RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, human

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS53-215	ENST00000573028	KCNMA1	Q12791	1236 aa		18.88	■□□□□ 0.61
VPS53-215	ENST00000573028	SEMA3F	Q13275	785 aa		18.88	■□□□□ 0.61
VPS53-215	ENST00000573028	ECM1	Q16610	540 aa		18.88	■□□□□ 0.61
VPS53-215	ENST00000573028	SLC9C1	Q4G0N8	1177 aa		18.88	■□□□□ 0.61
VPS53-215	ENST00000573028	KLHDC7A	Q5VTJ3	777 aa		18.88	■□□□□ 0.61
VPS53-215	ENST00000573028	LRRC55	Q6ZSA7	311 aa		18.88	■□□□□ 0.61
VPS53-215	ENST00000573028	ZNF804A	Q7Z570	1209 aa		18.88	■□□□□ 0.61
VPS53-215	ENST00000573028	PACS2	Q86VP3	889 aa		18.88	■□□□□ 0.61
VPS53-215	ENST00000573028	DNAAF5	Q86Y56	855 aa		18.88	■□□□□ 0.61
VPS53-215	ENST00000573028	FGFBP2	Q9BYJ0	223 aa		18.88	■□□□□ 0.61
VPS53-215	ENST00000573028	STK17A	Q9UEE5	414 aa		18.88	■□□□□ 0.61
VPS53-215	ENST00000573028	NARF	Q9UHQ1	456 aa		18.88	■□□□□ 0.61
VPS53-215	ENST00000573028	TM4SF1	P30408	202 aa		18.87	■□□□□ 0.61
VPS53-215	ENST00000573028	CORO7	P57737	925 aa		18.87	■□□□□ 0.61
VPS53-215	ENST00000573028	SFMBT2	Q5VUG0	894 aa		18.87	■□□□□ 0.61
VPS53-215	ENST00000573028	MTMR9	Q96QG7	549 aa		18.87	■□□□□ 0.61
VPS53-215	ENST00000573028	RTFDC1	Q9BY42	306 aa	Predicted RBP	18.87	■□□□□ 0.61
VPS53-215	ENST00000573028	NPHP3-ACAD11	A0A0J9YXS1	232 aa		18.87	■□□□□ 0.61
VPS53-215	ENST00000573028	PVALEF	A0A1B0GWK0	134 aa		18.87	■□□□□ 0.61
VPS53-215	ENST00000573028		F8W031	263 aa	Predicted RBP	18.87	■□□□□ 0.61
VPS53-215	ENST00000573028	GLI1	P08151	1106 aa		18.87	■□□□□ 0.61
VPS53-215	ENST00000573028	SLC16A2	P36021	539 aa		18.87	■□□□□ 0.61
VPS53-215	ENST00000573028	EPS15	P42566	896 aa		18.87	■□□□□ 0.61
VPS53-215	ENST00000573028	LIG3	P49916	1009 aa		18.87	■□□□□ 0.61
VPS53-215	ENST00000573028	PDCL	Q13371	301 aa		18.87	■□□□□ 0.61
VPS53-215	ENST00000573028	CFAP221	Q4G0U5	840 aa		18.87	■□□□□ 0.61
VPS53-215	ENST00000573028	FAM83B	Q5T0W9	1011 aa		18.87	■□□□□ 0.61
VPS53-215	ENST00000573028	AMIGO3	Q86WK7	504 aa		18.87	■□□□□ 0.61
VPS53-215	ENST00000573028	ADAMTS1	Q9UHI8	967 aa		18.87	■□□□□ 0.61
VPS53-215	ENST00000573028	OPA1	O60313	960 aa		18.87	■□□□□ 0.61
VPS53-215	ENST00000573028	HEXIM1	O94992	359 aa	Known RBP	18.87	■□□□□ 0.61
VPS53-215	ENST00000573028	LRRC63	Q05C16	580 aa		18.87	■□□□□ 0.61
VPS53-215	ENST00000573028	PPFIA1	Q13136	1202 aa		18.87	■□□□□ 0.61
VPS53-215	ENST00000573028	CCDC43	Q96MW1	224 aa	Known RBP	18.87	■□□□□ 0.61
VPS53-215	ENST00000573028	KRT12	Q99456	494 aa		18.87	■□□□□ 0.61
VPS53-215	ENST00000573028	CENPH	Q9H3R5	247 aa		18.87	■□□□□ 0.61
VPS53-215	ENST00000573028	KIAA1551	Q9HCM1	1747 aa		18.86	■□□□□ 0.61
VPS53-215	ENST00000573028	EBAG9	O00559	213 aa		18.86	■□□□□ 0.61
VPS53-215	ENST00000573028	FAM153B	P0C7A2	387 aa		18.86	■□□□□ 0.61
VPS53-215	ENST00000573028	COASY	Q13057	564 aa		18.86	■□□□□ 0.61
VPS53-215	ENST00000573028	FAM153C	Q494X1	144 aa		18.86	■□□□□ 0.61
VPS53-215	ENST00000573028	KLHL7	Q8IXQ5	586 aa		18.86	■□□□□ 0.61
VPS53-215	ENST00000573028	GOLPH3	Q9H4A6	298 aa		18.86	■□□□□ 0.61
VPS53-215	ENST00000573028	PANK4	Q9NVE7	773 aa		18.86	■□□□□ 0.61
VPS53-215	ENST00000573028	FAM153A	Q9UHL3	310 aa		18.86	■□□□□ 0.61
VPS53-215	ENST00000573028	COL4A3BP	Q9Y5P4	624 aa		18.86	■□□□□ 0.61
VPS53-215	ENST00000573028		E9PMD0	336 aa		18.86	■□□□□ 0.61
VPS53-215	ENST00000573028	UFL1	O94874	794 aa		18.86	■□□□□ 0.61
VPS53-215	ENST00000573028	KRT18	P05783	430 aa	Known RBP	18.86	■□□□□ 0.61
VPS53-215	ENST00000573028	KLRC1	P26715	233 aa		18.86	■□□□□ 0.61
VPS53-215	ENST00000573028	KIAA0753	Q2KHM9	967 aa		18.86	■□□□□ 0.61
VPS53-215	ENST00000573028	FAM26F	Q5R3K3	315 aa		18.86	■□□□□ 0.61
VPS53-215	ENST00000573028	C16orf86	Q6ZW13	317 aa		18.86	■□□□□ 0.61
VPS53-215	ENST00000573028	FAM133A	Q8N9E0	248 aa		18.86	■□□□□ 0.61
VPS53-215	ENST00000573028	PROCA1	Q8NCQ7	364 aa	Predicted RBP	18.86	■□□□□ 0.61
VPS53-215	ENST00000573028	PACSIN1	Q9BY11	444 aa		18.86	■□□□□ 0.61
VPS53-215	ENST00000573028	PDHB	P11177	359 aa		18.85	■□□□□ 0.61
VPS53-215	ENST00000573028	TRADD	Q15628	312 aa		18.85	■□□□□ 0.61
VPS53-215	ENST00000573028	HGSNAT	Q68CP4	663 aa		18.85	■□□□□ 0.61
VPS53-215	ENST00000573028	ZIM3	Q96PE6	472 aa		18.85	■□□□□ 0.61
VPS53-215	ENST00000573028	SHTN1	A0MZ66	631 aa		18.85	■□□□□ 0.61
VPS53-215	ENST00000573028	TLR2	O60603	784 aa		18.85	■□□□□ 0.61
VPS53-215	ENST00000573028	PPP4C	P60510	307 aa		18.85	■□□□□ 0.61
VPS53-215	ENST00000573028	FKBP3	Q00688	224 aa	Known RBP	18.85	■□□□□ 0.61
VPS53-215	ENST00000573028	TTMP	Q5BVD1	217 aa		18.85	■□□□□ 0.61
VPS53-215	ENST00000573028	HERC4	Q5GLZ8	1057 aa	Predicted RBP	18.85	■□□□□ 0.61
VPS53-215	ENST00000573028	MFSD14B	Q5SR56	506 aa		18.85	■□□□□ 0.61
VPS53-215	ENST00000573028	IQCD	Q96DY2	449 aa		18.85	■□□□□ 0.61
VPS53-215	ENST00000573028	BMP2K	Q9NSY1	1161 aa	Predicted RBP	18.85	■□□□□ 0.61
VPS53-215	ENST00000573028	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	18.85	■□□□□ 0.61
VPS53-215	ENST00000573028	LAMB1	P07942	1786 aa		18.85	■□□□□ 0.61
VPS53-215	ENST00000573028	CFAP58	Q5T655	872 aa		18.85	■□□□□ 0.61
VPS53-215	ENST00000573028	TTBK2	Q6IQ55	1244 aa		18.85	■□□□□ 0.61
VPS53-215	ENST00000573028	PPM1E	Q8WY54	764 aa		18.85	■□□□□ 0.61
VPS53-215	ENST00000573028	DDX25	Q9UHL0	483 aa	Known RBP	18.85	■□□□□ 0.61
VPS53-215	ENST00000573028	KIAA1024	Q9UPX6	916 aa		18.85	■□□□□ 0.61
VPS53-215	ENST00000573028	GOLGA8K	D6RF30	607 aa		18.84	■□□□□ 0.61
VPS53-215	ENST00000573028	PRLR	P16471	622 aa		18.84	■□□□□ 0.61
VPS53-215	ENST00000573028	ROBO3	Q96MS0	1386 aa		18.84	■□□□□ 0.61
VPS53-215	ENST00000573028	FXR2	P51116	673 aa	Known RBP eCLIP	18.84	■□□□□ 0.61
VPS53-215	ENST00000573028	KLHL30	Q0D2K2	578 aa		18.84	■□□□□ 0.61
VPS53-215	ENST00000573028	EMB	Q6PCB8	327 aa		18.84	■□□□□ 0.61
VPS53-215	ENST00000573028	DPP8	Q6V1X1	898 aa	Predicted RBP	18.84	■□□□□ 0.61
VPS53-215	ENST00000573028	IFT20	Q8IY31	132 aa		18.84	■□□□□ 0.61
VPS53-215	ENST00000573028	RTCB	Q9Y3I0	505 aa	Known RBP	18.84	■□□□□ 0.61
VPS53-215	ENST00000573028	COL14A1	Q05707	1796 aa	Known RBP	18.84	■□□□□ 0.61
VPS53-215	ENST00000573028		A0A087X0T9	212 aa		18.83	■□□□□ 0.61
VPS53-215	ENST00000573028	FAM228B	P0C875	321 aa		18.83	■□□□□ 0.61
VPS53-215	ENST00000573028	HLTF	Q14527	1009 aa	Known RBP eCLIP	18.83	■□□□□ 0.61
VPS53-215	ENST00000573028	ARHGEF1	Q92888	912 aa	Known RBP	18.83	■□□□□ 0.61
VPS53-215	ENST00000573028	PCDHA12	Q9UN75	941 aa		18.83	■□□□□ 0.61
VPS53-215	ENST00000573028	SNED1	Q8TER0	1413 aa		18.83	■□□□□ 0.61
VPS53-215	ENST00000573028	EDIL3	O43854	480 aa		18.83	■□□□□ 0.61
VPS53-215	ENST00000573028	NOP2	P46087	812 aa	Known RBP	18.83	■□□□□ 0.61
VPS53-215	ENST00000573028	NNT	Q13423	1086 aa		18.83	■□□□□ 0.61
VPS53-215	ENST00000573028	CD209	Q9NNX6	404 aa		18.83	■□□□□ 0.61
VPS53-215	ENST00000573028	THRAP3	Q9Y2W1	955 aa	Known RBP	18.83	■□□□□ 0.61
VPS53-215	ENST00000573028	MPHOSPH10	O00566	681 aa	Known RBP	18.83	■□□□□ 0.6
VPS53-215	ENST00000573028	LCA5L	O95447	670 aa		18.83	■□□□□ 0.6
VPS53-215	ENST00000573028	SLURP2	P0DP57	97 aa		18.83	■□□□□ 0.6

Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms