RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 DHX16O60231 1041 aaKnown RBP6.04□□□□□ -1.44
SPG11-220ENST00000559933 PARP1P09874 1014 aaKnown RBP6.04□□□□□ -1.44
SPG11-220ENST00000559933 BMP3P12645 472 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 DDIT3P35638 169 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 BACE1P56817 501 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 HUNKP57058 714 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 IKQ13123 557 aaPredicted RBP6.04□□□□□ -1.44
SPG11-220ENST00000559933 MOGSQ13724 837 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 PKN1Q16512 942 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 FOXD4L6Q3SYB3 417 aaPredicted RBP6.04□□□□□ -1.44
SPG11-220ENST00000559933 CCDC178Q5BJE1 867 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 NOM1Q5C9Z4 860 aaKnown RBP6.04□□□□□ -1.44
SPG11-220ENST00000559933 WWC2Q6AWC2 1192 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 KANK3Q6NY19 840 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 CCDC174Q6PII3 467 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 FOXD4L3Q6VB84 417 aaPredicted RBP6.04□□□□□ -1.44
SPG11-220ENST00000559933 NLRP8Q86W28 1048 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 RASAL3Q86YV0 1011 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 ADGRF4Q8IZF3 695 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 TMTC2Q8N394 836 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 C2orf69Q8N8R5 385 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 SMC1BQ8NDV3 1235 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 DCAF4Q8WV16 495 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 MKL1Q969V6 931 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 PIGSQ96S52 555 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 ZIC5Q96T25 663 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 MTA3Q9BTC8 594 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 WDR18Q9BV38 432 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 TANGO6Q9C0B7 1094 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 KIAA1683Q9H0B3 1180 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 RPAP3Q9H6T3 665 aaPredicted RBP6.04□□□□□ -1.44
SPG11-220ENST00000559933 VPS54Q9P1Q0 977 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 ORC3Q9UBD5 711 aaPredicted RBP6.04□□□□□ -1.44
SPG11-220ENST00000559933 GDF2Q9UK05 429 aaPredicted RBP6.04□□□□□ -1.44
SPG11-220ENST00000559933 ABT1Q9ULW3 272 aaKnown RBP6.04□□□□□ -1.44
SPG11-220ENST00000559933 KCNJ14Q9UNX9 436 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 SMC3Q9UQE7 1217 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 COL11A1P12107 1806 aaPredicted RBP6.04□□□□□ -1.44
SPG11-220ENST00000559933 A0A0G2JMZ2 1700 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 KIF28PB7ZC32 967 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 ATP9BO43861 1147 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 TOMM70O94826 608 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 CALM1P0DP23 149 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 CALM2P0DP24 149 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 CALM3P0DP25 149 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 IFNAR1P17181 557 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 SSRP1Q08945 709 aaKnown RBP6.03□□□□□ -1.44
SPG11-220ENST00000559933 PPIL2Q13356 520 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 MTFR1Q15390 333 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 CDC37Q16543 378 aaPredicted RBP6.03□□□□□ -1.44
SPG11-220ENST00000559933 QRICH1Q2TAL8 776 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 ASPRV1Q53RT3 343 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 CYP4F22Q6NT55 531 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 SAPCD2Q86UD0 394 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 ERO1BQ86YB8 467 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 BEND7Q8N7W2 519 aaPredicted RBP6.03□□□□□ -1.44
SPG11-220ENST00000559933 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.03□□□□□ -1.44
SPG11-220ENST00000559933 TPCN2Q8NHX9 752 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 ACDQ96AP0 544 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 COA7Q96BR5 231 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 ATG4CQ96DT6 458 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 ABHD17AQ96GS6 310 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 ALG1Q9BT22 464 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 R3HDMLQ9H3Y0 253 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 JMJD4Q9H9V9 463 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 AS3MTQ9HBK9 375 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 NEUROD4Q9HD90 331 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 ZNF358Q9NW07 568 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 RBM28Q9NW13 759 aaKnown RBP6.03□□□□□ -1.44
SPG11-220ENST00000559933 ZDHHC3Q9NYG2 299 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 PRR12Q9ULL5 1215 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 ZDHHC9Q9Y397 364 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 PCDHGC4Q9Y5F7 938 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 SMCHD1A6NHR9 2005 aa6.03□□□□□ -1.44
SPG11-220ENST00000559933 CCL15-CCL14A0A0B4J2E2 113 aa6.02□□□□□ -1.45
SPG11-220ENST00000559933 A0A0G2JLL6 359 aaPredicted RBP6.02□□□□□ -1.45
SPG11-220ENST00000559933 A0A1W2PNR3 127 aa6.02□□□□□ -1.45
SPG11-220ENST00000559933 VPS37CA5D8V6 355 aaPredicted RBP6.02□□□□□ -1.45
SPG11-220ENST00000559933 BTBD19C9JJ37 291 aa6.02□□□□□ -1.45
SPG11-220ENST00000559933 STXBP3O00186 592 aa6.02□□□□□ -1.45
SPG11-220ENST00000559933 ATXN7O15265 892 aaPredicted RBP6.02□□□□□ -1.45
SPG11-220ENST00000559933 AOC2O75106 756 aa6.02□□□□□ -1.45
SPG11-220ENST00000559933 FLOT1O75955 427 aa6.02□□□□□ -1.45
SPG11-220ENST00000559933 SYT1P21579 422 aa6.02□□□□□ -1.45
SPG11-220ENST00000559933 FGFR3P22607 806 aa6.02□□□□□ -1.45
SPG11-220ENST00000559933 KIF5BP33176 963 aa6.02□□□□□ -1.45
SPG11-220ENST00000559933 NT5C2P49902 561 aa6.02□□□□□ -1.45
SPG11-220ENST00000559933 ZNF157P51786 506 aaPredicted RBP6.02□□□□□ -1.45
SPG11-220ENST00000559933 STAT2P52630 851 aa6.02□□□□□ -1.45
SPG11-220ENST00000559933 RCAN1P53805 252 aa6.02□□□□□ -1.45
SPG11-220ENST00000559933 PPATQ06203 517 aa6.02□□□□□ -1.45
SPG11-220ENST00000559933 CCL15Q16663 113 aa6.02□□□□□ -1.45
SPG11-220ENST00000559933 USH1GQ495M9 461 aa6.02□□□□□ -1.45
SPG11-220ENST00000559933 SYDE2Q5VT97 1194 aa6.02□□□□□ -1.45
SPG11-220ENST00000559933 GPAT2Q6NUI2 795 aa6.02□□□□□ -1.45
SPG11-220ENST00000559933 FAM173BQ6P4H8 233 aa6.02□□□□□ -1.45
SPG11-220ENST00000559933 HEATR3Q7Z4Q2 680 aa6.02□□□□□ -1.45
SPG11-220ENST00000559933 PRRT2Q7Z6L0 340 aaPredicted RBP6.02□□□□□ -1.45
SPG11-220ENST00000559933 FERMT3Q86UX7 667 aa6.02□□□□□ -1.45
SPG11-220ENST00000559933 FAM43AQ8N2R8 423 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms