RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 RNPC3Q96LT9 517 aaKnown RBP15.95■□□□□ 0.14
VPS35-210ENST00000568784 CCDC114Q96M63 670 aa15.95■□□□□ 0.14
VPS35-210ENST00000568784 TTMPQ5BVD1 217 aa15.95■□□□□ 0.14
VPS35-210ENST00000568784 B4GALNT4Q76KP1 1039 aa15.95■□□□□ 0.14
VPS35-210ENST00000568784 TLR10Q9BXR5 811 aa15.95■□□□□ 0.14
VPS35-210ENST00000568784 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.95■□□□□ 0.14
VPS35-210ENST00000568784 PLAAQ9Y263 795 aa15.95■□□□□ 0.14
VPS35-210ENST00000568784 ZNF335Q9H4Z2 1342 aaPredicted RBP15.95■□□□□ 0.14
VPS35-210ENST00000568784 E9PMD0 336 aa15.94■□□□□ 0.14
VPS35-210ENST00000568784 C6orf229H3BNL8 230 aa15.94■□□□□ 0.14
VPS35-210ENST00000568784 GNPATO15228 680 aa15.94■□□□□ 0.14
VPS35-210ENST00000568784 MYL1P05976 194 aa15.94■□□□□ 0.14
VPS35-210ENST00000568784 ACTN1P12814 892 aa15.94■□□□□ 0.14
VPS35-210ENST00000568784 BTDP43251 543 aa15.94■□□□□ 0.14
VPS35-210ENST00000568784 MMS22LQ6ZRQ5 1243 aa15.94■□□□□ 0.14
VPS35-210ENST00000568784 MICALCLQ6ZW33 695 aa15.94■□□□□ 0.14
VPS35-210ENST00000568784 MMGT1Q8N4V1 131 aa15.94■□□□□ 0.14
VPS35-210ENST00000568784 CEP95Q96GE4 821 aa15.94■□□□□ 0.14
VPS35-210ENST00000568784 CUEDC2Q9H467 287 aa15.94■□□□□ 0.14
VPS35-210ENST00000568784 BAZ2AQ9UIF9 1905 aaKnown RBP15.94■□□□□ 0.14
VPS35-210ENST00000568784 SLC37A4O43826 429 aa15.94■□□□□ 0.14
VPS35-210ENST00000568784 ADAM9Q13443 819 aa15.94■□□□□ 0.14
VPS35-210ENST00000568784 LLGL1Q15334 1064 aa15.94■□□□□ 0.14
VPS35-210ENST00000568784 FAM182BQ5T319 152 aa15.94■□□□□ 0.14
VPS35-210ENST00000568784 GBP6Q6ZN66 633 aa15.94■□□□□ 0.14
VPS35-210ENST00000568784 UNC13DQ70J99 1090 aa15.94■□□□□ 0.14
VPS35-210ENST00000568784 GPBP1Q86WP2 473 aa15.94■□□□□ 0.14
VPS35-210ENST00000568784 DDX47Q9H0S4 455 aaKnown RBP15.94■□□□□ 0.14
VPS35-210ENST00000568784 COL4A3BPQ9Y5P4 624 aa15.94■□□□□ 0.14
VPS35-210ENST00000568784 G3V3G9 751 aa15.94■□□□□ 0.14
VPS35-210ENST00000568784 MEIS1O00470 390 aa15.94■□□□□ 0.14
VPS35-210ENST00000568784 LDHCP07864 332 aa15.94■□□□□ 0.14
VPS35-210ENST00000568784 ABCB4P21439 1286 aa15.94■□□□□ 0.14
VPS35-210ENST00000568784 DCAF8Q5TAQ9 597 aa15.94■□□□□ 0.14
VPS35-210ENST00000568784 PDXDC1Q6P996 788 aa15.94■□□□□ 0.14
VPS35-210ENST00000568784 SH3GLB2Q9NR46 395 aa15.94■□□□□ 0.14
VPS35-210ENST00000568784 LAD1O00515 517 aa15.93■□□□□ 0.14
VPS35-210ENST00000568784 CDK8P49336 464 aa15.93■□□□□ 0.14
VPS35-210ENST00000568784 FKBP3Q00688 224 aaKnown RBP15.93■□□□□ 0.14
VPS35-210ENST00000568784 GRIK5Q16478 980 aa15.93■□□□□ 0.14
VPS35-210ENST00000568784 SCLT1Q96NL6 688 aa15.93■□□□□ 0.14
VPS35-210ENST00000568784 C7orf25Q9BPX7 421 aa15.93■□□□□ 0.14
VPS35-210ENST00000568784 PPP1R2P41236 205 aa15.93■□□□□ 0.14
VPS35-210ENST00000568784 CCDC121Q6ZUS5 278 aa15.93■□□□□ 0.14
VPS35-210ENST00000568784 KCNK18Q7Z418 384 aa15.93■□□□□ 0.14
VPS35-210ENST00000568784 JPH2Q9BR39 696 aaPredicted RBP15.93■□□□□ 0.14
VPS35-210ENST00000568784 ANKRD2Q9GZV1 360 aa15.93■□□□□ 0.14
VPS35-210ENST00000568784 PCDHA12Q9UN75 941 aa15.93■□□□□ 0.14
VPS35-210ENST00000568784 NID2Q14112 1375 aa15.93■□□□□ 0.14
VPS35-210ENST00000568784 GCOM1H8Y6P7 765 aaPredicted RBP15.93■□□□□ 0.14
VPS35-210ENST00000568784 MYZAPP0CAP1 466 aa15.93■□□□□ 0.14
VPS35-210ENST00000568784 KRT71Q3SY84 523 aa15.93■□□□□ 0.14
VPS35-210ENST00000568784 TPTE2Q6XPS3 522 aa15.93■□□□□ 0.14
VPS35-210ENST00000568784 TTYH3Q9C0H2 523 aa15.93■□□□□ 0.14
VPS35-210ENST00000568784 MYH7P12883 1935 aa15.92■□□□□ 0.14
VPS35-210ENST00000568784 A0A087X0T9 212 aa15.92■□□□□ 0.14
VPS35-210ENST00000568784 HGSO14964 777 aaPredicted RBP15.92■□□□□ 0.14
VPS35-210ENST00000568784 FAM228BP0C875 321 aa15.92■□□□□ 0.14
VPS35-210ENST00000568784 GRB10Q13322 594 aa15.92■□□□□ 0.14
VPS35-210ENST00000568784 ALS2CLQ60I27 953 aa15.92■□□□□ 0.14
VPS35-210ENST00000568784 CPLX4Q7Z7G2 160 aa15.92■□□□□ 0.14
VPS35-210ENST00000568784 PCDHB13Q9Y5F0 798 aa15.92■□□□□ 0.14
VPS35-210ENST00000568784 TJP1Q07157 1748 aa15.92■□□□□ 0.14
VPS35-210ENST00000568784 TMEM110-MUSTN1A8MSY1 372 aa15.92■□□□□ 0.14
VPS35-210ENST00000568784 SLC35G1Q2M3R5 365 aa15.92■□□□□ 0.14
VPS35-210ENST00000568784 KLHDC7AQ5VTJ3 777 aa15.92■□□□□ 0.14
VPS35-210ENST00000568784 FBXO33Q7Z6M2 555 aa15.92■□□□□ 0.14
VPS35-210ENST00000568784 SELENOSQ9BQE4 189 aa15.92■□□□□ 0.14
VPS35-210ENST00000568784 TNS2Q63HR2 1409 aa15.92■□□□□ 0.14
VPS35-210ENST00000568784 USP54Q70EL1 1684 aa15.92■□□□□ 0.14
VPS35-210ENST00000568784 MYH6P13533 1939 aa15.92■□□□□ 0.14
VPS35-210ENST00000568784 KRIT1O00522 736 aa15.92■□□□□ 0.14
VPS35-210ENST00000568784 RAD51CO43502 376 aa15.92■□□□□ 0.14
VPS35-210ENST00000568784 RPS6KA5O75582 802 aa15.92■□□□□ 0.14
VPS35-210ENST00000568784 CYP4A11Q02928 519 aa15.92■□□□□ 0.14
VPS35-210ENST00000568784 PEX26Q7Z412 305 aa15.92■□□□□ 0.14
VPS35-210ENST00000568784 CCDC65Q8IXS2 484 aa15.92■□□□□ 0.14
VPS35-210ENST00000568784 DDX25Q9UHL0 483 aaKnown RBP15.92■□□□□ 0.14
VPS35-210ENST00000568784 RIMBP2O15034 1052 aa15.91■□□□□ 0.14
VPS35-210ENST00000568784 CETN3O15182 167 aa15.91■□□□□ 0.14
VPS35-210ENST00000568784 GALNT17Q6IS24 598 aa15.91■□□□□ 0.14
VPS35-210ENST00000568784 DAAM2Q86T65 1068 aa15.91■□□□□ 0.14
VPS35-210ENST00000568784 CABS1Q96KC9 395 aa15.91■□□□□ 0.14
VPS35-210ENST00000568784 TMOD1P28289 359 aa15.91■□□□□ 0.14
VPS35-210ENST00000568784 COASYQ13057 564 aa15.91■□□□□ 0.14
VPS35-210ENST00000568784 KCTD1Q719H9 257 aa15.91■□□□□ 0.14
VPS35-210ENST00000568784 U2AF1L4Q8WU68 220 aaKnown RBP15.91■□□□□ 0.14
VPS35-210ENST00000568784 RASA1P20936 1047 aa15.91■□□□□ 0.14
VPS35-210ENST00000568784 NR2F2P24468 414 aa15.91■□□□□ 0.14
VPS35-210ENST00000568784 LSP1P33241 339 aa15.91■□□□□ 0.14
VPS35-210ENST00000568784 PABPC4Q13310 644 aaKnown RBP eCLIP15.91■□□□□ 0.145e-7■■■□□ 15
VPS35-210ENST00000568784 PLS1Q14651 629 aa15.91■□□□□ 0.14
VPS35-210ENST00000568784 ZSCAN29Q8IWY8 852 aaPredicted RBP15.91■□□□□ 0.14
VPS35-210ENST00000568784 WDR66Q8TBY9 1149 aa15.91■□□□□ 0.14
VPS35-210ENST00000568784 CASKIN2Q8WXE0 1202 aa15.91■□□□□ 0.14
VPS35-210ENST00000568784 MAGEF1Q9HAY2 307 aa15.91■□□□□ 0.14
VPS35-210ENST00000568784 LOC102724159A0A0B4J2E5 919 aa15.91■□□□□ 0.14
VPS35-210ENST00000568784 CLIC2O15247 247 aa15.91■□□□□ 0.14
VPS35-210ENST00000568784 UFL1O94874 794 aa15.91■□□□□ 0.14
VPS35-210ENST00000568784 GSTO1P78417 241 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms