RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 WRNIP1Q96S55 665 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 IWS1Q96ST2 819 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 TEKT3Q9BXF9 490 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 TEX13BQ9BXU2 312 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 TANGO6Q9C0B7 1094 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 FANCLQ9NW38 375 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 CGNQ9P2M7 1197 aaKnown RBP8.38□□□□□ -1.07
VPS39-204ENST00000561818 ODF2LQ9ULJ1 636 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 COL4A3BPQ9Y5P4 624 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 ATAD5Q96QE3 1844 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 PFASO15067 1338 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 PPP1R3GB7ZBB8 358 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 EIF3DO15371 548 aaKnown RBP eCLIP8.37□□□□□ -1.07
VPS39-204ENST00000561818 TBCAO75347 108 aaKnown RBP8.37□□□□□ -1.07
VPS39-204ENST00000561818 IPO7O95373 1038 aaKnown RBP8.37□□□□□ -1.07
VPS39-204ENST00000561818 CFBP00751 764 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 KRT18P05783 430 aaKnown RBP8.37□□□□□ -1.07
VPS39-204ENST00000561818 SKILP12757 684 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 PTPRAP18433 802 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 VCAM1P19320 739 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 RPL13P26373 211 aaKnown RBP8.37□□□□□ -1.07
VPS39-204ENST00000561818 ECE1P42892 770 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 TUBB4BP68371 445 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 FKBP3Q00688 224 aaKnown RBP8.37□□□□□ -1.07
VPS39-204ENST00000561818 KRT76Q01546 638 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 COG2Q14746 738 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 EDRF1Q3B7T1 1238 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 GNPTABQ3T906 1256 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 TBC1D10BQ4KMP7 808 aaPredicted RBP8.37□□□□□ -1.07
VPS39-204ENST00000561818 TCP11X2Q5H9J9 407 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 FIGNQ5HY92 759 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 ANGEL2Q5VTE6 544 aaKnown RBP8.37□□□□□ -1.07
VPS39-204ENST00000561818 LRCH2Q5VUJ6 765 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 USP17L6PQ6QN14 398 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 TMC6Q7Z403 805 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 FILIP1Q7Z7B0 1213 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 PNMA8AQ86V59 439 aaPredicted RBP8.37□□□□□ -1.07
VPS39-204ENST00000561818 MYOCDQ8IZQ8 938 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 SPICE1Q8N0Z3 855 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 CSGALNACT2Q8N6G5 542 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 SPC24Q8NBT2 197 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 PROCA1Q8NCQ7 364 aaPredicted RBP8.37□□□□□ -1.07
VPS39-204ENST00000561818 CHST13Q8NET6 341 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 DNERQ8NFT8 737 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 ACER1Q8TDN7 264 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 HAS1Q92839 578 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 KLRG1Q96E93 195 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 NACC1Q96RE7 527 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 EDEM3Q9BZQ6 932 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 CPVLQ9H3G5 476 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 OLFML3Q9NRN5 406 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 TMEM260Q9NX78 707 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 GGA3Q9NZ52 723 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 FAM184BQ9ULE4 1060 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 CTNND2Q9UQB3 1225 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 PPME1Q9Y570 386 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 PCDHAC2Q9Y5I4 1007 aa8.37□□□□□ -1.07
VPS39-204ENST00000561818 RBBP6Q7Z6E9 1792 aaKnown RBP8.37□□□□□ -1.07
VPS39-204ENST00000561818 PHLPP2Q6ZVD8 1323 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 RPTORQ8N122 1335 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 LGALS16A8MUM7 142 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 KCNJ18B7U540 433 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 AKR1B15C9JRZ8 316 aaPredicted RBP8.36□□□□□ -1.07
VPS39-204ENST00000561818 H0YCG3 227 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 MEIS1O00470 390 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 WNT7AO00755 349 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 CXCL11O14625 94 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 N4BP3O15049 544 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 LYPLA2O95372 231 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 EYA4O95677 639 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 PLA2G4BP0C869 781 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 MAPTP10636 758 aaKnown RBP8.36□□□□□ -1.07
VPS39-204ENST00000561818 BMP6P22004 513 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 PTGS1P23219 599 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 CCND2P30279 289 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 PRELPP51888 382 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 FKBP1BP68106 108 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 MAP3K9P80192 1104 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 RASSF7Q02833 373 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 PPATQ06203 517 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 GRB10Q13322 594 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 MTMR2Q13614 643 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 TUBB2AQ13885 445 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 MYBPC2Q14324 1141 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 KCNJ12Q14500 433 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 NR1I3Q14994 352 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 EPHA7Q15375 998 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 NOM1Q5C9Z4 860 aaKnown RBP8.36□□□□□ -1.07
VPS39-204ENST00000561818 FAM26FQ5R3K3 315 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 SMYD5Q6GMV2 418 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 CENPPQ6IPU0 288 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 KLHL10Q6JEL2 608 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 LBX2Q6XYB7 198 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 MIGA2Q7L4E1 593 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 MTERF4Q7Z6M4 381 aaKnown RBP8.36□□□□□ -1.07
VPS39-204ENST00000561818 SMAP1Q8IYB5 467 aaPredicted RBP8.36□□□□□ -1.07
VPS39-204ENST00000561818 ANKRD13AQ8IZ07 590 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 SYT2Q8N9I0 419 aaPredicted RBP8.36□□□□□ -1.07
VPS39-204ENST00000561818 DDX12PQ92771 950 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 SLC5A5Q92911 643 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms