RNA–Protein interactions for RNA: ENST00000566347.5

CLN6-207, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 1 (best) BASIC

Gene CLN6, Length 981 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-207ENST00000566347 AFAP1L1Q8TED9 768 aa23.28■■□□□ 1.32
CLN6-207ENST00000566347 GTF2IRD1Q9UHL9 959 aa23.28■■□□□ 1.32
CLN6-207ENST00000566347 SLC12A7Q9Y666 1083 aa23.28■■□□□ 1.32
CLN6-207ENST00000566347 SCN5AQ14524 2016 aa23.28■■□□□ 1.32
CLN6-207ENST00000566347 PIK3CDO00329 1044 aa23.27■■□□□ 1.32
CLN6-207ENST00000566347 ZNF286BP0CG31 522 aa23.27■■□□□ 1.32
CLN6-207ENST00000566347 MFSD10Q14728 455 aa23.27■■□□□ 1.32
CLN6-207ENST00000566347 SMARCC2Q8TAQ2 1214 aa23.27■■□□□ 1.32
CLN6-207ENST00000566347 EYSQ5T1H1 3165 aa23.27■■□□□ 1.32
CLN6-207ENST00000566347 HAS3O00219 553 aa23.26■■□□□ 1.31
CLN6-207ENST00000566347 PLEKHA8P1O95397 391 aa23.26■■□□□ 1.31
CLN6-207ENST00000566347 SP2Q02086 613 aa23.26■■□□□ 1.31
CLN6-207ENST00000566347 KIAA0753Q2KHM9 967 aa23.26■■□□□ 1.31
CLN6-207ENST00000566347 HSDL1Q3SXM5 330 aa23.26■■□□□ 1.31
CLN6-207ENST00000566347 SGMS1Q86VZ5 419 aa23.26■■□□□ 1.31
CLN6-207ENST00000566347 SRBD1Q8N5C6 995 aaKnown RBP23.26■■□□□ 1.31
CLN6-207ENST00000566347 ALG1Q9BT22 464 aa23.26■■□□□ 1.31
CLN6-207ENST00000566347 MLXIPQ9HAP2 919 aa23.26■■□□□ 1.31
CLN6-207ENST00000566347 HDAC6Q9UBN7 1215 aa23.26■■□□□ 1.31
CLN6-207ENST00000566347 CHD9Q3L8U1 2897 aa23.26■■□□□ 1.31
CLN6-207ENST00000566347 GBF1Q92538 1859 aa23.26■■□□□ 1.31
CLN6-207ENST00000566347 TRIP12Q14669 1992 aaPredicted RBP23.25■■□□□ 1.31
CLN6-207ENST00000566347 CUL9Q8IWT3 2517 aa23.25■■□□□ 1.31
CLN6-207ENST00000566347 PARNO95453 639 aaKnown RBP23.25■■□□□ 1.31
CLN6-207ENST00000566347 ATP2A2P16615 1042 aaKnown RBP23.25■■□□□ 1.31
CLN6-207ENST00000566347 ICAM3P32942 547 aa23.25■■□□□ 1.31
CLN6-207ENST00000566347 MRPS9P82933 396 aaKnown RBP23.25■■□□□ 1.31
CLN6-207ENST00000566347 XRRA1Q6P2D8 792 aa23.25■■□□□ 1.31
CLN6-207ENST00000566347 INPP4AQ96PE3 977 aaPredicted RBP23.25■■□□□ 1.31
CLN6-207ENST00000566347 CTAGE1Q96RT6 745 aa23.25■■□□□ 1.31
CLN6-207ENST00000566347 GAS2L1Q99501 681 aaPredicted RBP23.25■■□□□ 1.31
CLN6-207ENST00000566347 FTOQ9C0B1 505 aaKnown RBP eCLIP23.25■■□□□ 1.31
CLN6-207ENST00000566347 SLC28A3Q9HAS3 691 aa23.25■■□□□ 1.31
CLN6-207ENST00000566347 PCDHA11Q9Y5I1 949 aa23.25■■□□□ 1.31
CLN6-207ENST00000566347 MYO9BQ13459 2157 aa23.24■■□□□ 1.31
CLN6-207ENST00000566347 CDC45O75419 566 aa23.24■■□□□ 1.31
CLN6-207ENST00000566347 RXRAP19793 462 aa23.24■■□□□ 1.31
CLN6-207ENST00000566347 RBL2Q08999 1139 aa23.24■■□□□ 1.31
CLN6-207ENST00000566347 COL9A3Q14050 684 aaPredicted RBP23.24■■□□□ 1.31
CLN6-207ENST00000566347 NEDD9Q14511 834 aa23.24■■□□□ 1.31
CLN6-207ENST00000566347 USP17L6PQ6QN14 398 aa23.24■■□□□ 1.31
CLN6-207ENST00000566347 SYNE3Q6ZMZ3 975 aa23.24■■□□□ 1.31
CLN6-207ENST00000566347 SKAP1Q86WV1 359 aa23.24■■□□□ 1.31
CLN6-207ENST00000566347 FANCBQ8NB91 859 aa23.24■■□□□ 1.31
CLN6-207ENST00000566347 GPKOWQ92917 476 aaPredicted RBP eCLIP23.24■■□□□ 1.31
CLN6-207ENST00000566347 ZFP91Q96JP5 570 aaPredicted RBP23.24■■□□□ 1.31
CLN6-207ENST00000566347 LRRC2Q9BYS8 371 aa23.24■■□□□ 1.31
CLN6-207ENST00000566347 NKX2-4Q9H2Z4 354 aa23.24■■□□□ 1.31
CLN6-207ENST00000566347 MEIS2O14770 477 aa23.23■■□□□ 1.31
CLN6-207ENST00000566347 FIBPO43427 364 aa23.23■■□□□ 1.31
CLN6-207ENST00000566347 SORBS3O60504 671 aa23.23■■□□□ 1.31
CLN6-207ENST00000566347 SELPP16109 830 aa23.23■■□□□ 1.31
CLN6-207ENST00000566347 PCNX4Q63HM2 1172 aa23.23■■□□□ 1.31
CLN6-207ENST00000566347 NEK1Q96PY6 1258 aa23.23■■□□□ 1.31
CLN6-207ENST00000566347 SLC9A7Q96T83 725 aa23.23■■□□□ 1.31
CLN6-207ENST00000566347 YBX2Q9Y2T7 364 aaKnown RBP23.23■■□□□ 1.31
CLN6-207ENST00000566347 PRUNE2Q8WUY3 3088 aa23.23■■□□□ 1.31
CLN6-207ENST00000566347 SPATA31C2B4DYI2 1134 aa23.22■■□□□ 1.31
CLN6-207ENST00000566347 NOP56O00567 594 aaKnown RBP23.22■■□□□ 1.31
CLN6-207ENST00000566347 BAIAP3O94812 1187 aa23.22■■□□□ 1.31
CLN6-207ENST00000566347 PTK7Q13308 1070 aa23.22■■□□□ 1.31
CLN6-207ENST00000566347 TSGA10IPQ3SY00 556 aa23.22■■□□□ 1.31
CLN6-207ENST00000566347 METTL7BQ6UX53 244 aa23.22■■□□□ 1.31
CLN6-207ENST00000566347 TMTC3Q6ZXV5 915 aa23.22■■□□□ 1.31
CLN6-207ENST00000566347 LRRC8DQ7L1W4 858 aa23.22■■□□□ 1.31
CLN6-207ENST00000566347 MICU3Q86XE3 530 aa23.22■■□□□ 1.31
CLN6-207ENST00000566347 CMTR1Q8N1G2 835 aaKnown RBP23.22■■□□□ 1.31
CLN6-207ENST00000566347 PHOSPHO2Q8TCD6 241 aa23.22■■□□□ 1.31
CLN6-207ENST00000566347 DHX38Q92620 1227 aaKnown RBP23.22■■□□□ 1.31
CLN6-207ENST00000566347 C16orf70Q9BSU1 422 aa23.22■■□□□ 1.31
CLN6-207ENST00000566347 PSTPIP2Q9H939 334 aa23.22■■□□□ 1.31
CLN6-207ENST00000566347 RABGGTBP53611 331 aa23.21■■□□□ 1.31
CLN6-207ENST00000566347 KRT32Q14532 448 aa23.21■■□□□ 1.31
CLN6-207ENST00000566347 NLRX1Q86UT6 975 aa23.21■■□□□ 1.31
CLN6-207ENST00000566347 RAB11FIP4Q86YS3 637 aa23.21■■□□□ 1.31
CLN6-207ENST00000566347 PRDM12Q9H4Q4 367 aa23.21■■□□□ 1.31
CLN6-207ENST00000566347 RBM28Q9NW13 759 aaKnown RBP23.21■■□□□ 1.31
CLN6-207ENST00000566347 RTEL1Q9NZ71 1219 aa23.21■■□□□ 1.31
CLN6-207ENST00000566347 TET1Q8NFU7 2136 aa23.21■■□□□ 1.31
CLN6-207ENST00000566347 CKBP12277 381 aa23.2■■□□□ 1.3
CLN6-207ENST00000566347 PPP2R2DQ66LE6 453 aa23.2■■□□□ 1.3
CLN6-207ENST00000566347 DHX32Q7L7V1 743 aaKnown RBP23.2■■□□□ 1.3
CLN6-207ENST00000566347 SENP7Q9BQF6 1050 aa23.2■■□□□ 1.3
CLN6-207ENST00000566347 USP26Q9BXU7 913 aa23.2■■□□□ 1.3
CLN6-207ENST00000566347 H3BRB1 525 aa23.19■■□□□ 1.3
CLN6-207ENST00000566347 LGALS2P05162 132 aa23.19■■□□□ 1.3
CLN6-207ENST00000566347 EXOSC10Q01780 885 aaKnown RBP23.19■■□□□ 1.3
CLN6-207ENST00000566347 SEMA3FQ13275 785 aa23.19■■□□□ 1.3
CLN6-207ENST00000566347 APOA5Q6Q788 366 aa23.19■■□□□ 1.3
CLN6-207ENST00000566347 CYFIP1Q7L576 1253 aa23.19■■□□□ 1.3
CLN6-207ENST00000566347 CCDC82Q8N4S0 544 aa23.19■■□□□ 1.3
CLN6-207ENST00000566347 GIMAP8Q8ND71 665 aaPredicted RBP23.19■■□□□ 1.3
CLN6-207ENST00000566347 TUT1Q9H6E5 874 aaKnown RBP23.19■■□□□ 1.3
CLN6-207ENST00000566347 CXCL10P02778 98 aa23.18■■□□□ 1.3
CLN6-207ENST00000566347 HMGB1P09429 215 aaKnown RBP23.18■■□□□ 1.3
CLN6-207ENST00000566347 KCNJ6P48051 423 aa23.18■■□□□ 1.3
CLN6-207ENST00000566347 CDHR1Q96JP9 859 aa23.18■■□□□ 1.3
CLN6-207ENST00000566347 CHD7Q9P2D1 2997 aa23.18■■□□□ 1.3
CLN6-207ENST00000566347 hCG_1642624A0A1W2PR95 340 aa23.17■■□□□ 1.3
CLN6-207ENST00000566347 C17orf102A2RUQ5 167 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms