RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 SEPT8Q92599 483 aa19.02■□□□□ 0.64
CLK3-223ENST00000568488 TAAR1Q96RJ0 339 aa19.02■□□□□ 0.64
CLK3-223ENST00000568488 TMEM47Q9BQJ4 181 aa19.02■□□□□ 0.64
CLK3-223ENST00000568488 FAM86C1Q9NVL1 165 aa19.02■□□□□ 0.64
CLK3-223ENST00000568488 DDX19BQ9UMR2 479 aa19.02■□□□□ 0.64
CLK3-223ENST00000568488 TOP1P11387 765 aaKnown RBP19.01■□□□□ 0.63
CLK3-223ENST00000568488 CTNNB1P35222 781 aa19.01■□□□□ 0.63
CLK3-223ENST00000568488 TCF15Q12870 199 aa19.01■□□□□ 0.63
CLK3-223ENST00000568488 MKRN4PQ13434 485 aaPredicted RBP19.01■□□□□ 0.63
CLK3-223ENST00000568488 CTC1Q2NKJ3 1217 aa19.01■□□□□ 0.63
CLK3-223ENST00000568488 PLEKHG4Q58EX7 1191 aa19.01■□□□□ 0.63
CLK3-223ENST00000568488 RRP12Q5JTH9 1297 aaKnown RBP19.01■□□□□ 0.63
CLK3-223ENST00000568488 TBC1D5Q92609 795 aa19.01■□□□□ 0.63
CLK3-223ENST00000568488 IFIH1Q9BYX4 1025 aaKnown RBP19.01■□□□□ 0.63
CLK3-223ENST00000568488 DDX41Q9UJV9 622 aaKnown RBP19.01■□□□□ 0.63
CLK3-223ENST00000568488 MICAL3Q7RTP6 2002 aa19■□□□□ 0.63
CLK3-223ENST00000568488 HAS3O00219 553 aa19■□□□□ 0.63
CLK3-223ENST00000568488 SORBS3O60504 671 aa19■□□□□ 0.63
CLK3-223ENST00000568488 F2P00734 622 aa19■□□□□ 0.63
CLK3-223ENST00000568488 NOVP48745 357 aa19■□□□□ 0.63
CLK3-223ENST00000568488 SMAD4Q13485 552 aaKnown RBP19■□□□□ 0.63
CLK3-223ENST00000568488 LAMC2Q13753 1193 aa19■□□□□ 0.63
CLK3-223ENST00000568488 HIC1Q14526 733 aa19■□□□□ 0.63
CLK3-223ENST00000568488 PKN1Q16512 942 aa19■□□□□ 0.63
CLK3-223ENST00000568488 FIBCD1Q8N539 461 aa19■□□□□ 0.63
CLK3-223ENST00000568488 NSUN6Q8TEA1 469 aaKnown RBP19■□□□□ 0.63
CLK3-223ENST00000568488 MRVI1Q9Y6F6 885 aa19■□□□□ 0.63
CLK3-223ENST00000568488 WDR19Q8NEZ3 1342 aa19■□□□□ 0.63
CLK3-223ENST00000568488 MYO7AQ13402 2215 aa18.99■□□□□ 0.63
CLK3-223ENST00000568488 CCER2I3L3R5 266 aa18.99■□□□□ 0.63
CLK3-223ENST00000568488 RGS22Q8NE09 1264 aa18.99■□□□□ 0.63
CLK3-223ENST00000568488 CD207Q9UJ71 328 aa18.99■□□□□ 0.63
CLK3-223ENST00000568488 TECTAO75443 2155 aa18.99■□□□□ 0.63
CLK3-223ENST00000568488 GRM6O15303 877 aa18.98■□□□□ 0.63
CLK3-223ENST00000568488 LINC01565O15544 149 aa18.98■□□□□ 0.63
CLK3-223ENST00000568488 CTSHP09668 335 aa18.98■□□□□ 0.63
CLK3-223ENST00000568488 PDHBP11177 359 aa18.98■□□□□ 0.63
CLK3-223ENST00000568488 GTF2F1P35269 517 aaKnown RBP eCLIP18.98■□□□□ 0.63
CLK3-223ENST00000568488 PPTC7Q8NI37 304 aa18.98■□□□□ 0.63
CLK3-223ENST00000568488 SYTL5Q8TDW5 730 aaPredicted RBP18.98■□□□□ 0.63
CLK3-223ENST00000568488 ATOH1Q92858 354 aaPredicted RBP18.98■□□□□ 0.63
CLK3-223ENST00000568488 ATP6V0A1Q93050 837 aa18.98■□□□□ 0.63
CLK3-223ENST00000568488 IL17RAQ96F46 866 aa18.98■□□□□ 0.63
CLK3-223ENST00000568488 RMDN3Q96TC7 470 aa18.98■□□□□ 0.63
CLK3-223ENST00000568488 FSD1Q9BTV5 496 aa18.98■□□□□ 0.63
CLK3-223ENST00000568488 CFAP54Q96N23 3096 aa18.98■□□□□ 0.63
CLK3-223ENST00000568488 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.97■□□□□ 0.63
CLK3-223ENST00000568488 TBX10O75333 385 aa18.97■□□□□ 0.63
CLK3-223ENST00000568488 NDUFV1P49821 464 aa18.97■□□□□ 0.63
CLK3-223ENST00000568488 FOXK2Q01167 660 aa18.97■□□□□ 0.63
CLK3-223ENST00000568488 ZNF543Q08ER8 600 aa18.97■□□□□ 0.63
CLK3-223ENST00000568488 ZMYM1Q5SVZ6 1142 aa18.97■□□□□ 0.63
CLK3-223ENST00000568488 ARHGEF16Q5VV41 709 aa18.97■□□□□ 0.63
CLK3-223ENST00000568488 SERINC5Q86VE9 423 aa18.97■□□□□ 0.63
CLK3-223ENST00000568488 FBXL6Q8N531 539 aa18.97■□□□□ 0.63
CLK3-223ENST00000568488 EMID1Q96A84 441 aaPredicted RBP18.97■□□□□ 0.63
CLK3-223ENST00000568488 IWS1Q96ST2 819 aa18.97■□□□□ 0.63
CLK3-223ENST00000568488 OSBPL7Q9BZF2 842 aa18.97■□□□□ 0.63
CLK3-223ENST00000568488 LMAN2LQ9H0V9 348 aa18.97■□□□□ 0.63
CLK3-223ENST00000568488 COL20A1Q9P218 1284 aa18.97■□□□□ 0.63
CLK3-223ENST00000568488 C17orf102A2RUQ5 167 aa18.96■□□□□ 0.63
CLK3-223ENST00000568488 RB1P06400 928 aa18.96■□□□□ 0.63
CLK3-223ENST00000568488 EIF2AK2P19525 551 aaKnown RBP18.96■□□□□ 0.63
CLK3-223ENST00000568488 BMPR1AP36894 532 aa18.96■□□□□ 0.63
CLK3-223ENST00000568488 ZXDAP98168 799 aa18.96■□□□□ 0.63
CLK3-223ENST00000568488 C11orf84Q9BUA3 381 aaPredicted RBP18.96■□□□□ 0.63
CLK3-223ENST00000568488 UBA5Q9GZZ9 404 aa18.96■□□□□ 0.63
CLK3-223ENST00000568488 CPVLQ9H3G5 476 aa18.96■□□□□ 0.63
CLK3-223ENST00000568488 CHMP4BQ9H444 224 aaKnown RBP18.96■□□□□ 0.63
CLK3-223ENST00000568488 ORC4O43929 436 aa18.95■□□□□ 0.62
CLK3-223ENST00000568488 PPFIA4O75335 1185 aa18.95■□□□□ 0.62
CLK3-223ENST00000568488 EIF3JO75822 258 aaKnown RBP18.95■□□□□ 0.62
CLK3-223ENST00000568488 GOLGA8HP0CJ92 632 aa18.95■□□□□ 0.62
CLK3-223ENST00000568488 SPATA33Q96N06 139 aa18.95■□□□□ 0.62
CLK3-223ENST00000568488 ANAPC4Q9UJX5 808 aa18.95■□□□□ 0.62
CLK3-223ENST00000568488 ZFHX2Q9C0A1 2572 aaPredicted RBP18.95■□□□□ 0.62
CLK3-223ENST00000568488 NLRC5Q86WI3 1866 aa18.94■□□□□ 0.62
CLK3-223ENST00000568488 C5orf67F2Z3F1 127 aa18.94■□□□□ 0.62
CLK3-223ENST00000568488 FOXP2O15409 715 aa18.94■□□□□ 0.62
CLK3-223ENST00000568488 ADAM15Q13444 863 aa18.94■□□□□ 0.62
CLK3-223ENST00000568488 MCF2L2Q86YR7 1114 aa18.94■□□□□ 0.62
CLK3-223ENST00000568488 ABCB11O95342 1321 aa18.94■□□□□ 0.62
CLK3-223ENST00000568488 TREHO43280 583 aa18.93■□□□□ 0.62
CLK3-223ENST00000568488 NR3C2P08235 984 aa18.93■□□□□ 0.62
CLK3-223ENST00000568488 HNRNPUQ00839 825 aaKnown RBP eCLIP18.93■□□□□ 0.62
CLK3-223ENST00000568488 HSDL1Q3SXM5 330 aa18.93■□□□□ 0.62
CLK3-223ENST00000568488 MYSM1Q5VVJ2 828 aa18.93■□□□□ 0.62
CLK3-223ENST00000568488 IRF2BPLQ9H1B7 796 aa18.93■□□□□ 0.62
CLK3-223ENST00000568488 ALG13Q9NP73 1137 aaKnown RBP18.93■□□□□ 0.62
CLK3-223ENST00000568488 TCP11L1Q9NUJ3 509 aa18.93■□□□□ 0.62
CLK3-223ENST00000568488 RWDD3Q9Y3V2 267 aa18.93■□□□□ 0.62
CLK3-223ENST00000568488 GGPS1O95749 300 aa18.92■□□□□ 0.62
CLK3-223ENST00000568488 MYCLP12524 364 aaPredicted RBP18.92■□□□□ 0.62
CLK3-223ENST00000568488 VCPP55072 806 aaKnown RBP18.92■□□□□ 0.62
CLK3-223ENST00000568488 CDC37Q16543 378 aaPredicted RBP18.92■□□□□ 0.62
CLK3-223ENST00000568488 VPS53Q5VIR6 699 aa18.92■□□□□ 0.62
CLK3-223ENST00000568488 APBB2Q92870 758 aa18.92■□□□□ 0.62
CLK3-223ENST00000568488 KIAA1217Q5T5P2 1943 aa18.92■□□□□ 0.62
CLK3-223ENST00000568488 H0Y858 1186 aa18.91■□□□□ 0.62
CLK3-223ENST00000568488 CFBP00751 764 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms