RNA–Protein interactions for RNA: ENST00000559347.1

SPG11-216, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 716 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-216ENST00000559347 PPP1R12CQ9BZL4 782 aa12.59□□□□□ -0.39
SPG11-216ENST00000559347 TRPV6Q9H1D0 765 aa12.59□□□□□ -0.39
SPG11-216ENST00000559347 PSTPIP2Q9H939 334 aa12.59□□□□□ -0.39
SPG11-216ENST00000559347 ZSWIM6Q9HCJ5 1215 aa12.59□□□□□ -0.39
SPG11-216ENST00000559347 UMODL1Q5DID0 1318 aa12.59□□□□□ -0.39
SPG11-216ENST00000559347 EYSQ5T1H1 3165 aa12.59□□□□□ -0.39
SPG11-216ENST00000559347 STXBP3O00186 592 aa12.58□□□□□ -0.4
SPG11-216ENST00000559347 FIBPO43427 364 aa12.58□□□□□ -0.4
SPG11-216ENST00000559347 GGPS1O95749 300 aa12.58□□□□□ -0.4
SPG11-216ENST00000559347 F2P00734 622 aa12.58□□□□□ -0.4
SPG11-216ENST00000559347 TGFB3P10600 412 aa12.58□□□□□ -0.4
SPG11-216ENST00000559347 ICAM3P32942 547 aa12.58□□□□□ -0.4
SPG11-216ENST00000559347 ADD1P35611 737 aaKnown RBP12.58□□□□□ -0.4
SPG11-216ENST00000559347 EVCP57679 992 aa12.58□□□□□ -0.4
SPG11-216ENST00000559347 SP2Q02086 613 aa12.58□□□□□ -0.4
SPG11-216ENST00000559347 SEMA3FQ13275 785 aa12.58□□□□□ -0.4
SPG11-216ENST00000559347 LAMC2Q13753 1193 aa12.58□□□□□ -0.4
SPG11-216ENST00000559347 TOB2Q14106 344 aaPredicted RBP12.58□□□□□ -0.4
SPG11-216ENST00000559347 SHHQ15465 462 aa12.58□□□□□ -0.4
SPG11-216ENST00000559347 DGKDQ16760 1214 aa12.58□□□□□ -0.4
SPG11-216ENST00000559347 NBPF20Q3BBV1 942 aa12.58□□□□□ -0.4
SPG11-216ENST00000559347 FAM47CQ5HY64 1035 aa12.58□□□□□ -0.4
SPG11-216ENST00000559347 CELF3Q5SZQ8 465 aaKnown RBP12.58□□□□□ -0.4
SPG11-216ENST00000559347 MYSM1Q5VVJ2 828 aa12.58□□□□□ -0.4
SPG11-216ENST00000559347 XRRA1Q6P2D8 792 aa12.58□□□□□ -0.4
SPG11-216ENST00000559347 DHX37Q8IY37 1157 aaKnown RBP12.58□□□□□ -0.4
SPG11-216ENST00000559347 PPP1R13LQ8WUF5 828 aa12.58□□□□□ -0.4
SPG11-216ENST00000559347 KAT2BQ92831 832 aa12.58□□□□□ -0.4
SPG11-216ENST00000559347 NOC4LQ9BVI4 516 aaKnown RBP12.58□□□□□ -0.4
SPG11-216ENST00000559347 HIPK3Q9H422 1215 aa12.58□□□□□ -0.4
SPG11-216ENST00000559347 TRMT13Q9NUP7 481 aaKnown RBP12.58□□□□□ -0.4
SPG11-216ENST00000559347 BARHL2Q9NY43 387 aa12.58□□□□□ -0.4
SPG11-216ENST00000559347 PTPRSQ13332 1948 aa12.58□□□□□ -0.4
SPG11-216ENST00000559347 SIP14410 1827 aa12.58□□□□□ -0.4
SPG11-216ENST00000559347 CCDC196A0A1B0GTZ2 297 aa12.57□□□□□ -0.4
SPG11-216ENST00000559347 SPDYE3A6NKU9 549 aa12.57□□□□□ -0.4
SPG11-216ENST00000559347 SORBS3O60504 671 aa12.57□□□□□ -0.4
SPG11-216ENST00000559347 ZNF286BP0CG31 522 aa12.57□□□□□ -0.4
SPG11-216ENST00000559347 CYP2C18P33260 490 aa12.57□□□□□ -0.4
SPG11-216ENST00000559347 PTPN11Q06124 597 aaPredicted RBP12.57□□□□□ -0.4
SPG11-216ENST00000559347 HSDL1Q3SXM5 330 aa12.57□□□□□ -0.4
SPG11-216ENST00000559347 GPR153Q6NV75 609 aa12.57□□□□□ -0.4
SPG11-216ENST00000559347 TEX2Q8IWB9 1127 aa12.57□□□□□ -0.4
SPG11-216ENST00000559347 UPF3BQ9BZI7 483 aaKnown RBP12.57□□□□□ -0.4
SPG11-216ENST00000559347 TM6SF1Q9BZW5 370 aa12.57□□□□□ -0.4
SPG11-216ENST00000559347 WNT8AQ9H1J5 351 aa12.57□□□□□ -0.4
SPG11-216ENST00000559347 RIC8AQ9NPQ8 531 aa12.57□□□□□ -0.4
SPG11-216ENST00000559347 CYP46A1Q9Y6A2 500 aa12.57□□□□□ -0.4
SPG11-216ENST00000559347 V9GY48 417 aaPredicted RBP12.57□□□□□ -0.4
SPG11-216ENST00000559347 WDR81Q562E7 1941 aa12.56□□□□□ -0.4
SPG11-216ENST00000559347 SPATA31C2B4DYI2 1134 aa12.56□□□□□ -0.4
SPG11-216ENST00000559347 SUPT20HL2P0C7V6 817 aa12.56□□□□□ -0.4
SPG11-216ENST00000559347 SCG2P13521 617 aa12.56□□□□□ -0.4
SPG11-216ENST00000559347 CSF2RAP15509 400 aa12.56□□□□□ -0.4
SPG11-216ENST00000559347 ADCY7P51828 1080 aa12.56□□□□□ -0.4
SPG11-216ENST00000559347 PPIGQ13427 754 aaKnown RBP eCLIP12.56□□□□□ -0.4
SPG11-216ENST00000559347 NTRK3Q16288 839 aa12.56□□□□□ -0.4
SPG11-216ENST00000559347 PFKFB3Q16875 520 aaPredicted RBP12.56□□□□□ -0.4
SPG11-216ENST00000559347 SESTD1Q86VW0 696 aa12.56□□□□□ -0.4
SPG11-216ENST00000559347 TMEM199Q8N511 208 aa12.56□□□□□ -0.4
SPG11-216ENST00000559347 RNPC3Q96LT9 517 aaKnown RBP12.56□□□□□ -0.4
SPG11-216ENST00000559347 SPATA33Q96N06 139 aa12.56□□□□□ -0.4
SPG11-216ENST00000559347 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.56□□□□□ -0.4
SPG11-216ENST00000559347 KATNAL1Q9BW62 490 aa12.56□□□□□ -0.4
SPG11-216ENST00000559347 BCAS3Q9H6U6 928 aa12.56□□□□□ -0.4
SPG11-216ENST00000559347 RTEL1Q9NZ71 1219 aa12.56□□□□□ -0.4
SPG11-216ENST00000559347 PCDHA6Q9UN73 950 aa12.56□□□□□ -0.4
SPG11-216ENST00000559347 PCDHA8Q9Y5H6 950 aa12.56□□□□□ -0.4
SPG11-216ENST00000559347 CHD7Q9P2D1 2997 aa12.55□□□□□ -0.4
SPG11-216ENST00000559347 HAS3O00219 553 aa12.55□□□□□ -0.4
SPG11-216ENST00000559347 CYP2C9P11712 490 aa12.55□□□□□ -0.4
SPG11-216ENST00000559347 PDIA3P30101 505 aaKnown RBP12.55□□□□□ -0.4
SPG11-216ENST00000559347 CLK2P49760 499 aaKnown RBP12.55□□□□□ -0.4
SPG11-216ENST00000559347 PSEN2P49810 448 aa12.55□□□□□ -0.4
SPG11-216ENST00000559347 CHMP4BP1P59074 171 aa12.55□□□□□ -0.4
SPG11-216ENST00000559347 NEDD9Q14511 834 aa12.55□□□□□ -0.4
SPG11-216ENST00000559347 MFSD10Q14728 455 aa12.55□□□□□ -0.4
SPG11-216ENST00000559347 PKN1Q16512 942 aa12.55□□□□□ -0.4
SPG11-216ENST00000559347 PSRC1Q6PGN9 363 aaPredicted RBP12.55□□□□□ -0.4
SPG11-216ENST00000559347 METTL7BQ6UX53 244 aa12.55□□□□□ -0.4
SPG11-216ENST00000559347 PHKBQ93100 1093 aa12.55□□□□□ -0.4
SPG11-216ENST00000559347 GPRASP2Q96D09 838 aa12.55□□□□□ -0.4
SPG11-216ENST00000559347 PGBD1Q96JS3 809 aa12.55□□□□□ -0.4
SPG11-216ENST00000559347 RNF26Q9BY78 433 aaPredicted RBP12.55□□□□□ -0.4
SPG11-216ENST00000559347 ANO3Q9BYT9 981 aa12.55□□□□□ -0.4
SPG11-216ENST00000559347 EHMT1Q9H9B1 1298 aa12.55□□□□□ -0.4
SPG11-216ENST00000559347 MLXIPQ9HAP2 919 aa12.55□□□□□ -0.4
SPG11-216ENST00000559347 NCOA5Q9HCD5 579 aaKnown RBP12.55□□□□□ -0.4
SPG11-216ENST00000559347 GTF2IRD1Q9UHL9 959 aa12.55□□□□□ -0.4
SPG11-216ENST00000559347 KAT6AQ92794 2004 aa12.55□□□□□ -0.4
SPG11-216ENST00000559347 TET1Q8NFU7 2136 aa12.55□□□□□ -0.4
SPG11-216ENST00000559347 ESYT2A0FGR8 921 aa12.54□□□□□ -0.4
SPG11-216ENST00000559347 SMCO2A6NFE2 343 aa12.54□□□□□ -0.4
SPG11-216ENST00000559347 PITPNM1O00562 1244 aa12.54□□□□□ -0.4
SPG11-216ENST00000559347 PRPF3O43395 683 aaKnown RBP12.54□□□□□ -0.4
SPG11-216ENST00000559347 IFNAR1P17181 557 aa12.54□□□□□ -0.4
SPG11-216ENST00000559347 ITGB5P18084 799 aa12.54□□□□□ -0.4
SPG11-216ENST00000559347 CCL23P55773 120 aa12.54□□□□□ -0.4
SPG11-216ENST00000559347 CCT2P78371 535 aaKnown RBP12.54□□□□□ -0.4
SPG11-216ENST00000559347 AP3B2Q13367 1082 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms