RNA–Protein interactions for RNA: ENST00000561076.1

RTF1-207, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 314 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-207ENST00000561076 LRRC32Q14392 662 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 CDC37Q16543 378 aaPredicted RBP2.38□□□□□ -2.03
RTF1-207ENST00000561076 CCNG2Q16589 344 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 KIZQ2M2Z5 673 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 DPY19L1Q2PZI1 675 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 PAN2Q504Q3 1202 aaKnown RBP2.38□□□□□ -2.03
RTF1-207ENST00000561076 FKBP15Q5T1M5 1219 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 INTS11Q5TA45 600 aaKnown RBP2.38□□□□□ -2.03
RTF1-207ENST00000561076 AGAP9Q5VTM2 703 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 IZUMO3Q5VZ72 239 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 STYK1Q6J9G0 422 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 RETSATQ6NUM9 610 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 TLDC1Q6P9B6 456 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 FOXR1Q6PIV2 292 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 LVRNQ6Q4G3 990 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 CASC1Q6TDU7 716 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 MPRIPQ6WCQ1 1025 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 FRMD7Q6ZUT3 714 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 OTOP3Q7RTS5 596 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 VN1R5Q7Z5H4 357 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 WAPLQ7Z5K2 1190 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 PODNQ7Z5L7 613 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 PDZD3Q86UT5 571 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 PPFIBP1Q86W92 1011 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 MCATQ8IVS2 390 aaKnown RBP2.38□□□□□ -2.03
RTF1-207ENST00000561076 KSR1Q8IVT5 923 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 TMEM192Q8IY95 271 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 ZZZ3Q8IYH5 903 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 FAM43AQ8N2R8 423 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 CBARPQ8N350 705 aaPredicted RBP2.38□□□□□ -2.03
RTF1-207ENST00000561076 FIBCD1Q8N539 461 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 CCDC33Q8N5R6 958 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 OR2C3Q8N628 320 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 EFHBQ8N7U6 833 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 ZNF527Q8NB42 609 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 TMEM145Q8NBT3 493 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 CLRN3Q8NCR9 226 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 PUM2Q8TB72 1066 aaKnown RBP eCLIP2.38□□□□□ -2.03
RTF1-207ENST00000561076 BAHD1Q8TBE0 780 aaPredicted RBP2.38□□□□□ -2.03
RTF1-207ENST00000561076 RNF217Q8TC41 542 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 NSUN6Q8TEA1 469 aaKnown RBP2.38□□□□□ -2.03
RTF1-207ENST00000561076 DIS3LQ8TF46 1054 aaKnown RBP2.38□□□□□ -2.03
RTF1-207ENST00000561076 XAGE3Q8WTP9 111 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 TRAPPC12Q8WVT3 735 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 SSH1Q8WYL5 1049 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 LRTOMTQ8WZ04 291 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 FBXW5Q969U6 566 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 ARL8AQ96BM9 186 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 ACSF2Q96CM8 615 aaPredicted RBP2.38□□□□□ -2.03
RTF1-207ENST00000561076 TMEM169Q96HH4 297 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 SPATA17Q96L03 361 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 ACAP3Q96P50 834 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 FMNL2Q96PY5 1086 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 ACO2Q99798 780 aaKnown RBP2.38□□□□□ -2.03
RTF1-207ENST00000561076 SDF4Q9BRK5 362 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 ORAI3Q9BRQ5 295 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 PHF20Q9BVI0 1012 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 WDR12Q9GZL7 423 aaKnown RBP2.38□□□□□ -2.03
RTF1-207ENST00000561076 SMG9Q9H0W8 520 aaKnown RBP2.38□□□□□ -2.03
RTF1-207ENST00000561076 NUCKS1Q9H1E3 243 aaKnown RBP2.38□□□□□ -2.03
RTF1-207ENST00000561076 ALDH8A1Q9H2A2 487 aaPredicted RBP2.38□□□□□ -2.03
RTF1-207ENST00000561076 SLC12A5Q9H2X9 1139 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 PLEKHA5Q9HAU0 1116 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 PIDD1Q9HB75 910 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 LGR6Q9HBX8 967 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 GP6Q9HCN6 339 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 VTA1Q9NP79 307 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 PNPLA8Q9NP80 782 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 SH2B1Q9NRF2 756 aaPredicted RBP2.38□□□□□ -2.03
RTF1-207ENST00000561076 CNNM1Q9NRU3 951 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 MBIPQ9NS73 344 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 TBC1D22BQ9NU19 505 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 OXSMQ9NWU1 459 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 DNAJB12Q9NXW2 375 aaKnown RBP2.38□□□□□ -2.03
RTF1-207ENST00000561076 LRFN1Q9P244 771 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 CGGBP1Q9UFW8 167 aaPredicted RBP2.38□□□□□ -2.03
RTF1-207ENST00000561076 CDC23Q9UJX2 597 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 OGDHLQ9ULD0 1010 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 SOX13Q9UN79 622 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 TRIM33Q9UPN9 1127 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 CORO2BQ9UQ03 480 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 SIK3Q9Y2K2 1263 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 GPR55Q9Y2T6 319 aaPredicted RBP2.38□□□□□ -2.03
RTF1-207ENST00000561076 COQ6Q9Y2Z9 468 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 DYRK1BQ9Y463 629 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 ZNF451Q9Y4E5 1061 aa2.38□□□□□ -2.03
RTF1-207ENST00000561076 SLC12A8A0AV02 714 aa2.37□□□□□ -2.03
RTF1-207ENST00000561076 CCDC66A2RUB6 948 aa2.37□□□□□ -2.03
RTF1-207ENST00000561076 FAM83GA6ND36 823 aa2.37□□□□□ -2.03
RTF1-207ENST00000561076 FAM47E-STBD1D6RA91 191 aa2.37□□□□□ -2.03
RTF1-207ENST00000561076 M0R3H8 397 aa2.37□□□□□ -2.03
RTF1-207ENST00000561076 EIF3FO00303 357 aaPredicted RBP2.37□□□□□ -2.03
RTF1-207ENST00000561076 ADAMTS3O15072 1205 aa2.37□□□□□ -2.03
RTF1-207ENST00000561076 KPNA5O15131 536 aa2.37□□□□□ -2.03
RTF1-207ENST00000561076 FANCGO15287 622 aa2.37□□□□□ -2.03
RTF1-207ENST00000561076 NCAM2O15394 837 aa2.37□□□□□ -2.03
RTF1-207ENST00000561076 CBFA2T2O43439 604 aa2.37□□□□□ -2.03
RTF1-207ENST00000561076 KDM1AO60341 852 aa2.37□□□□□ -2.03
RTF1-207ENST00000561076 RNGTTO60942 597 aaKnown RBP2.37□□□□□ -2.03
RTF1-207ENST00000561076 ZBED4O75132 1171 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms