RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 RNF216Q9NWF9 866 aaPredicted RBP11.05□□□□□ -0.64
VPS53-206ENST00000570359 BCS1LQ9Y276 419 aa11.05□□□□□ -0.64
VPS53-206ENST00000570359 BICDL2A1A5D9 508 aa11.05□□□□□ -0.64
VPS53-206ENST00000570359 ZBTB39O15060 712 aa11.05□□□□□ -0.64
VPS53-206ENST00000570359 HDLBPQ00341 1268 aaKnown RBP11.05□□□□□ -0.64
VPS53-206ENST00000570359 CYP27A1Q02318 531 aa11.05□□□□□ -0.64
VPS53-206ENST00000570359 CXCL9Q07325 125 aa11.05□□□□□ -0.64
VPS53-206ENST00000570359 CTTNQ14247 550 aaKnown RBP11.05□□□□□ -0.64
VPS53-206ENST00000570359 TBC1D10BQ4KMP7 808 aaPredicted RBP11.05□□□□□ -0.64
VPS53-206ENST00000570359 PPP4R3AQ6IN85 833 aa11.05□□□□□ -0.64
VPS53-206ENST00000570359 UNC13DQ70J99 1090 aa11.05□□□□□ -0.64
VPS53-206ENST00000570359 MAEAQ7L5Y9 396 aa11.05□□□□□ -0.64
VPS53-206ENST00000570359 DHTKD1Q96HY7 919 aaPredicted RBP11.05□□□□□ -0.64
VPS53-206ENST00000570359 TNS1Q9HBL0 1735 aaKnown RBP11.04□□□□□ -0.64
VPS53-206ENST00000570359 ENTPD3O75355 529 aa11.04□□□□□ -0.64
VPS53-206ENST00000570359 PRKG1Q13976 671 aa11.04□□□□□ -0.64
VPS53-206ENST00000570359 CCDC40Q4G0X9 1142 aa11.04□□□□□ -0.64
VPS53-206ENST00000570359 FBXO38Q6PIJ6 1188 aa11.04□□□□□ -0.64
VPS53-206ENST00000570359 SAMD7Q7Z3H4 446 aa11.04□□□□□ -0.64
VPS53-206ENST00000570359 MKL1Q969V6 931 aa11.04□□□□□ -0.64
VPS53-206ENST00000570359 MTMR8Q96EF0 704 aa11.04□□□□□ -0.64
VPS53-206ENST00000570359 ERO1AQ96HE7 468 aa11.04□□□□□ -0.64
VPS53-206ENST00000570359 SH2D3AQ9BRG2 576 aa11.04□□□□□ -0.64
VPS53-206ENST00000570359 ZNF341Q9BYN7 854 aa11.04□□□□□ -0.64
VPS53-206ENST00000570359 IKZF4Q9H2S9 585 aa11.04□□□□□ -0.64
VPS53-206ENST00000570359 THAP9Q9H5L6 903 aa11.04□□□□□ -0.64
VPS53-206ENST00000570359 STK17AQ9UEE5 414 aa11.04□□□□□ -0.64
VPS53-206ENST00000570359 RSPH10B2B2RC85 870 aa11.04□□□□□ -0.64
VPS53-206ENST00000570359 ENC1O14682 589 aa11.04□□□□□ -0.64
VPS53-206ENST00000570359 OPLAHO14841 1288 aa11.04□□□□□ -0.64
VPS53-206ENST00000570359 EPHB6O15197 1021 aa11.04□□□□□ -0.64
VPS53-206ENST00000570359 KIF5CO60282 957 aa11.04□□□□□ -0.64
VPS53-206ENST00000570359 PLEKP08567 350 aaPredicted RBP11.04□□□□□ -0.64
VPS53-206ENST00000570359 RSPH10BP0C881 870 aa11.04□□□□□ -0.64
VPS53-206ENST00000570359 KCNA3P22001 575 aa11.04□□□□□ -0.64
VPS53-206ENST00000570359 EEF1GP26641 437 aaKnown RBP11.04□□□□□ -0.64
VPS53-206ENST00000570359 ARID5AQ03989 594 aa11.04□□□□□ -0.64
VPS53-206ENST00000570359 KIF4BQ2VIQ3 1234 aa11.04□□□□□ -0.64
VPS53-206ENST00000570359 CT47A1Q5JQC4 288 aaPredicted RBP11.04□□□□□ -0.64
VPS53-206ENST00000570359 FAM26FQ5R3K3 315 aa11.04□□□□□ -0.64
VPS53-206ENST00000570359 TPH2Q8IWU9 490 aa11.04□□□□□ -0.64
VPS53-206ENST00000570359 RTKN2Q8IZC4 609 aa11.04□□□□□ -0.64
VPS53-206ENST00000570359 SLC35F6Q8N357 371 aa11.04□□□□□ -0.64
VPS53-206ENST00000570359 NOC3LQ8WTT2 800 aaKnown RBP11.04□□□□□ -0.64
VPS53-206ENST00000570359 ANKRD7Q92527 254 aa11.04□□□□□ -0.64
VPS53-206ENST00000570359 ARFGEF1Q9Y6D6 1849 aa11.03□□□□□ -0.64
VPS53-206ENST00000570359 A0A0U1RQG5 324 aaPredicted RBP11.03□□□□□ -0.64
VPS53-206ENST00000570359 PLS1Q14651 629 aa11.03□□□□□ -0.64
VPS53-206ENST00000570359 FKBP15Q5T1M5 1219 aa11.03□□□□□ -0.64
VPS53-206ENST00000570359 CYP26C1Q6V0L0 522 aa11.03□□□□□ -0.64
VPS53-206ENST00000570359 CATSPER3Q86XQ3 398 aa11.03□□□□□ -0.64
VPS53-206ENST00000570359 UBXN4Q92575 508 aa11.03□□□□□ -0.64
VPS53-206ENST00000570359 DRC1Q96MC2 740 aa11.03□□□□□ -0.64
VPS53-206ENST00000570359 AGBL1Q96MI9 1066 aa11.03□□□□□ -0.64
VPS53-206ENST00000570359 CCDC94Q9BW85 323 aaPredicted RBP11.03□□□□□ -0.64
VPS53-206ENST00000570359 NLRC4Q9NPP4 1024 aa11.03□□□□□ -0.64
VPS53-206ENST00000570359 ABCB11O95342 1321 aa11.03□□□□□ -0.64
VPS53-206ENST00000570359 CNTNAP1P78357 1384 aa11.03□□□□□ -0.64
VPS53-206ENST00000570359 WNT10BO00744 389 aa11.03□□□□□ -0.64
VPS53-206ENST00000570359 MSH4O15457 936 aa11.03□□□□□ -0.64
VPS53-206ENST00000570359 SORBS3O60504 671 aa11.03□□□□□ -0.64
VPS53-206ENST00000570359 CASP5P51878 434 aa11.03□□□□□ -0.64
VPS53-206ENST00000570359 RASSF7Q02833 373 aa11.03□□□□□ -0.64
VPS53-206ENST00000570359 PDIA5Q14554 519 aa11.03□□□□□ -0.64
VPS53-206ENST00000570359 TMEM119Q4V9L6 283 aa11.03□□□□□ -0.64
VPS53-206ENST00000570359 KSR1Q8IVT5 923 aa11.03□□□□□ -0.64
VPS53-206ENST00000570359 MYOCDQ8IZQ8 938 aa11.03□□□□□ -0.64
VPS53-206ENST00000570359 FAM151AQ8WW52 585 aa11.03□□□□□ -0.64
VPS53-206ENST00000570359 JDP2Q8WYK2 163 aa11.03□□□□□ -0.64
VPS53-206ENST00000570359 BHMT2Q9H2M3 363 aa11.03□□□□□ -0.64
VPS53-206ENST00000570359 MAGEF1Q9HAY2 307 aa11.03□□□□□ -0.64
VPS53-206ENST00000570359 GOPCQ9HD26 462 aa11.03□□□□□ -0.64
VPS53-206ENST00000570359 PHLPP2Q6ZVD8 1323 aa11.03□□□□□ -0.64
VPS53-206ENST00000570359 MACROD2A1Z1Q3 448 aa11.02□□□□□ -0.64
VPS53-206ENST00000570359 EML1O00423 815 aa11.02□□□□□ -0.64
VPS53-206ENST00000570359 MYL1P05976 194 aa11.02□□□□□ -0.64
VPS53-206ENST00000570359 GCFC2P16383 781 aaKnown RBP11.02□□□□□ -0.64
VPS53-206ENST00000570359 KCNJ6P48051 423 aa11.02□□□□□ -0.64
VPS53-206ENST00000570359 PPP2R3AQ06190 1150 aa11.02□□□□□ -0.64
VPS53-206ENST00000570359 RASA3Q14644 834 aa11.02□□□□□ -0.64
VPS53-206ENST00000570359 KRT26Q7Z3Y9 468 aa11.02□□□□□ -0.64
VPS53-206ENST00000570359 KIAA1328Q86T90 577 aa11.02□□□□□ -0.64
VPS53-206ENST00000570359 GMCL1P1Q8NEA9 526 aa11.02□□□□□ -0.64
VPS53-206ENST00000570359 OR8K1Q8NGG5 319 aa11.02□□□□□ -0.64
VPS53-206ENST00000570359 GMCL1Q96IK5 515 aa11.02□□□□□ -0.64
VPS53-206ENST00000570359 ZNRF3Q9ULT6 936 aa11.02□□□□□ -0.64
VPS53-206ENST00000570359 VIL1P09327 827 aaKnown RBP11.02□□□□□ -0.65
VPS53-206ENST00000570359 DNM2P50570 870 aa11.02□□□□□ -0.65
VPS53-206ENST00000570359 SPDYE2Q495Y8 402 aa11.02□□□□□ -0.65
VPS53-206ENST00000570359 MIIPQ5JXC2 388 aa11.02□□□□□ -0.65
VPS53-206ENST00000570359 DNAJC19Q96DA6 116 aa11.02□□□□□ -0.65
VPS53-206ENST00000570359 TSG101Q99816 390 aa11.02□□□□□ -0.65
VPS53-206ENST00000570359 KCND1Q9NSA2 647 aa11.02□□□□□ -0.65
VPS53-206ENST00000570359 LRRC10BA6NIK2 292 aa11.01□□□□□ -0.65
VPS53-206ENST00000570359 PRPF6O94906 941 aaKnown RBP11.01□□□□□ -0.65
VPS53-206ENST00000570359 KIF20AO95235 890 aa11.01□□□□□ -0.65
VPS53-206ENST00000570359 CYP11B2P19099 503 aa11.01□□□□□ -0.65
VPS53-206ENST00000570359 DNA2P51530 1060 aa11.01□□□□□ -0.65
VPS53-206ENST00000570359 FKBP1AP62942 108 aaKnown RBP11.01□□□□□ -0.65
VPS53-206ENST00000570359 SFR1Q86XK3 245 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms