RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 PKN1Q16512 942 aa22.31■■□□□ 1.16
SS18-209ENST00000578595 JAKMIP3Q5VZ66 844 aa22.31■■□□□ 1.16
SS18-209ENST00000578595 XRRA1Q6P2D8 792 aa22.31■■□□□ 1.16
SS18-209ENST00000578595 VPS54Q9P1Q0 977 aa22.31■■□□□ 1.16
SS18-209ENST00000578595 TPCN1Q9ULQ1 816 aa22.31■■□□□ 1.16
SS18-209ENST00000578595 A6NJR5 290 aa22.3■■□□□ 1.16
SS18-209ENST00000578595 FIBPO43427 364 aa22.3■■□□□ 1.16
SS18-209ENST00000578595 KPNA6O60684 536 aa22.3■■□□□ 1.16
SS18-209ENST00000578595 FOSP01100 380 aaPredicted RBP22.3■■□□□ 1.16
SS18-209ENST00000578595 SP4Q02446 784 aa22.3■■□□□ 1.16
SS18-209ENST00000578595 SCRN1Q12765 414 aa22.3■■□□□ 1.16
SS18-209ENST00000578595 SH3RF1Q7Z6J0 888 aa22.3■■□□□ 1.16
SS18-209ENST00000578595 SPATA33Q96N06 139 aa22.3■■□□□ 1.16
SS18-209ENST00000578595 INPP4AQ96PE3 977 aaPredicted RBP22.3■■□□□ 1.16
SS18-209ENST00000578595 PKD2L1Q9P0L9 805 aa22.3■■□□□ 1.16
SS18-209ENST00000578595 NOP56O00567 594 aaKnown RBP22.29■■□□□ 1.16
SS18-209ENST00000578595 RAG1P15918 1043 aa22.29■■□□□ 1.16
SS18-209ENST00000578595 GNA11P29992 359 aa22.29■■□□□ 1.16
SS18-209ENST00000578595 NLRP5P59047 1200 aa22.29■■□□□ 1.16
SS18-209ENST00000578595 AP3B2Q13367 1082 aa22.29■■□□□ 1.16
SS18-209ENST00000578595 DGKDQ16760 1214 aa22.29■■□□□ 1.16
SS18-209ENST00000578595 REXO1Q8N1G1 1221 aaKnown RBP22.29■■□□□ 1.16
SS18-209ENST00000578595 PPP1R13LQ8WUF5 828 aa22.29■■□□□ 1.16
SS18-209ENST00000578595 C22orf23Q9BZE7 217 aa22.29■■□□□ 1.16
SS18-209ENST00000578595 UBE2OQ9C0C9 1292 aaKnown RBP22.29■■□□□ 1.16
SS18-209ENST00000578595 TRIP12Q14669 1992 aaPredicted RBP22.29■■□□□ 1.16
SS18-209ENST00000578595 DEXIO95424 95 aa22.28■■□□□ 1.16
SS18-209ENST00000578595 TGFB3P10600 412 aa22.28■■□□□ 1.16
SS18-209ENST00000578595 ZNF76P36508 570 aa22.28■■□□□ 1.16
SS18-209ENST00000578595 CELF3Q5SZQ8 465 aaKnown RBP22.28■■□□□ 1.16
SS18-209ENST00000578595 ANKRD33Q7Z3H0 272 aa22.28■■□□□ 1.16
SS18-209ENST00000578595 BICD2Q8TD16 824 aa22.28■■□□□ 1.16
SS18-209ENST00000578595 ALDH8A1Q9H2A2 487 aaPredicted RBP22.28■■□□□ 1.16
SS18-209ENST00000578595 GTF3C3Q9Y5Q9 886 aa22.28■■□□□ 1.16
SS18-209ENST00000578595 ESYT2A0FGR8 921 aa22.27■■□□□ 1.16
SS18-209ENST00000578595 PFKFB2O60825 505 aa22.27■■□□□ 1.16
SS18-209ENST00000578595 DTNBO60941 627 aa22.27■■□□□ 1.16
SS18-209ENST00000578595 ZNF286BP0CG31 522 aa22.27■■□□□ 1.16
SS18-209ENST00000578595 SP2Q02086 613 aa22.27■■□□□ 1.16
SS18-209ENST00000578595 MTMR1Q13613 665 aa22.27■■□□□ 1.16
SS18-209ENST00000578595 NEDD9Q14511 834 aa22.27■■□□□ 1.16
SS18-209ENST00000578595 CYFIP1Q7L576 1253 aa22.27■■□□□ 1.16
SS18-209ENST00000578595 FAM126BQ8IXS8 530 aa22.27■■□□□ 1.16
SS18-209ENST00000578595 NECAB1Q8N987 351 aa22.27■■□□□ 1.16
SS18-209ENST00000578595 PPTC7Q8NI37 304 aa22.27■■□□□ 1.16
SS18-209ENST00000578595 GPRASP2Q96D09 838 aa22.27■■□□□ 1.16
SS18-209ENST00000578595 CDHR1Q96JP9 859 aa22.27■■□□□ 1.16
SS18-209ENST00000578595 TOX2Q96NM4 488 aa22.27■■□□□ 1.16
SS18-209ENST00000578595 ZMYND12Q9H0C1 365 aa22.27■■□□□ 1.16
SS18-209ENST00000578595 TRIM43BA6NCK2 446 aa22.26■■□□□ 1.15
SS18-209ENST00000578595 SPATA31C2B4DYI2 1134 aa22.26■■□□□ 1.15
SS18-209ENST00000578595 ICAM3P32942 547 aa22.26■■□□□ 1.15
SS18-209ENST00000578595 CDK7P50613 346 aa22.26■■□□□ 1.15
SS18-209ENST00000578595 FAAP100Q0VG06 881 aa22.26■■□□□ 1.15
SS18-209ENST00000578595 NBPF20Q3BBV1 942 aa22.26■■□□□ 1.15
SS18-209ENST00000578595 MYSM1Q5VVJ2 828 aa22.26■■□□□ 1.15
SS18-209ENST00000578595 RASGRP4Q8TDF6 673 aa22.26■■□□□ 1.15
SS18-209ENST00000578595 BADQ92934 168 aa22.26■■□□□ 1.15
SS18-209ENST00000578595 EMID1Q96A84 441 aaPredicted RBP22.26■■□□□ 1.15
SS18-209ENST00000578595 TRIM43Q96BQ3 446 aaPredicted RBP22.26■■□□□ 1.15
SS18-209ENST00000578595 ALG1Q9BT22 464 aa22.26■■□□□ 1.15
SS18-209ENST00000578595 PPP1R12CQ9BZL4 782 aa22.26■■□□□ 1.15
SS18-209ENST00000578595 LARGE1O95461 756 aa22.25■■□□□ 1.15
SS18-209ENST00000578595 SEMA3FQ13275 785 aa22.25■■□□□ 1.15
SS18-209ENST00000578595 HSDL1Q3SXM5 330 aa22.25■■□□□ 1.15
SS18-209ENST00000578595 HABP4Q5JVS0 413 aaKnown RBP22.25■■□□□ 1.15
SS18-209ENST00000578595 TEX2Q8IWB9 1127 aa22.25■■□□□ 1.15
SS18-209ENST00000578595 IL17RAQ96F46 866 aa22.25■■□□□ 1.15
SS18-209ENST00000578595 AIFM3Q96NN9 605 aa22.25■■□□□ 1.15
SS18-209ENST00000578595 GDF15Q99988 308 aa22.25■■□□□ 1.15
SS18-209ENST00000578595 NOD1Q9Y239 953 aa22.25■■□□□ 1.15
SS18-209ENST00000578595 GRIN2DO15399 1336 aa22.25■■□□□ 1.15
SS18-209ENST00000578595 CLK2P49760 499 aaKnown RBP22.24■■□□□ 1.15
SS18-209ENST00000578595 ME3Q16798 604 aa22.24■■□□□ 1.15
SS18-209ENST00000578595 MCTP2Q6DN12 878 aa22.24■■□□□ 1.15
SS18-209ENST00000578595 KATNAL1Q9BW62 490 aa22.24■■□□□ 1.15
SS18-209ENST00000578595 SEZ6LQ9BYH1 1024 aa22.24■■□□□ 1.15
SS18-209ENST00000578595 TRPV6Q9H1D0 765 aa22.24■■□□□ 1.15
SS18-209ENST00000578595 SH3GLB2Q9NR46 395 aa22.24■■□□□ 1.15
SS18-209ENST00000578595 UBIAD1Q9Y5Z9 338 aa22.24■■□□□ 1.15
SS18-209ENST00000578595 KIAA0355O15063 1070 aa22.23■■□□□ 1.15
SS18-209ENST00000578595 B4GALT4O60513 344 aa22.23■■□□□ 1.15
SS18-209ENST00000578595 XBP1P17861 261 aa22.23■■□□□ 1.15
SS18-209ENST00000578595 ITGB5P18084 799 aa22.23■■□□□ 1.15
SS18-209ENST00000578595 SREBF1P36956 1147 aa22.23■■□□□ 1.15
SS18-209ENST00000578595 ARHGAP4P98171 946 aa22.23■■□□□ 1.15
SS18-209ENST00000578595 METTL7BQ6UX53 244 aa22.23■■□□□ 1.15
SS18-209ENST00000578595 GIMAP8Q8ND71 665 aaPredicted RBP22.23■■□□□ 1.15
SS18-209ENST00000578595 GTF3C6Q969F1 213 aa22.23■■□□□ 1.15
SS18-209ENST00000578595 MXRA8Q9BRK3 442 aa22.23■■□□□ 1.15
SS18-209ENST00000578595 BCAS3Q9H6U6 928 aa22.23■■□□□ 1.15
SS18-209ENST00000578595 JADE2Q9NQC1 790 aa22.23■■□□□ 1.15
SS18-209ENST00000578595 TRMT13Q9NUP7 481 aaKnown RBP22.23■■□□□ 1.15
SS18-209ENST00000578595 ORC3Q9UBD5 711 aaPredicted RBP22.23■■□□□ 1.15
SS18-209ENST00000578595 STK36Q9NRP7 1315 aa22.23■■□□□ 1.15
SS18-209ENST00000578595 MYH9P35579 1960 aaKnown RBP22.22■■□□□ 1.15
SS18-209ENST00000578595 PSEN2P49810 448 aa22.22■■□□□ 1.15
SS18-209ENST00000578595 FOSBP53539 338 aa22.22■■□□□ 1.15
SS18-209ENST00000578595 MFSD10Q14728 455 aa22.22■■□□□ 1.15
SS18-209ENST00000578595 UTP14CQ5TAP6 766 aaKnown RBP22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms