RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 PTGS1P23219 599 aa15.36■□□□□ 0.05
CLK3-216ENST00000564468 ARHGAP1Q07960 439 aa15.36■□□□□ 0.05
CLK3-216ENST00000564468 MCTP2Q6DN12 878 aa15.36■□□□□ 0.05
CLK3-216ENST00000564468 TRIM22Q8IYM9 498 aa15.36■□□□□ 0.05
CLK3-216ENST00000564468 IL31RAQ8NI17 732 aa15.36■□□□□ 0.05
CLK3-216ENST00000564468 CDHR1Q96JP9 859 aa15.36■□□□□ 0.05
CLK3-216ENST00000564468 INPP4AQ96PE3 977 aaPredicted RBP15.36■□□□□ 0.05
CLK3-216ENST00000564468 COL25A1Q9BXS0 654 aaPredicted RBP15.36■□□□□ 0.05
CLK3-216ENST00000564468 ALDH8A1Q9H2A2 487 aaPredicted RBP15.36■□□□□ 0.05
CLK3-216ENST00000564468 FIBPO43427 364 aa15.35■□□□□ 0.05
CLK3-216ENST00000564468 RGS20O76081 388 aa15.35■□□□□ 0.05
CLK3-216ENST00000564468 MMP3P08254 477 aa15.35■□□□□ 0.05
CLK3-216ENST00000564468 RAG1P15918 1043 aa15.35■□□□□ 0.05
CLK3-216ENST00000564468 ICAM3P32942 547 aa15.35■□□□□ 0.05
CLK3-216ENST00000564468 CCT2P78371 535 aaKnown RBP15.35■□□□□ 0.05
CLK3-216ENST00000564468 MRPS9P82933 396 aaKnown RBP15.35■□□□□ 0.05
CLK3-216ENST00000564468 MDM2Q00987 491 aaPredicted RBP15.35■□□□□ 0.05
CLK3-216ENST00000564468 FAAP100Q0VG06 881 aa15.35■□□□□ 0.05
CLK3-216ENST00000564468 AP3B2Q13367 1082 aa15.35■□□□□ 0.05
CLK3-216ENST00000564468 NEDD9Q14511 834 aa15.35■□□□□ 0.05
CLK3-216ENST00000564468 DGKDQ16760 1214 aa15.35■□□□□ 0.05
CLK3-216ENST00000564468 PPTC7Q8NI37 304 aa15.35■□□□□ 0.05
CLK3-216ENST00000564468 AFG1LQ8WV93 481 aa15.35■□□□□ 0.05
CLK3-216ENST00000564468 IL17RAQ96F46 866 aa15.35■□□□□ 0.05
CLK3-216ENST00000564468 MLXIPQ9HAP2 919 aa15.35■□□□□ 0.05
CLK3-216ENST00000564468 PCDHA6Q9UN73 950 aa15.35■□□□□ 0.05
CLK3-216ENST00000564468 PCDHA8Q9Y5H6 950 aa15.35■□□□□ 0.05
CLK3-216ENST00000564468 ESYT2A0FGR8 921 aa15.34■□□□□ 0.05
CLK3-216ENST00000564468 MAFGO15525 162 aa15.34■□□□□ 0.05
CLK3-216ENST00000564468 GGPS1O95749 300 aa15.34■□□□□ 0.05
CLK3-216ENST00000564468 SUPT20HL2P0C7V6 817 aa15.34■□□□□ 0.05
CLK3-216ENST00000564468 GNA11P29992 359 aa15.34■□□□□ 0.05
CLK3-216ENST00000564468 PTPN11Q06124 597 aaPredicted RBP15.34■□□□□ 0.05
CLK3-216ENST00000564468 SSRP1Q08945 709 aaKnown RBP15.34■□□□□ 0.05
CLK3-216ENST00000564468 NTRK3Q16288 839 aa15.34■□□□□ 0.05
CLK3-216ENST00000564468 UBE2SQ16763 222 aa15.34■□□□□ 0.05
CLK3-216ENST00000564468 CELF3Q5SZQ8 465 aaKnown RBP15.34■□□□□ 0.05
CLK3-216ENST00000564468 FAM126BQ8IXS8 530 aa15.34■□□□□ 0.05
CLK3-216ENST00000564468 GIMAP8Q8ND71 665 aaPredicted RBP15.34■□□□□ 0.05
CLK3-216ENST00000564468 CCDC148Q8NFR7 591 aa15.34■□□□□ 0.05
CLK3-216ENST00000564468 GPRASP2Q96D09 838 aa15.34■□□□□ 0.05
CLK3-216ENST00000564468 KATNAL1Q9BW62 490 aa15.34■□□□□ 0.05
CLK3-216ENST00000564468 SLC26A6Q9BXS9 759 aa15.34■□□□□ 0.05
CLK3-216ENST00000564468 C6orf50Q9HD87 102 aa15.34■□□□□ 0.05
CLK3-216ENST00000564468 RTEL1Q9NZ71 1219 aa15.34■□□□□ 0.05
CLK3-216ENST00000564468 TRIP12Q14669 1992 aaPredicted RBP15.33■□□□□ 0.05
CLK3-216ENST00000564468 TRIM43BA6NCK2 446 aa15.33■□□□□ 0.04
CLK3-216ENST00000564468 SPATA31C2B4DYI2 1134 aa15.33■□□□□ 0.04
CLK3-216ENST00000564468 PPFIA4O75335 1185 aa15.33■□□□□ 0.04
CLK3-216ENST00000564468 CDKL5O76039 1030 aa15.33■□□□□ 0.04
CLK3-216ENST00000564468 MYSM1Q5VVJ2 828 aa15.33■□□□□ 0.04
CLK3-216ENST00000564468 TYW1BQ6NUM6 668 aa15.33■□□□□ 0.04
CLK3-216ENST00000564468 NFRKBQ6P4R8 1299 aa15.33■□□□□ 0.04
CLK3-216ENST00000564468 SH3RF1Q7Z6J0 888 aa15.33■□□□□ 0.04
CLK3-216ENST00000564468 BICD2Q8TD16 824 aa15.33■□□□□ 0.04
CLK3-216ENST00000564468 PHKBQ93100 1093 aa15.33■□□□□ 0.04
CLK3-216ENST00000564468 TRIM43Q96BQ3 446 aaPredicted RBP15.33■□□□□ 0.04
CLK3-216ENST00000564468 SPATA33Q96N06 139 aa15.33■□□□□ 0.04
CLK3-216ENST00000564468 SENP7Q9BQF6 1050 aa15.33■□□□□ 0.04
CLK3-216ENST00000564468 ZMYND12Q9H0C1 365 aa15.33■□□□□ 0.04
CLK3-216ENST00000564468 NCOA5Q9HCD5 579 aaKnown RBP15.33■□□□□ 0.04
CLK3-216ENST00000564468 SH3GLB2Q9NR46 395 aa15.33■□□□□ 0.04
CLK3-216ENST00000564468 TIMP1P01033 207 aa15.32■□□□□ 0.04
CLK3-216ENST00000564468 CD4P01730 458 aa15.32■□□□□ 0.04
CLK3-216ENST00000564468 UBA1P22314 1058 aaKnown RBP15.32■□□□□ 0.04
CLK3-216ENST00000564468 PSMC6P62333 389 aa15.32■□□□□ 0.04
CLK3-216ENST00000564468 PKN1Q16512 942 aa15.32■□□□□ 0.04
CLK3-216ENST00000564468 ZNF697Q5TEC3 545 aa15.32■□□□□ 0.04
CLK3-216ENST00000564468 FAM177A1Q8N128 213 aaPredicted RBP15.32■□□□□ 0.04
CLK3-216ENST00000564468 BADQ92934 168 aa15.32■□□□□ 0.04
CLK3-216ENST00000564468 ZFP91Q96JP5 570 aaPredicted RBP15.32■□□□□ 0.04
CLK3-216ENST00000564468 SLKQ9H2G2 1235 aaPredicted RBP15.32■□□□□ 0.04
CLK3-216ENST00000564468 TBX21Q9UL17 535 aa15.32■□□□□ 0.04
CLK3-216ENST00000564468 GRIN2DO15399 1336 aa15.32■□□□□ 0.04
CLK3-216ENST00000564468 NOP56O00567 594 aaKnown RBP15.31■□□□□ 0.04
CLK3-216ENST00000564468 DEXIO95424 95 aa15.31■□□□□ 0.04
CLK3-216ENST00000564468 CLK2P49760 499 aaKnown RBP15.31■□□□□ 0.04
CLK3-216ENST00000564468 SP2Q02086 613 aa15.31■□□□□ 0.04
CLK3-216ENST00000564468 STK3Q13188 491 aa15.31■□□□□ 0.04
CLK3-216ENST00000564468 NBPF20Q3BBV1 942 aa15.31■□□□□ 0.04
CLK3-216ENST00000564468 FAM47CQ5HY64 1035 aa15.31■□□□□ 0.04
CLK3-216ENST00000564468 METTL7BQ6UX53 244 aa15.31■□□□□ 0.04
CLK3-216ENST00000564468 ANO3Q9BYT9 981 aa15.31■□□□□ 0.04
CLK3-216ENST00000564468 UBIAD1Q9Y5Z9 338 aa15.31■□□□□ 0.04
CLK3-216ENST00000564468 SEC24BO95487 1268 aa15.3■□□□□ 0.04
CLK3-216ENST00000564468 HOXD8P13378 290 aaPredicted RBP15.3■□□□□ 0.04
CLK3-216ENST00000564468 NEK4P51957 841 aa15.3■□□□□ 0.04
CLK3-216ENST00000564468 AK2P54819 239 aa15.3■□□□□ 0.04
CLK3-216ENST00000564468 FPGSQ05932 587 aa15.3■□□□□ 0.04
CLK3-216ENST00000564468 MTMR1Q13613 665 aa15.3■□□□□ 0.04
CLK3-216ENST00000564468 HSDL1Q3SXM5 330 aa15.3■□□□□ 0.04
CLK3-216ENST00000564468 MFSD5Q6N075 450 aa15.3■□□□□ 0.04
CLK3-216ENST00000564468 REXO1Q8N1G1 1221 aaKnown RBP15.3■□□□□ 0.04
CLK3-216ENST00000564468 TMEM199Q8N511 208 aa15.3■□□□□ 0.04
CLK3-216ENST00000564468 LARP6Q9BRS8 491 aaKnown RBP15.3■□□□□ 0.04
CLK3-216ENST00000564468 JADE2Q9NQC1 790 aa15.3■□□□□ 0.04
CLK3-216ENST00000564468 B4GALT4O60513 344 aa15.29■□□□□ 0.04
CLK3-216ENST00000564468 PFKFB2O60825 505 aa15.29■□□□□ 0.04
CLK3-216ENST00000564468 XBP1P17861 261 aa15.29■□□□□ 0.04
CLK3-216ENST00000564468 ZNF76P36508 570 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms