RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 SLC35G1Q2M3R5 365 aa19.14■□□□□ 0.65
CLN3-208ENST00000561505 MICALL1Q8N3F8 863 aa19.14■□□□□ 0.65
CLN3-208ENST00000561505 C7orf31Q8N865 590 aa19.14■□□□□ 0.65
CLN3-208ENST00000561505 WNT8BQ93098 351 aa19.14■□□□□ 0.65
CLN3-208ENST00000561505 HLA-CQ95604 372 aa19.14■□□□□ 0.65
CLN3-208ENST00000561505 C16orf70Q9BSU1 422 aa19.14■□□□□ 0.65
CLN3-208ENST00000561505 C1QTNF1Q9BXJ1 281 aa19.14■□□□□ 0.65
CLN3-208ENST00000561505 MAD2L2Q9UI95 211 aa19.14■□□□□ 0.65
CLN3-208ENST00000561505 MRVI1Q9Y6F6 885 aa19.14■□□□□ 0.65
CLN3-208ENST00000561505 TCF20Q9UGU0 1960 aaKnown RBP19.13■□□□□ 0.65
CLN3-208ENST00000561505 KLRF2D3W0D1 207 aa19.13■□□□□ 0.65
CLN3-208ENST00000561505 ZBTB5O15062 677 aa19.13■□□□□ 0.65
CLN3-208ENST00000561505 CFBP00751 764 aa19.13■□□□□ 0.65
CLN3-208ENST00000561505 KIAA0753Q2KHM9 967 aa19.13■□□□□ 0.65
CLN3-208ENST00000561505 CELF3Q5SZQ8 465 aaKnown RBP19.13■□□□□ 0.65
CLN3-208ENST00000561505 CHST3Q7LGC8 479 aa19.13■□□□□ 0.65
CLN3-208ENST00000561505 SERINC5Q86VE9 423 aa19.13■□□□□ 0.65
CLN3-208ENST00000561505 DHX37Q8IY37 1157 aaKnown RBP19.13■□□□□ 0.65
CLN3-208ENST00000561505 RIOX1Q9H6W3 641 aa19.13■□□□□ 0.65
CLN3-208ENST00000561505 DIAPH3Q9NSV4 1193 aa19.13■□□□□ 0.65
CLN3-208ENST00000561505 ARIH1Q9Y4X5 557 aaPredicted RBP19.13■□□□□ 0.65
CLN3-208ENST00000561505 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP19.12■□□□□ 0.65
CLN3-208ENST00000561505 LINC01553A4QN01 128 aa19.12■□□□□ 0.65
CLN3-208ENST00000561505 SP2Q02086 613 aa19.12■□□□□ 0.65
CLN3-208ENST00000561505 IKBKEQ14164 716 aa19.12■□□□□ 0.65
CLN3-208ENST00000561505 PGM5Q15124 567 aa19.12■□□□□ 0.65
CLN3-208ENST00000561505 HSDL1Q3SXM5 330 aa19.12■□□□□ 0.65
CLN3-208ENST00000561505 ZNF618Q5T7W0 954 aa19.12■□□□□ 0.65
CLN3-208ENST00000561505 IL25Q9H293 177 aa19.12■□□□□ 0.65
CLN3-208ENST00000561505 SUGCTQ9HAC7 445 aa19.12■□□□□ 0.65
CLN3-208ENST00000561505 VAT1LQ9HCJ6 419 aa19.12■□□□□ 0.65
CLN3-208ENST00000561505 HTRA4P83105 476 aaPredicted RBP19.11■□□□□ 0.65
CLN3-208ENST00000561505 IFIT1BQ5T764 474 aaKnown RBP19.11■□□□□ 0.65
CLN3-208ENST00000561505 TMCO2Q7Z6W1 182 aaPredicted RBP19.11■□□□□ 0.65
CLN3-208ENST00000561505 SP7Q8TDD2 431 aaPredicted RBP19.11■□□□□ 0.65
CLN3-208ENST00000561505 TGS1Q96RS0 853 aaKnown RBP19.11■□□□□ 0.65
CLN3-208ENST00000561505 RAPGEFL1Q9UHV5 662 aa19.11■□□□□ 0.65
CLN3-208ENST00000561505 PCDHA1Q9Y5I3 950 aa19.11■□□□□ 0.65
CLN3-208ENST00000561505 COL4A4P53420 1690 aaPredicted RBP19.11■□□□□ 0.65
CLN3-208ENST00000561505 MYH6P13533 1939 aa19.1■□□□□ 0.65
CLN3-208ENST00000561505 FRMPD4Q14CM0 1322 aa19.1■□□□□ 0.65
CLN3-208ENST00000561505 EMSYQ7Z589 1322 aa19.1■□□□□ 0.65
CLN3-208ENST00000561505 LGR5O75473 907 aa19.1■□□□□ 0.65
CLN3-208ENST00000561505 ZNF286BP0CG31 522 aa19.1■□□□□ 0.65
CLN3-208ENST00000561505 ZNF200P98182 395 aaPredicted RBP19.1■□□□□ 0.65
CLN3-208ENST00000561505 TRAF1Q13077 416 aa19.1■□□□□ 0.65
CLN3-208ENST00000561505 SKIV2LQ15477 1246 aaKnown RBP19.1■□□□□ 0.65
CLN3-208ENST00000561505 B4GALNT3Q6L9W6 998 aa19.1■□□□□ 0.65
CLN3-208ENST00000561505 CYB5R4Q7L1T6 521 aa19.1■□□□□ 0.65
CLN3-208ENST00000561505 IL31RAQ8NI17 732 aa19.1■□□□□ 0.65
CLN3-208ENST00000561505 UBAC1Q9BSL1 405 aa19.1■□□□□ 0.65
CLN3-208ENST00000561505 ALG1Q9BT22 464 aa19.1■□□□□ 0.65
CLN3-208ENST00000561505 GGPS1O95749 300 aa19.09■□□□□ 0.65
CLN3-208ENST00000561505 UBA1P22314 1058 aaKnown RBP19.09■□□□□ 0.65
CLN3-208ENST00000561505 ICAM3P32942 547 aa19.09■□□□□ 0.65
CLN3-208ENST00000561505 CHMP4BP1P59074 171 aa19.09■□□□□ 0.65
CLN3-208ENST00000561505 PLEKHG4Q58EX7 1191 aa19.09■□□□□ 0.65
CLN3-208ENST00000561505 SPATA33Q96N06 139 aa19.09■□□□□ 0.65
CLN3-208ENST00000561505 ZBED2Q9BTP6 218 aa19.09■□□□□ 0.65
CLN3-208ENST00000561505 BRWD1Q9NSI6 2320 aa19.08■□□□□ 0.65
CLN3-208ENST00000561505 COL4A6Q14031 1691 aa19.08■□□□□ 0.65
CLN3-208ENST00000561505 MYH7BA7E2Y1 1941 aa19.08■□□□□ 0.65
CLN3-208ENST00000561505 CYTH3O43739 400 aa19.08■□□□□ 0.64
CLN3-208ENST00000561505 DHX16O60231 1041 aaKnown RBP19.08■□□□□ 0.64
CLN3-208ENST00000561505 CAND2O75155 1236 aa19.08■□□□□ 0.64
CLN3-208ENST00000561505 PLA2G5P39877 138 aa19.08■□□□□ 0.64
CLN3-208ENST00000561505 TROAPQ12815 778 aa19.08■□□□□ 0.64
CLN3-208ENST00000561505 GRM4Q14833 912 aa19.08■□□□□ 0.64
CLN3-208ENST00000561505 DBF4BQ8NFT6 615 aa19.08■□□□□ 0.64
CLN3-208ENST00000561505 INPP4AQ96PE3 977 aaPredicted RBP19.08■□□□□ 0.64
CLN3-208ENST00000561505 INSL6Q9Y581 213 aa19.08■□□□□ 0.64
CLN3-208ENST00000561505 STAM2O75886 525 aa19.07■□□□□ 0.64
CLN3-208ENST00000561505 HOXA13P31271 388 aaPredicted RBP19.07■□□□□ 0.64
CLN3-208ENST00000561505 ADAM17P78536 824 aa19.07■□□□□ 0.64
CLN3-208ENST00000561505 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.07■□□□□ 0.64
CLN3-208ENST00000561505 GDPD5Q8WTR4 605 aa19.07■□□□□ 0.64
CLN3-208ENST00000561505 EPHX3Q9H6B9 360 aa19.07■□□□□ 0.64
CLN3-208ENST00000561505 SIP14410 1827 aa19.07■□□□□ 0.64
CLN3-208ENST00000561505 PNMA6FA0A0J9YX94 578 aa19.06■□□□□ 0.64
CLN3-208ENST00000561505 RSPH10B2B2RC85 870 aa19.06■□□□□ 0.64
CLN3-208ENST00000561505 H3BRB1 525 aa19.06■□□□□ 0.64
CLN3-208ENST00000561505 GCOM1H8Y6P7 765 aaPredicted RBP19.06■□□□□ 0.64
CLN3-208ENST00000561505 RSPH10BP0C881 870 aa19.06■□□□□ 0.64
CLN3-208ENST00000561505 POLR2MP0CAP2 368 aa19.06■□□□□ 0.64
CLN3-208ENST00000561505 MYCLP12524 364 aaPredicted RBP19.06■□□□□ 0.64
CLN3-208ENST00000561505 CCND2P30279 289 aa19.06■□□□□ 0.64
CLN3-208ENST00000561505 MRPS9P82933 396 aaKnown RBP19.06■□□□□ 0.64
CLN3-208ENST00000561505 GPKOWQ92917 476 aaPredicted RBP eCLIP19.06■□□□□ 0.64
CLN3-208ENST00000561505 PIGSQ96S52 555 aa19.06■□□□□ 0.64
CLN3-208ENST00000561505 LRFN3Q9BTN0 628 aa19.06■□□□□ 0.64
CLN3-208ENST00000561505 RNPEPQ9H4A4 650 aa19.06■□□□□ 0.64
CLN3-208ENST00000561505 TUT1Q9H6E5 874 aaKnown RBP19.06■□□□□ 0.64
CLN3-208ENST00000561505 BCAS3Q9H6U6 928 aa19.06■□□□□ 0.64
CLN3-208ENST00000561505 SPATA31C2B4DYI2 1134 aa19.05■□□□□ 0.64
CLN3-208ENST00000561505 GPR37L1O60883 481 aa19.05■□□□□ 0.64
CLN3-208ENST00000561505 CYP21A2P08686 494 aa19.05■□□□□ 0.64
CLN3-208ENST00000561505 SEMA3FQ13275 785 aa19.05■□□□□ 0.64
CLN3-208ENST00000561505 COL19A1Q14993 1142 aa19.05■□□□□ 0.64
CLN3-208ENST00000561505 KHSRPQ92945 711 aaKnown RBP eCLIP19.05■□□□□ 0.64
CLN3-208ENST00000561505 USP26Q9BXU7 913 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms