RNA–Protein interactions for RNA: ENST00000569245.5

COMMD4-225, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-225ENST00000569245 WWC2Q6AWC2 1192 aa16.6■□□□□ 0.25
COMMD4-225ENST00000569245 SPATA33Q96N06 139 aa16.6■□□□□ 0.25
COMMD4-225ENST00000569245 MLXIPQ9HAP2 919 aa16.6■□□□□ 0.25
COMMD4-225ENST00000569245 FAM217BQ9NTX9 383 aaPredicted RBP16.6■□□□□ 0.25
COMMD4-225ENST00000569245 LIMCH1Q9UPQ0 1083 aa16.6■□□□□ 0.25
COMMD4-225ENST00000569245 B4GALT4O60513 344 aa16.59■□□□□ 0.25
COMMD4-225ENST00000569245 GGPS1O95749 300 aa16.59■□□□□ 0.25
COMMD4-225ENST00000569245 SUPT20HL2P0C7V6 817 aa16.59■□□□□ 0.25
COMMD4-225ENST00000569245 EVCP57679 992 aa16.59■□□□□ 0.25
COMMD4-225ENST00000569245 MRPS9P82933 396 aaKnown RBP16.59■□□□□ 0.25
COMMD4-225ENST00000569245 FUT2Q10981 343 aa16.59■□□□□ 0.25
COMMD4-225ENST00000569245 SHHQ15465 462 aa16.59■□□□□ 0.25
COMMD4-225ENST00000569245 LRIT3Q3SXY7 679 aa16.59■□□□□ 0.25
COMMD4-225ENST00000569245 CELF3Q5SZQ8 465 aaKnown RBP16.59■□□□□ 0.25
COMMD4-225ENST00000569245 MFSD5Q6N075 450 aa16.59■□□□□ 0.25
COMMD4-225ENST00000569245 TMEM199Q8N511 208 aa16.59■□□□□ 0.25
COMMD4-225ENST00000569245 PPP1R13LQ8WUF5 828 aa16.59■□□□□ 0.25
COMMD4-225ENST00000569245 EMID1Q96A84 441 aaPredicted RBP16.59■□□□□ 0.25
COMMD4-225ENST00000569245 LRCH3Q96II8 777 aa16.59■□□□□ 0.25
COMMD4-225ENST00000569245 ZSCAN31Q96LW9 406 aaPredicted RBP16.59■□□□□ 0.25
COMMD4-225ENST00000569245 HIPK3Q9H422 1215 aa16.59■□□□□ 0.25
COMMD4-225ENST00000569245 UBA1P22314 1058 aaKnown RBP16.58■□□□□ 0.24
COMMD4-225ENST00000569245 CYP2C18P33260 490 aa16.58■□□□□ 0.24
COMMD4-225ENST00000569245 AKAP17AQ02040 695 aaKnown RBP16.58■□□□□ 0.24
COMMD4-225ENST00000569245 C9orf50Q5SZB4 431 aa16.58■□□□□ 0.24
COMMD4-225ENST00000569245 MYSM1Q5VVJ2 828 aa16.58■□□□□ 0.24
COMMD4-225ENST00000569245 PCNX4Q63HM2 1172 aa16.58■□□□□ 0.24
COMMD4-225ENST00000569245 XRRA1Q6P2D8 792 aa16.58■□□□□ 0.24
COMMD4-225ENST00000569245 NFRKBQ6P4R8 1299 aa16.58■□□□□ 0.24
COMMD4-225ENST00000569245 PPTC7Q8NI37 304 aa16.58■□□□□ 0.24
COMMD4-225ENST00000569245 EHMT1Q9H9B1 1298 aa16.58■□□□□ 0.24
COMMD4-225ENST00000569245 TRMT13Q9NUP7 481 aaKnown RBP16.58■□□□□ 0.24
COMMD4-225ENST00000569245 NOD1Q9Y239 953 aa16.58■□□□□ 0.24
COMMD4-225ENST00000569245 FRMPD4Q14CM0 1322 aa16.58■□□□□ 0.24
COMMD4-225ENST00000569245 SMCO2A6NFE2 343 aa16.57■□□□□ 0.24
COMMD4-225ENST00000569245 SPATA31C2B4DYI2 1134 aa16.57■□□□□ 0.24
COMMD4-225ENST00000569245 STXBP3O00186 592 aa16.57■□□□□ 0.24
COMMD4-225ENST00000569245 ADCY7P51828 1080 aa16.57■□□□□ 0.24
COMMD4-225ENST00000569245 EPHB4P54760 987 aa16.57■□□□□ 0.24
COMMD4-225ENST00000569245 SP2Q02086 613 aa16.57■□□□□ 0.24
COMMD4-225ENST00000569245 PPIGQ13427 754 aaKnown RBP eCLIP16.57■□□□□ 0.241e-6■■■■□ 26.6
COMMD4-225ENST00000569245 PPP1R18Q6NYC8 613 aa16.57■□□□□ 0.24
COMMD4-225ENST00000569245 NLRX1Q86UT6 975 aa16.57■□□□□ 0.24
COMMD4-225ENST00000569245 TMX3Q96JJ7 454 aa16.57■□□□□ 0.24
COMMD4-225ENST00000569245 INPP4AQ96PE3 977 aaPredicted RBP16.57■□□□□ 0.24
COMMD4-225ENST00000569245 RIC8AQ9NPQ8 531 aa16.57■□□□□ 0.24
COMMD4-225ENST00000569245 SH2B1Q9NRF2 756 aaPredicted RBP16.57■□□□□ 0.24
COMMD4-225ENST00000569245 BARHL2Q9NY43 387 aa16.57■□□□□ 0.24
COMMD4-225ENST00000569245 TPCN1Q9ULQ1 816 aa16.57■□□□□ 0.24
COMMD4-225ENST00000569245 PCDHA6Q9UN73 950 aa16.57■□□□□ 0.24
COMMD4-225ENST00000569245 PCDHA8Q9Y5H6 950 aa16.57■□□□□ 0.24
COMMD4-225ENST00000569245 LAMA2P24043 3122 aaKnown RBP16.56■□□□□ 0.24
COMMD4-225ENST00000569245 SZT2Q5T011 3432 aa16.56■□□□□ 0.24
COMMD4-225ENST00000569245 hCG_1984214I3L0E3 225 aa16.56■□□□□ 0.24
COMMD4-225ENST00000569245 NOP56O00567 594 aaKnown RBP16.56■□□□□ 0.24
COMMD4-225ENST00000569245 FIBPO43427 364 aa16.56■□□□□ 0.24
COMMD4-225ENST00000569245 PPFIA4O75335 1185 aa16.56■□□□□ 0.24
COMMD4-225ENST00000569245 ZNF286BP0CG31 522 aa16.56■□□□□ 0.24
COMMD4-225ENST00000569245 CYP2C9P11712 490 aa16.56■□□□□ 0.24
COMMD4-225ENST00000569245 CSF2RAP15509 400 aa16.56■□□□□ 0.24
COMMD4-225ENST00000569245 PDIA3P30101 505 aaKnown RBP16.56■□□□□ 0.24
COMMD4-225ENST00000569245 CCL23P55773 120 aa16.56■□□□□ 0.24
COMMD4-225ENST00000569245 CCT2P78371 535 aaKnown RBP16.56■□□□□ 0.24
COMMD4-225ENST00000569245 NEDD9Q14511 834 aa16.56■□□□□ 0.24
COMMD4-225ENST00000569245 ZNF713Q8N859 430 aaPredicted RBP16.56■□□□□ 0.24
COMMD4-225ENST00000569245 C7orf31Q8N865 590 aa16.56■□□□□ 0.24
COMMD4-225ENST00000569245 ZNF274Q96GC6 653 aaPredicted RBP16.56■□□□□ 0.24
COMMD4-225ENST00000569245 RNPC3Q96LT9 517 aaKnown RBP16.56■□□□□ 0.24
COMMD4-225ENST00000569245 ALG1Q9BT22 464 aa16.56■□□□□ 0.24
COMMD4-225ENST00000569245 PPFIA3O75145 1194 aa16.55■□□□□ 0.24
COMMD4-225ENST00000569245 SCG2P13521 617 aa16.55■□□□□ 0.24
COMMD4-225ENST00000569245 ICAM3P32942 547 aa16.55■□□□□ 0.24
COMMD4-225ENST00000569245 PTPN11Q06124 597 aaPredicted RBP16.55■□□□□ 0.24
COMMD4-225ENST00000569245 CUL4AQ13619 759 aa16.55■□□□□ 0.24
COMMD4-225ENST00000569245 PFKFB3Q16875 520 aaPredicted RBP16.55■□□□□ 0.24
COMMD4-225ENST00000569245 HSDL1Q3SXM5 330 aa16.55■□□□□ 0.24
COMMD4-225ENST00000569245 TYW1BQ6NUM6 668 aa16.55■□□□□ 0.24
COMMD4-225ENST00000569245 CYFIP1Q7L576 1253 aa16.55■□□□□ 0.24
COMMD4-225ENST00000569245 KAT2BQ92831 832 aa16.55■□□□□ 0.24
COMMD4-225ENST00000569245 PHKBQ93100 1093 aa16.55■□□□□ 0.24
COMMD4-225ENST00000569245 LARP6Q9BRS8 491 aaKnown RBP16.55■□□□□ 0.24
COMMD4-225ENST00000569245 NOC4LQ9BVI4 516 aaKnown RBP16.55■□□□□ 0.24
COMMD4-225ENST00000569245 KATNAL1Q9BW62 490 aa16.55■□□□□ 0.24
COMMD4-225ENST00000569245 SLC26A6Q9BXS9 759 aa16.55■□□□□ 0.24
COMMD4-225ENST00000569245 GLT8D2Q9H1C3 349 aa16.55■□□□□ 0.24
COMMD4-225ENST00000569245 NCOA5Q9HCD5 579 aaKnown RBP16.55■□□□□ 0.24
COMMD4-225ENST00000569245 UMODL1Q5DID0 1318 aa16.54■□□□□ 0.24
COMMD4-225ENST00000569245 PRPF3O43395 683 aaKnown RBP16.54■□□□□ 0.24
COMMD4-225ENST00000569245 FOSP01100 380 aaPredicted RBP16.54■□□□□ 0.24
COMMD4-225ENST00000569245 ACRP10323 421 aa16.54■□□□□ 0.24
COMMD4-225ENST00000569245 PSEN2P49810 448 aa16.54■□□□□ 0.24
COMMD4-225ENST00000569245 SP4Q02446 784 aa16.54■□□□□ 0.24
COMMD4-225ENST00000569245 MFSD10Q14728 455 aa16.54■□□□□ 0.24
COMMD4-225ENST00000569245 ME3Q16798 604 aa16.54■□□□□ 0.24
COMMD4-225ENST00000569245 KIAA0753Q2KHM9 967 aa16.54■□□□□ 0.24
COMMD4-225ENST00000569245 CCDC12Q8WUD4 166 aaPredicted RBP16.54■□□□□ 0.24
COMMD4-225ENST00000569245 CDHR1Q96JP9 859 aa16.54■□□□□ 0.24
COMMD4-225ENST00000569245 PGBD1Q96JS3 809 aa16.54■□□□□ 0.24
COMMD4-225ENST00000569245 BCAS3Q9H6U6 928 aa16.54■□□□□ 0.24
COMMD4-225ENST00000569245 DAXXQ9UER7 740 aaPredicted RBP16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms