RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 ANKRD39Q53RE8 183 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 NOL9Q5SY16 702 aaKnown RBP2.32□□□□□ -2.04
USP3-209ENST00000558925 DENND5AQ6IQ26 1287 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 CNNM4Q6P4Q7 775 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 LHFPL2Q6ZUX7 228 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 STRA8Q7Z7C7 330 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 RNF180Q86T96 592 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 ARHGEF39Q8N4T4 335 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 TMEM145Q8NBT3 493 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 ZCRB1Q8TBF4 217 aaKnown RBP2.32□□□□□ -2.04
USP3-209ENST00000558925 ZNF526Q8TF50 670 aaPredicted RBP2.32□□□□□ -2.04
USP3-209ENST00000558925 C1orf159Q96HA4 380 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 MAP6Q96JE9 813 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 HHIPL1Q96JK4 782 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 ASPNQ9BXN1 380 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 BRINP2Q9C0B6 783 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 TRIM39Q9HCM9 518 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 USP40Q9NVE5 1235 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 WHRNQ9P202 907 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 SFMBT1Q9UHJ3 866 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 G3BP2Q9UN86 482 aaKnown RBP2.32□□□□□ -2.04
USP3-209ENST00000558925 FHOD1Q9Y613 1164 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 IRS2Q9Y4H2 1338 aa2.32□□□□□ -2.04
USP3-209ENST00000558925 ARNTLO00327 626 aa2.31□□□□□ -2.04
USP3-209ENST00000558925 NOP56O00567 594 aaKnown RBP2.31□□□□□ -2.04
USP3-209ENST00000558925 SIGLEC6O43699 453 aa2.31□□□□□ -2.04
USP3-209ENST00000558925 THBDP07204 575 aa2.31□□□□□ -2.04
USP3-209ENST00000558925 CD3EP07766 207 aa2.31□□□□□ -2.04
USP3-209ENST00000558925 SUMO1P63165 101 aaKnown RBP2.31□□□□□ -2.04
USP3-209ENST00000558925 AMPD2Q01433 879 aa2.31□□□□□ -2.04
USP3-209ENST00000558925 SCRN1Q12765 414 aa2.31□□□□□ -2.04
USP3-209ENST00000558925 NMIQ13287 307 aaPredicted RBP2.31□□□□□ -2.04
USP3-209ENST00000558925 PCBP1Q15365 356 aaKnown RBP eCLIP2.31□□□□□ -2.04
USP3-209ENST00000558925 FNDC3BQ53EP0 1204 aaKnown RBP2.31□□□□□ -2.04
USP3-209ENST00000558925 TRIM61Q5EBN2 209 aa2.31□□□□□ -2.04
USP3-209ENST00000558925 SLC35F1Q5T1Q4 408 aa2.31□□□□□ -2.04
USP3-209ENST00000558925 PKN3Q6P5Z2 889 aa2.31□□□□□ -2.04
USP3-209ENST00000558925 KCNT2Q6UVM3 1135 aa2.31□□□□□ -2.04
USP3-209ENST00000558925 CEP128Q6ZU80 1094 aa2.31□□□□□ -2.04
USP3-209ENST00000558925 USP53Q70EK8 1073 aa2.31□□□□□ -2.04
USP3-209ENST00000558925 KRT26Q7Z3Y9 468 aa2.31□□□□□ -2.04
USP3-209ENST00000558925 LRRTM3Q86VH5 581 aa2.31□□□□□ -2.04
USP3-209ENST00000558925 DDX42Q86XP3 938 aaKnown RBP eCLIP2.31□□□□□ -2.04
USP3-209ENST00000558925 CCDC103Q8IW40 242 aa2.31□□□□□ -2.04
USP3-209ENST00000558925 SCUBE1Q8IWY4 988 aa2.31□□□□□ -2.04
USP3-209ENST00000558925 RAVER1Q8IY67 606 aaKnown RBP2.31□□□□□ -2.04
USP3-209ENST00000558925 SYNPOQ8N3V7 929 aa2.31□□□□□ -2.04
USP3-209ENST00000558925 PRPF38AQ8NAV1 312 aaKnown RBP2.31□□□□□ -2.04
USP3-209ENST00000558925 KREMEN2Q8NCW0 462 aa2.31□□□□□ -2.04
USP3-209ENST00000558925 SYTL5Q8TDW5 730 aaPredicted RBP2.31□□□□□ -2.04
USP3-209ENST00000558925 SH3RF3Q8TEJ3 882 aaPredicted RBP2.31□□□□□ -2.04
USP3-209ENST00000558925 FNIP1Q8TF40 1166 aa2.31□□□□□ -2.04
USP3-209ENST00000558925 CHAC2Q8WUX2 184 aa2.31□□□□□ -2.04
USP3-209ENST00000558925 SCLYQ96I15 445 aa2.31□□□□□ -2.04
USP3-209ENST00000558925 RCC1LQ96I51 464 aaKnown RBP2.31□□□□□ -2.04
USP3-209ENST00000558925 DSCC1Q9BVC3 393 aa2.31□□□□□ -2.04
USP3-209ENST00000558925 SSBP3Q9BWW4 388 aaPredicted RBP2.31□□□□□ -2.04
USP3-209ENST00000558925 HDAC8Q9BY41 377 aa2.31□□□□□ -2.04
USP3-209ENST00000558925 MRPL4Q9BYD3 311 aaKnown RBP2.31□□□□□ -2.04
USP3-209ENST00000558925 NKX2-4Q9H2Z4 354 aa2.31□□□□□ -2.04
USP3-209ENST00000558925 CHST7Q9NS84 486 aa2.31□□□□□ -2.04
USP3-209ENST00000558925 DDX56Q9NY93 547 aaKnown RBP2.31□□□□□ -2.04
USP3-209ENST00000558925 TMEFF2Q9UIK5 374 aaPredicted RBP2.31□□□□□ -2.04
USP3-209ENST00000558925 PLAAQ9Y263 795 aa2.31□□□□□ -2.04
USP3-209ENST00000558925 ATP8A1Q9Y2Q0 1164 aa2.31□□□□□ -2.04
USP3-209ENST00000558925 TNPO3Q9Y5L0 923 aaKnown RBP2.31□□□□□ -2.04
USP3-209ENST00000558925 LOC101059915A0A1B0GWI6 518 aaPredicted RBP2.3□□□□□ -2.04
USP3-209ENST00000558925 NUDT19A8MXV4 375 aa2.3□□□□□ -2.04
USP3-209ENST00000558925 MARCH6O60337 910 aa2.3□□□□□ -2.04
USP3-209ENST00000558925 MSCO60682 206 aa2.3□□□□□ -2.04
USP3-209ENST00000558925 KPNA6O60684 536 aa2.3□□□□□ -2.04
USP3-209ENST00000558925 RFPL3O75679 317 aa2.3□□□□□ -2.04
USP3-209ENST00000558925 PARNO95453 639 aaKnown RBP2.3□□□□□ -2.04
USP3-209ENST00000558925 CRTAMO95727 393 aa2.3□□□□□ -2.04
USP3-209ENST00000558925 LCP1P13796 627 aa2.3□□□□□ -2.04
USP3-209ENST00000558925 RPL10P27635 214 aaKnown RBP2.3□□□□□ -2.04
USP3-209ENST00000558925 HTRA3P83110 453 aa2.3□□□□□ -2.04
USP3-209ENST00000558925 SEPT7Q16181 437 aaKnown RBP2.3□□□□□ -2.04
USP3-209ENST00000558925 ZC3H12BQ5HYM0 836 aaKnown RBP2.3□□□□□ -2.04
USP3-209ENST00000558925 MBLAC2Q68D91 279 aa2.3□□□□□ -2.04
USP3-209ENST00000558925 ABHD17CQ6PCB6 329 aa2.3□□□□□ -2.04
USP3-209ENST00000558925 RPTNQ6XPR3 784 aa2.3□□□□□ -2.04
USP3-209ENST00000558925 SAPCD2Q86UD0 394 aa2.3□□□□□ -2.04
USP3-209ENST00000558925 PPIL6Q8IXY8 311 aa2.3□□□□□ -2.04
USP3-209ENST00000558925 AFAP1L2Q8N4X5 818 aa2.3□□□□□ -2.04
USP3-209ENST00000558925 USHBP1Q8N6Y0 703 aa2.3□□□□□ -2.04
USP3-209ENST00000558925 GSTCDQ8NEC7 633 aa2.3□□□□□ -2.04
USP3-209ENST00000558925 FRS2Q8WU20 508 aa2.3□□□□□ -2.04
USP3-209ENST00000558925 LEO1Q8WVC0 666 aaPredicted RBP2.3□□□□□ -2.04
USP3-209ENST00000558925 KCTD13Q8WZ19 329 aa2.3□□□□□ -2.04
USP3-209ENST00000558925 LOXL4Q96JB6 756 aa2.3□□□□□ -2.04
USP3-209ENST00000558925 IPO9Q96P70 1041 aaKnown RBP2.3□□□□□ -2.04
USP3-209ENST00000558925 ZNF747Q9BV97 191 aa2.3□□□□□ -2.04
USP3-209ENST00000558925 CAAP1Q9H8G2 361 aa2.3□□□□□ -2.04
USP3-209ENST00000558925 GPRC5CQ9NQ84 441 aa2.3□□□□□ -2.04
USP3-209ENST00000558925 CLEC1BQ9P126 229 aa2.3□□□□□ -2.04
USP3-209ENST00000558925 PPARGC1AQ9UBK2 798 aaKnown RBP2.3□□□□□ -2.04
USP3-209ENST00000558925 ST6GALNAC2Q9UJ37 374 aa2.3□□□□□ -2.04
USP3-209ENST00000558925 TNFRSF18Q9Y5U5 241 aa2.3□□□□□ -2.04
USP3-209ENST00000558925 HCFC2Q9Y5Z7 792 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms