RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 HERVK_113Q902F9 699 aa19.38■□□□□ 0.69
CLK3-210ENST00000563112 KAT2BQ92831 832 aa19.38■□□□□ 0.69
CLK3-210ENST00000563112 SCLYQ96I15 445 aa19.38■□□□□ 0.69
CLK3-210ENST00000563112 ALG1Q9BT22 464 aa19.38■□□□□ 0.69
CLK3-210ENST00000563112 SEMA6BQ9H3T3 888 aa19.38■□□□□ 0.69
CLK3-210ENST00000563112 RTEL1Q9NZ71 1219 aa19.38■□□□□ 0.69
CLK3-210ENST00000563112 KLF18A0A0U1RQI7 1052 aa19.37■□□□□ 0.69
CLK3-210ENST00000563112 hCG_1642624A0A1W2PR95 340 aa19.37■□□□□ 0.69
CLK3-210ENST00000563112 PITPNM1O00562 1244 aa19.37■□□□□ 0.69
CLK3-210ENST00000563112 PFKMP08237 780 aa19.37■□□□□ 0.69
CLK3-210ENST00000563112 ICAM3P32942 547 aa19.37■□□□□ 0.69
CLK3-210ENST00000563112 HSPA4P34932 840 aa19.37■□□□□ 0.69
CLK3-210ENST00000563112 MRPS9P82933 396 aaKnown RBP19.37■□□□□ 0.69
CLK3-210ENST00000563112 SP2Q02086 613 aa19.37■□□□□ 0.69
CLK3-210ENST00000563112 NEDD9Q14511 834 aa19.37■□□□□ 0.69
CLK3-210ENST00000563112 MFSD10Q14728 455 aa19.37■□□□□ 0.69
CLK3-210ENST00000563112 PCNX4Q63HM2 1172 aa19.37■□□□□ 0.69
CLK3-210ENST00000563112 HEATR3Q7Z4Q2 680 aa19.37■□□□□ 0.69
CLK3-210ENST00000563112 NLRX1Q86UT6 975 aa19.37■□□□□ 0.69
CLK3-210ENST00000563112 INPP4AQ96PE3 977 aaPredicted RBP19.37■□□□□ 0.69
CLK3-210ENST00000563112 BRPF3Q9ULD4 1205 aa19.37■□□□□ 0.69
CLK3-210ENST00000563112 NAP1L2Q9ULW6 460 aaPredicted RBP19.37■□□□□ 0.69
CLK3-210ENST00000563112 SPDYE3A6NKU9 549 aa19.36■□□□□ 0.69
CLK3-210ENST00000563112 GOLGA8AA7E2F4 631 aa19.36■□□□□ 0.69
CLK3-210ENST00000563112 GOLGA8BA8MQT2 603 aa19.36■□□□□ 0.69
CLK3-210ENST00000563112 SPATA31C2B4DYI2 1134 aa19.36■□□□□ 0.69
CLK3-210ENST00000563112 NOP56O00567 594 aaKnown RBP19.36■□□□□ 0.69
CLK3-210ENST00000563112 FIBPO43427 364 aa19.36■□□□□ 0.69
CLK3-210ENST00000563112 F2P00734 622 aa19.36■□□□□ 0.69
CLK3-210ENST00000563112 RFC2P35250 354 aa19.36■□□□□ 0.69
CLK3-210ENST00000563112 RCAN1P53805 252 aa19.36■□□□□ 0.69
CLK3-210ENST00000563112 KIAA0753Q2KHM9 967 aa19.36■□□□□ 0.69
CLK3-210ENST00000563112 HSDL1Q3SXM5 330 aa19.36■□□□□ 0.69
CLK3-210ENST00000563112 OTOP2Q7RTS6 562 aa19.36■□□□□ 0.69
CLK3-210ENST00000563112 GPKOWQ92917 476 aaPredicted RBP eCLIP19.36■□□□□ 0.69
CLK3-210ENST00000563112 KCNB2Q92953 911 aa19.36■□□□□ 0.69
CLK3-210ENST00000563112 JAKMIP1Q96N16 626 aaKnown RBP19.36■□□□□ 0.69
CLK3-210ENST00000563112 GUCD1Q96NT3 240 aa19.36■□□□□ 0.69
CLK3-210ENST00000563112 HDAC6Q9UBN7 1215 aa19.36■□□□□ 0.69
CLK3-210ENST00000563112 ZNF286BP0CG31 522 aa19.35■□□□□ 0.69
CLK3-210ENST00000563112 HOXD8P13378 290 aaPredicted RBP19.35■□□□□ 0.69
CLK3-210ENST00000563112 DNAJB2P25686 324 aa19.35■□□□□ 0.69
CLK3-210ENST00000563112 GDF6Q6KF10 455 aaPredicted RBP19.35■□□□□ 0.69
CLK3-210ENST00000563112 BLOC1S2Q6QNY1 142 aa19.35■□□□□ 0.69
CLK3-210ENST00000563112 CAGE1Q8TC20 777 aa19.35■□□□□ 0.69
CLK3-210ENST00000563112 EHMT1Q9H9B1 1298 aa19.35■□□□□ 0.69
CLK3-210ENST00000563112 GTF2IRD1Q9UHL9 959 aa19.35■□□□□ 0.69
CLK3-210ENST00000563112 SNX14Q9Y5W7 946 aa19.35■□□□□ 0.69
CLK3-210ENST00000563112 CNTNAP5Q8WYK1 1306 aa19.34■□□□□ 0.69
CLK3-210ENST00000563112 CCDC196A0A1B0GTZ2 297 aa19.34■□□□□ 0.69
CLK3-210ENST00000563112 ZBBXA8MT70 800 aa19.34■□□□□ 0.69
CLK3-210ENST00000563112 HAS3O00219 553 aa19.34■□□□□ 0.69
CLK3-210ENST00000563112 ACTN1P12814 892 aa19.34■□□□□ 0.69
CLK3-210ENST00000563112 PSMA5P28066 241 aa19.34■□□□□ 0.69
CLK3-210ENST00000563112 NAPAP54920 295 aa19.34■□□□□ 0.69
CLK3-210ENST00000563112 Q6ZUG5 572 aa19.34■□□□□ 0.69
CLK3-210ENST00000563112 DEFB128Q7Z7B8 93 aa19.34■□□□□ 0.69
CLK3-210ENST00000563112 TEX2Q8IWB9 1127 aa19.34■□□□□ 0.69
CLK3-210ENST00000563112 GIMAP8Q8ND71 665 aaPredicted RBP19.34■□□□□ 0.69
CLK3-210ENST00000563112 SLC17A8Q8NDX2 589 aa19.34■□□□□ 0.69
CLK3-210ENST00000563112 TIFAQ96CG3 184 aa19.34■□□□□ 0.69
CLK3-210ENST00000563112 CDX2Q99626 313 aaPredicted RBP19.34■□□□□ 0.69
CLK3-210ENST00000563112 SENP7Q9BQF6 1050 aa19.34■□□□□ 0.69
CLK3-210ENST00000563112 TTYH1Q9H313 450 aaPredicted RBP19.34■□□□□ 0.69
CLK3-210ENST00000563112 MSRAQ9UJ68 235 aa19.34■□□□□ 0.69
CLK3-210ENST00000563112 SLC4A7Q9Y6M7 1214 aa19.34■□□□□ 0.69
CLK3-210ENST00000563112 V9GY48 417 aaPredicted RBP19.34■□□□□ 0.69
CLK3-210ENST00000563112 hCG_1984214I3L0E3 225 aa19.33■□□□□ 0.68
CLK3-210ENST00000563112 IQCF3P0C7M6 154 aa19.33■□□□□ 0.68
CLK3-210ENST00000563112 RAB30Q15771 203 aa19.33■□□□□ 0.68
CLK3-210ENST00000563112 UBE2SQ16763 222 aa19.33■□□□□ 0.68
CLK3-210ENST00000563112 PPP1R18Q6NYC8 613 aa19.33■□□□□ 0.68
CLK3-210ENST00000563112 METTL7BQ6UX53 244 aa19.33■□□□□ 0.68
CLK3-210ENST00000563112 CYFIP1Q7L576 1253 aa19.33■□□□□ 0.68
CLK3-210ENST00000563112 ZNF713Q8N859 430 aaPredicted RBP19.33■□□□□ 0.68
CLK3-210ENST00000563112 AFAP1L1Q8TED9 768 aa19.33■□□□□ 0.68
CLK3-210ENST00000563112 CDHR1Q96JP9 859 aa19.33■□□□□ 0.68
CLK3-210ENST00000563112 USP26Q9BXU7 913 aa19.33■□□□□ 0.68
CLK3-210ENST00000563112 FTOQ9C0B1 505 aaKnown RBP eCLIP19.33■□□□□ 0.68
CLK3-210ENST00000563112 CXXC1Q9P0U4 656 aaPredicted RBP19.33■□□□□ 0.68
CLK3-210ENST00000563112 GRXCR1A8MXD5 290 aa19.32■□□□□ 0.68
CLK3-210ENST00000563112 H3BRB1 525 aa19.32■□□□□ 0.68
CLK3-210ENST00000563112 EPB41L2O43491 1005 aaKnown RBP19.32■□□□□ 0.68
CLK3-210ENST00000563112 CPA1P15085 419 aa19.32■□□□□ 0.68
CLK3-210ENST00000563112 METAP2P50579 478 aaKnown RBP eCLIP19.32■□□□□ 0.68
CLK3-210ENST00000563112 WWC2Q6AWC2 1192 aa19.32■□□□□ 0.68
CLK3-210ENST00000563112 BRF1Q92994 677 aa19.32■□□□□ 0.68
CLK3-210ENST00000563112 GPRASP2Q96D09 838 aa19.32■□□□□ 0.68
CLK3-210ENST00000563112 PBX4Q9BYU1 374 aa19.32■□□□□ 0.68
CLK3-210ENST00000563112 GLT8D2Q9H1C3 349 aa19.32■□□□□ 0.68
CLK3-210ENST00000563112 TUT1Q9H6E5 874 aaKnown RBP19.32■□□□□ 0.68
CLK3-210ENST00000563112 PCDHA6Q9UN73 950 aa19.32■□□□□ 0.68
CLK3-210ENST00000563112 PCDHA8Q9Y5H6 950 aa19.32■□□□□ 0.68
CLK3-210ENST00000563112 PARNO95453 639 aaKnown RBP19.31■□□□□ 0.68
CLK3-210ENST00000563112 FOSP01100 380 aaPredicted RBP19.31■□□□□ 0.68
CLK3-210ENST00000563112 LGALS2P05162 132 aa19.31■□□□□ 0.68
CLK3-210ENST00000563112 SELPP16109 830 aa19.31■□□□□ 0.68
CLK3-210ENST00000563112 APOBRQ0VD83 1088 aa19.31■□□□□ 0.68
CLK3-210ENST00000563112 FUT2Q10981 343 aa19.31■□□□□ 0.68
CLK3-210ENST00000563112 SEMA3FQ13275 785 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms