ENST00000579558 PDIA3P30101 505 aaKnown RBP27.41■■□□□ 1.98
SHMT1-206ENST00000579558 CYP2C18P33260 490 aa27.41■■□□□ 1.98
SHMT1-206ENST00000579558 EPHB4P54760 987 aa27.41■■□□□ 1.98
SHMT1-206ENST00000579558 PFKFB3Q16875 520 aaPredicted RBP27.41■■□□□ 1.98
SHMT1-206ENST00000579558 TMEM199Q8N511 208 aa27.41■■□□□ 1.98
SHMT1-206ENST00000579558 SMCO2A6NFE2 343 aa27.4■■□□□ 1.98
SHMT1-206ENST00000579558 SCG2P13521 617 aa27.4■■□□□ 1.98
SHMT1-206ENST00000579558 CCT2P78371 535 aaKnown RBP27.4■■□□□ 1.98
SHMT1-206ENST00000579558 PTPN11Q06124 597 aaPredicted RBP27.4■■□□□ 1.98
SHMT1-206ENST00000579558 SEMA3FQ13275 785 aa27.4■■□□□ 1.98
SHMT1-206ENST00000579558 PPIGQ13427 754 aaKnown RBP eCLIP27.4■■□□□ 1.983e-6■□□□□ 10.9
SHMT1-206ENST00000579558 HSDL1Q3SXM5 330 aa27.4■■□□□ 1.98
SHMT1-206ENST00000579558 NLRX1Q86UT6 975 aa27.4■■□□□ 1.98
SHMT1-206ENST00000579558 TEX2Q8IWB9 1127 aa27.4■■□□□ 1.98
SHMT1-206ENST00000579558 KAT2BQ92831 832 aa27.4■■□□□ 1.98
SHMT1-206ENST00000579558 ZNF286BP0CG31 522 aa27.39■■□□□ 1.98
SHMT1-206ENST00000579558 AKAP17AQ02040 695 aaKnown RBP27.39■■□□□ 1.98
SHMT1-206ENST00000579558 NEDD9Q14511 834 aa27.39■■□□□ 1.98
SHMT1-206ENST00000579558 PHKBQ93100 1093 aa27.39■■□□□ 1.98
SHMT1-206ENST00000579558 NOC4LQ9BVI4 516 aaKnown RBP27.39■■□□□ 1.98
SHMT1-206ENST00000579558 KATNAL1Q9BW62 490 aa27.39■■□□□ 1.98
SHMT1-206ENST00000579558 PDRG1Q9NUG6 133 aa27.39■■□□□ 1.98
SHMT1-206ENST00000579558 PRPF3O43395 683 aaKnown RBP27.38■■□□□ 1.97
SHMT1-206ENST00000579558 PPFIA4O75335 1185 aa27.38■■□□□ 1.97
SHMT1-206ENST00000579558 CYP2C9P11712 490 aa27.38■■□□□ 1.97
SHMT1-206ENST00000579558 HOXD8P13378 290 aaPredicted RBP27.38■■□□□ 1.97
SHMT1-206ENST00000579558 CSF2RAP15509 400 aa27.38■■□□□ 1.97
SHMT1-206ENST00000579558 GLT8D2Q9H1C3 349 aa27.38■■□□□ 1.97
SHMT1-206ENST00000579558 BCAS3Q9H6U6 928 aa27.38■■□□□ 1.97
SHMT1-206ENST00000579558 NCOA5Q9HCD5 579 aaKnown RBP27.38■■□□□ 1.97
SHMT1-206ENST00000579558 UMODL1Q5DID0 1318 aa27.38■■□□□ 1.97
SHMT1-206ENST00000579558 EIF5BO60841 1220 aaKnown RBP27.37■■□□□ 1.97
SHMT1-206ENST00000579558 F2P00734 622 aa27.37■■□□□ 1.97
SHMT1-206ENST00000579558 PSEN2P49810 448 aa27.37■■□□□ 1.97
SHMT1-206ENST00000579558 NTRK3Q16288 839 aa27.37■■□□□ 1.97
SHMT1-206ENST00000579558 CYFIP1Q7L576 1253 aa27.37■■□□□ 1.97
SHMT1-206ENST00000579558 GPRASP2Q96D09 838 aa27.37■■□□□ 1.97
SHMT1-206ENST00000579558 PGBD1Q96JS3 809 aa27.37■■□□□ 1.97
SHMT1-206ENST00000579558 LARP6Q9BRS8 491 aaKnown RBP27.37■■□□□ 1.97
SHMT1-206ENST00000579558 ALG1Q9BT22 464 aa27.37■■□□□ 1.97
SHMT1-206ENST00000579558 DOCK5Q9H7D0 1870 aa27.37■■□□□ 1.97
SHMT1-206ENST00000579558 NOP56O00567 594 aaKnown RBP27.36■■□□□ 1.97
SHMT1-206ENST00000579558 FOSP01100 380 aaPredicted RBP27.36■■□□□ 1.97
SHMT1-206ENST00000579558 IFNAR1P17181 557 aa27.36■■□□□ 1.97
SHMT1-206ENST00000579558 CCL23P55773 120 aa27.36■■□□□ 1.97
SHMT1-206ENST00000579558 ANAPC15P60006 121 aa27.36■■□□□ 1.97
SHMT1-206ENST00000579558 MFSD10Q14728 455 aa27.36■■□□□ 1.97
SHMT1-206ENST00000579558 PKN1Q16512 942 aa27.36■■□□□ 1.97
SHMT1-206ENST00000579558 METTL7BQ6UX53 244 aa27.36■■□□□ 1.97
SHMT1-206ENST00000579558 ZNF274Q96GC6 653 aaPredicted RBP27.36■■□□□ 1.97
SHMT1-206ENST00000579558 CDHR1Q96JP9 859 aa27.36■■□□□ 1.97
SHMT1-206ENST00000579558 RNPC3Q96LT9 517 aaKnown RBP27.36■■□□□ 1.97
SHMT1-206ENST00000579558 SLC26A6Q9BXS9 759 aa27.36■■□□□ 1.97
SHMT1-206ENST00000579558 RNF26Q9BY78 433 aaPredicted RBP27.36■■□□□ 1.97
SHMT1-206ENST00000579558 NOD1Q9Y239 953 aa27.36■■□□□ 1.97
SHMT1-206ENST00000579558 UBIAD1Q9Y5Z9 338 aa27.36■■□□□ 1.97
SHMT1-206ENST00000579558 PPFIA3O75145 1194 aa27.35■■□□□ 1.97
SHMT1-206ENST00000579558 ITGB5P18084 799 aa27.35■■□□□ 1.97
SHMT1-206ENST00000579558 KIAA0753Q2KHM9 967 aa27.35■■□□□ 1.97
SHMT1-206ENST00000579558 SESTD1Q86VW0 696 aa27.35■■□□□ 1.97
SHMT1-206ENST00000579558 CCDC12Q8WUD4 166 aaPredicted RBP27.35■■□□□ 1.97
SHMT1-206ENST00000579558 SENP7Q9BQF6 1050 aa27.35■■□□□ 1.97
SHMT1-206ENST00000579558 ANO3Q9BYT9 981 aa27.35■■□□□ 1.97
SHMT1-206ENST00000579558 TMEM260Q9NX78 707 aa27.35■■□□□ 1.97
SHMT1-206ENST00000579558 AP3B2Q13367 1082 aa27.34■■□□□ 1.97
SHMT1-206ENST00000579558 C7orf31Q8N865 590 aa27.34■■□□□ 1.97
SHMT1-206ENST00000579558 BUD13Q9BRD0 619 aaKnown RBP eCLIP27.34■■□□□ 1.97
SHMT1-206ENST00000579558 WNT8AQ9H1J5 351 aa27.34■■□□□ 1.97
SHMT1-206ENST00000579558 ESYT2A0FGR8 921 aa27.33■■□□□ 1.97
SHMT1-206ENST00000579558 HAS3O00219 553 aa27.33■■□□□ 1.97
SHMT1-206ENST00000579558 ACRP10323 421 aa27.33■■□□□ 1.97
SHMT1-206ENST00000579558 CLK2P49760 499 aaKnown RBP27.33■■□□□ 1.97
SHMT1-206ENST00000579558 STK3Q13188 491 aa27.33■■□□□ 1.97
SHMT1-206ENST00000579558 MTMR1Q13613 665 aa27.33■■□□□ 1.97
SHMT1-206ENST00000579558 PTGISQ16647 500 aa27.33■■□□□ 1.97
SHMT1-206ENST00000579558 GDF6Q6KF10 455 aaPredicted RBP27.33■■□□□ 1.97
SHMT1-206ENST00000579558 GPR153Q6NV75 609 aa27.33■■□□□ 1.97
SHMT1-206ENST00000579558 GIMAP8Q8ND71 665 aaPredicted RBP27.33■■□□□ 1.97
SHMT1-206ENST00000579558 C6orf50Q9HD87 102 aa27.33■■□□□ 1.97
SHMT1-206ENST00000579558 IL23AQ9NPF7 189 aa27.33■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms